mRNA_Ecto-sp13_S_contig814.19484.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig814.19484.1
Unique NamemRNA_Ecto-sp13_S_contig814.19484.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig814.19484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig814contigEcto-sp13_S_contig814:17472..19876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2010
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-27_000740.1
Cds size2010
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464086.3285294-CDS-Ecto-sp13_S_contig814:17471..180711681464086.3285294-CDS-Ecto-sp13_S_contig814:17471..18071Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig814 17472..18071 -
1681464086.3412743-CDS-Ecto-sp13_S_contig814:18466..198761681464086.3412743-CDS-Ecto-sp13_S_contig814:18466..19876Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig814 18467..19876 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig814.19484.1prot_Ecto-sp13_S_contig814.19484.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig814 17472..19876 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig814.19484.1

>prot_Ecto-sp13_S_contig814.19484.1 ID=prot_Ecto-sp13_S_contig814.19484.1|Name=mRNA_Ecto-sp13_S_contig814.19484.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=670bp
MTGGSGYYDNNPRDVQVTRRFPDAAITNRPHRGSSTSSSEIANKGGSGAS
TETLSTHDNDSESDVLGTRLVRNNLFPDTGTESLKSESRTAIQGNGGSLS
PPSRCGDDWSPRPAQDDQVVHSQLEKEKGEAVEFNDDDTAADGNSTKTDG
GRSSTADSSHYGSKAGLDVDSSELSRARGTFDTVSDLSCSGIFAGLSAAG
DDQESAQDSSSGSPNLARLVASPSGDDQDSDDIEDSHISHLVQDRRRWQL
RAFEAEYELASMRSFRAHLDSGGDETRGEGSRPVESAEHQDSCSAITQAP
AKSGEQLFSGVPPIDVDHESNGQWHTQAVNESSSSASSCSTGRLSVEATR
PVEDVLSAADEAQLLAAGSAESNHFAANRTGCGVTSDSNDLSQHVASDDD
GGKFLGIVDNDDEQEKNRTGSHCLLQEEVVHLKENLRQAELRQAAAEATI
ASVTQRARAAEVSREVKEIQIRNLEIRLARRTNTDNIHQQPCRRGRHFSG
GGENANVSTNLDFSRSRHEVFPVKEEEEEYPSSPCEPVQNNHGCPPDMIS
TDALRRSCISADRTIHGPSGPDFIPAKRESARRAMHIFRQSCVDFGARAT
RAGGMVSAAAAAVSETAKDVAHSATAAVGGENVLGQHKGERKAADRCSGI
GTDGGPVEAYWGSDYCTSM*
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mRNA from alignment at Ecto-sp13_S_contig814:17472..19876-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig814.19484.1 ID=mRNA_Ecto-sp13_S_contig814.19484.1|Name=mRNA_Ecto-sp13_S_contig814.19484.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig814:17472..19876- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCGGCGGTAGTGGATACTATGATAACAACCCAAGGGACGTGCAAGT
GACCAGAAGATTCCCCGACGCAGCGATAACGAACAGACCACACCGGGGCA
GCAGCACCTCGAGCAGCGAGATCGCCAACAAGGGCGGCAGTGGTGCTTCG
ACGGAGACCTTGTCCACCCATGACAATGACTCCGAGAGCGATGTTTTGGG
GACGCGCTTGGTCCGCAATAACCTCTTCCCTGATACTGGCACTGAAAGCC
TGAAAAGTGAAAGTCGCACGGCCATACAAGGTAACGGAGGAAGCCTGTCG
CCACCGTCGCGGTGCGGCGACGATTGGTCTCCAAGACCTGCCCAAGACGA
TCAAGTAGTGCACTCGCAGCTTGAAAAAGAAAAGGGTGAGGCCGTCGAAT
TTAACGATGACGACACCGCCGCGGATGGCAACTCGACGAAAACGGACGGT
GGCAGAAGCAGTACAGCGGACAGTTCCCACTATGGTTCAAAAGCTGGCCT
GGACGTTGATAGTAGTGAGTTGTCTCGAGCACGGGGGACCTTTGATACGG
TTTCTGATCTCTCTTGCTCTGGGATTTTTGCCGGACTTAGCGCTGCGGGT
GACGACCAAGAAAGCGCCCAGGACTCCTCCAGCGGATCGCCTAACCTCGC
TCGTTTGGTGGCTTCTCCTAGTGGTGATGATCAGGACAGTGACGACATTG
AGGATAGCCATATCAGTCATCTTGTCCAAGATAGACGTCGGTGGCAGCTT
CGAGCTTTCGAAGCCGAGTACGAGCTGGCCTCGATGCGATCCTTCCGTGC
TCATTTGGATAGCGGTGGCGACGAAACCAGGGGAGAAGGATCGCGACCAG
TAGAATCAGCAGAACACCAAGACTCTTGCTCCGCCATCACGCAAGCACCT
GCAAAGTCCGGAGAACAGCTTTTTTCGGGAGTGCCACCGATTGACGTCGA
TCATGAGTCTAACGGCCAATGGCATACGCAGGCAGTGAACGAATCGTCTT
CCTCGGCCTCTTCATGCTCCACAGGCAGGCTAAGCGTGGAGGCAACTCGG
CCAGTGGAGGACGTCTTGAGTGCCGCCGACGAAGCCCAGCTTTTAGCGGC
AGGGTCGGCAGAAAGCAACCATTTCGCAGCGAACAGAACCGGGTGCGGAG
TGACCAGTGATTCAAACGACTTATCCCAGCATGTCGCAAGCGATGATGAT
GGGGGCAAATTCTTGGGCATTGTCGATAACGATGATGAACAAGAAAAGAA
CAGGACGGGGAGTCACTGTCTACTACAGGAGGAAGTCGTCCACTTGAAGG
AGAACCTTCGACAAGCGGAACTTCGGCAGGCGGCCGCAGAGGCTACCATT
GCGAGTGTCACGCAGCGAGCGCGGGCGGCCGAGGTGTCTCGTGAGGTCAA
AGAAATCCAGGTCAGAAACTGTGAGAGGTTTAGTAGGGGGCGTGGTGATA
ATGTGCCTTTGACGTGCATGTGGGGCAAGCAGGACCGACTGCAGTAAGTT
TTTAAGGTGCCAAACCTGTTCGTGTCTGCGAGCACTTCCTTTCCTCGCGT
TTGCGAACGTACCCACAACGTAACGGTTCGGATTTCTCTGCTGGTTCGAC
CACCGGCTAGGTGAGCGTTGGTTTACATGCAAATCTGGTACATACAACTA
GAGTGTTTCGTGTGGTCCATTAACCGATCTATTATGCATCGAGAAAGCCT
TTTTATTTCTACGTTGTTGTCTCCAATTCAAGTAATGAACCCATTGTACA
ATCGGCGCCACCACGCTGTGTCCGAAAATATGCCGTGCTACATGCTGCCA
AACAGATCCGAAACCTCGAGATCAGGCTCGCCAGGCGCACGAATACCGAC
AACATCCACCAACAGCCATGCAGGAGGGGGAGACACTTCTCGGGTGGCGG
CGAGAACGCGAATGTCAGCACGAACCTCGATTTCTCCCGGTCACGACACG
AGGTATTTCCGGTGAAAGAAGAGGAGGAGGAATACCCATCGTCGCCATGT
GAGCCAGTTCAAAACAACCACGGGTGCCCCCCTGATATGATATCGACTGA
TGCGCTTCGTCGCAGCTGCATCTCCGCCGACCGTACCATTCATGGACCTT
CTGGACCCGACTTTATACCCGCAAAAAGGGAAAGTGCTCGGCGGGCAATG
CACATTTTCCGCCAGAGCTGTGTTGATTTCGGGGCACGAGCAACGAGGGC
AGGTGGTATGGTATCGGCAGCAGCGGCAGCTGTAAGCGAGACCGCCAAGG
ACGTCGCGCACTCCGCTACGGCGGCAGTAGGAGGAGAAAATGTTCTTGGA
CAGCACAAGGGGGAACGCAAGGCAGCGGATAGATGCTCTGGGATCGGAAC
CGATGGAGGTCCTGTCGAGGCGTACTGGGGTAGCGACTATTGCACATCGA
TGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig814:17472..19876-

>mRNA_Ecto-sp13_S_contig814.19484.1 ID=mRNA_Ecto-sp13_S_contig814.19484.1|Name=mRNA_Ecto-sp13_S_contig814.19484.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2010bp|location=Sequence derived from alignment at Ecto-sp13_S_contig814:17472..19876- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCGGCGGTAGTGGATACTATGATAACAACCCAAGGGACGTGCAAGT
GACCAGAAGATTCCCCGACGCAGCGATAACGAACAGACCACACCGGGGCA
GCAGCACCTCGAGCAGCGAGATCGCCAACAAGGGCGGCAGTGGTGCTTCG
ACGGAGACCTTGTCCACCCATGACAATGACTCCGAGAGCGATGTTTTGGG
GACGCGCTTGGTCCGCAATAACCTCTTCCCTGATACTGGCACTGAAAGCC
TGAAAAGTGAAAGTCGCACGGCCATACAAGGTAACGGAGGAAGCCTGTCG
CCACCGTCGCGGTGCGGCGACGATTGGTCTCCAAGACCTGCCCAAGACGA
TCAAGTAGTGCACTCGCAGCTTGAAAAAGAAAAGGGTGAGGCCGTCGAAT
TTAACGATGACGACACCGCCGCGGATGGCAACTCGACGAAAACGGACGGT
GGCAGAAGCAGTACAGCGGACAGTTCCCACTATGGTTCAAAAGCTGGCCT
GGACGTTGATAGTAGTGAGTTGTCTCGAGCACGGGGGACCTTTGATACGG
TTTCTGATCTCTCTTGCTCTGGGATTTTTGCCGGACTTAGCGCTGCGGGT
GACGACCAAGAAAGCGCCCAGGACTCCTCCAGCGGATCGCCTAACCTCGC
TCGTTTGGTGGCTTCTCCTAGTGGTGATGATCAGGACAGTGACGACATTG
AGGATAGCCATATCAGTCATCTTGTCCAAGATAGACGTCGGTGGCAGCTT
CGAGCTTTCGAAGCCGAGTACGAGCTGGCCTCGATGCGATCCTTCCGTGC
TCATTTGGATAGCGGTGGCGACGAAACCAGGGGAGAAGGATCGCGACCAG
TAGAATCAGCAGAACACCAAGACTCTTGCTCCGCCATCACGCAAGCACCT
GCAAAGTCCGGAGAACAGCTTTTTTCGGGAGTGCCACCGATTGACGTCGA
TCATGAGTCTAACGGCCAATGGCATACGCAGGCAGTGAACGAATCGTCTT
CCTCGGCCTCTTCATGCTCCACAGGCAGGCTAAGCGTGGAGGCAACTCGG
CCAGTGGAGGACGTCTTGAGTGCCGCCGACGAAGCCCAGCTTTTAGCGGC
AGGGTCGGCAGAAAGCAACCATTTCGCAGCGAACAGAACCGGGTGCGGAG
TGACCAGTGATTCAAACGACTTATCCCAGCATGTCGCAAGCGATGATGAT
GGGGGCAAATTCTTGGGCATTGTCGATAACGATGATGAACAAGAAAAGAA
CAGGACGGGGAGTCACTGTCTACTACAGGAGGAAGTCGTCCACTTGAAGG
AGAACCTTCGACAAGCGGAACTTCGGCAGGCGGCCGCAGAGGCTACCATT
GCGAGTGTCACGCAGCGAGCGCGGGCGGCCGAGGTGTCTCGTGAGGTCAA
AGAAATCCAGATCCGAAACCTCGAGATCAGGCTCGCCAGGCGCACGAATA
CCGACAACATCCACCAACAGCCATGCAGGAGGGGGAGACACTTCTCGGGT
GGCGGCGAGAACGCGAATGTCAGCACGAACCTCGATTTCTCCCGGTCACG
ACACGAGGTATTTCCGGTGAAAGAAGAGGAGGAGGAATACCCATCGTCGC
CATGTGAGCCAGTTCAAAACAACCACGGGTGCCCCCCTGATATGATATCG
ACTGATGCGCTTCGTCGCAGCTGCATCTCCGCCGACCGTACCATTCATGG
ACCTTCTGGACCCGACTTTATACCCGCAAAAAGGGAAAGTGCTCGGCGGG
CAATGCACATTTTCCGCCAGAGCTGTGTTGATTTCGGGGCACGAGCAACG
AGGGCAGGTGGTATGGTATCGGCAGCAGCGGCAGCTGTAAGCGAGACCGC
CAAGGACGTCGCGCACTCCGCTACGGCGGCAGTAGGAGGAGAAAATGTTC
TTGGACAGCACAAGGGGGAACGCAAGGCAGCGGATAGATGCTCTGGGATC
GGAACCGATGGAGGTCCTGTCGAGGCGTACTGGGGTAGCGACTATTGCAC
ATCGATGTGA
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