mRNA_Ecto-sp13_S_contig8140.19486.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8140.19486.1
Unique NamemRNA_Ecto-sp13_S_contig8140.19486.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8140.19486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8140contigEcto-sp13_S_contig8140:1776..2395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size620
Hectar predicted targeting categoryother localisation
Exons1
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464086.4111893-UTR-Ecto-sp13_S_contig8140:1775..20571681464086.4111893-UTR-Ecto-sp13_S_contig8140:1775..2057Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8140 1776..2057 +
1681464086.4331686-UTR-Ecto-sp13_S_contig8140:2390..23951681464086.4331686-UTR-Ecto-sp13_S_contig8140:2390..2395Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8140 2391..2395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464086.4212172-CDS-Ecto-sp13_S_contig8140:2057..23901681464086.4212172-CDS-Ecto-sp13_S_contig8140:2057..2390Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8140 2058..2390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8140.19486.1prot_Ecto-sp13_S_contig8140.19486.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8140 2058..2390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8140.19486.1

>prot_Ecto-sp13_S_contig8140.19486.1 ID=prot_Ecto-sp13_S_contig8140.19486.1|Name=mRNA_Ecto-sp13_S_contig8140.19486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
MERYVACQERLSNLSHDFPNHVGTRRQTVGLTLVPFDQKLLLVLPAVHYQ
RPQAQQMRDSSGYRTRCPRESQQNVQQSGAEHRAFAYVGTFKPILRVMLF
CHLATTGTDA*
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mRNA from alignment at Ecto-sp13_S_contig8140:1776..2395+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8140.19486.1 ID=mRNA_Ecto-sp13_S_contig8140.19486.1|Name=mRNA_Ecto-sp13_S_contig8140.19486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=620bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8140:1776..2395+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCCATTCCCATATCTCAGACTGCCACAATCGACTTCCTGCCTTTGACT
GCGAACGAGGCATGGCATTCTCAATACGAGGAAGTCTACATTAGGTTGAT
GCAGGCAGCATATCGTGAACAACCAAGGGTTGGAAGGGGGGAAGATGAGG
TAGACACATCTCACTTCTGCAGCACATATCACGCCATATTCTCAGCATTG
ATTGGCCTTTTGATCATATCGTGTGTACCGGCACGAAGGATCCAACAACA
TCTGCCGCCTGTAAAAATGAGAAGCATGCCTCATGGAGCGGTATGTGGCA
TGTCAGGAGCGCCTGTCGAATCTGTCGCACGATTTTCCCAACCATGTAGG
TACTCGACGTCAGACCGTTGGATTGACTCTTGTGCCGTTTGATCAGAAAC
TGCTTCTTGTGCTCCCCGCAGTACACTACCAACGACCACAGGCGCAACAG
ATGCGTGACTCAAGCGGCTACCGAACACGATGCCCGCGGGAGTCGCAGCA
GAATGTCCAACAGTCAGGCGCGGAGCATCGCGCATTTGCATACGTCGGCA
CCTTCAAACCCATCTTGAGAGTGATGCTTTTTTGCCACCTCGCGACTACC
GGTACGGATGCTTAGCTTCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8140:1776..2395+

>mRNA_Ecto-sp13_S_contig8140.19486.1 ID=mRNA_Ecto-sp13_S_contig8140.19486.1|Name=mRNA_Ecto-sp13_S_contig8140.19486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8140:1776..2395+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCGGTATGTGGCATGTCAGGAGCGCCTGTCGAATCTGTCGCACGA
TTTTCCCAACCATGTAGGTACTCGACGTCAGACCGTTGGATTGACTCTTG
TGCCGTTTGATCAGAAACTGCTTCTTGTGCTCCCCGCAGTACACTACCAA
CGACCACAGGCGCAACAGATGCGTGACTCAAGCGGCTACCGAACACGATG
CCCGCGGGAGTCGCAGCAGAATGTCCAACAGTCAGGCGCGGAGCATCGCG
CATTTGCATACGTCGGCACCTTCAAACCCATCTTGAGAGTGATGCTTTTT
TGCCACCTCGCGACTACCGGTACGGATGCTTAG
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