mRNA_Ecto-sp13_S_contig10169.195.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10169.195.1
Unique NamemRNA_Ecto-sp13_S_contig10169.195.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10169.195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10169contigEcto-sp13_S_contig10169:233..796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size564
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-12_000550.1
Cds size546
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462512.314077-CDS-Ecto-sp13_S_contig10169:232..7781681462512.314077-CDS-Ecto-sp13_S_contig10169:232..778Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10169 233..778 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462512.3245552-UTR-Ecto-sp13_S_contig10169:778..7961681462512.3245552-UTR-Ecto-sp13_S_contig10169:778..796Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10169 779..796 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10169.195.1prot_Ecto-sp13_S_contig10169.195.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10169 233..778 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10169.195.1

>prot_Ecto-sp13_S_contig10169.195.1 ID=prot_Ecto-sp13_S_contig10169.195.1|Name=mRNA_Ecto-sp13_S_contig10169.195.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=182bp
MMLNTLSGIKIAPFPARRHDVKLGSDKKRGVGTGIYPDDKFAALVCGLEA
MVHLGATAAGKARADAFLAPFRDISKRVRTFVARFRVGFMGEFGQMLVDN
VENAIDRDLLRVGAAAGEALDLLRARFPHSPPKGDLDQLDTPSITPMSFD
HTRQATDELTSMLLASVAVAPGSRGAGWVAAK
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mRNA from alignment at Ecto-sp13_S_contig10169:233..796-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10169.195.1 ID=mRNA_Ecto-sp13_S_contig10169.195.1|Name=mRNA_Ecto-sp13_S_contig10169.195.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=564bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10169:233..796- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTCGGAATCGGTGTTCATGATGCTCAACACTCTATCTGGCATCAAGAT
CGCGCCGTTCCCTGCACGCCGGCACGACGTTAAGCTCGGAAGCGACAAGA
AGAGAGGTGTCGGAACAGGTATTTACCCTGACGACAAGTTCGCAGCGTTG
GTGTGCGGGCTCGAGGCGATGGTACATCTCGGTGCGACCGCTGCGGGCAA
AGCTCGCGCTGACGCCTTTCTGGCGCCTTTTCGCGACATTTCCAAGCGCG
TGCGCACGTTCGTCGCTAGGTTTCGCGTCGGCTTTATGGGCGAGTTCGGC
CAGATGTTGGTGGACAACGTGGAAAATGCTATTGATCGAGACTTACTGAG
AGTGGGGGCGGCTGCTGGCGAGGCTTTGGACCTGTTGAGGGCACGCTTTC
CGCACTCGCCTCCAAAGGGTGACCTTGACCAGCTCGACACTCCGAGCATC
ACGCCGATGTCCTTTGACCACACGCGACAGGCCACGGATGAACTCACCAG
CATGCTTCTAGCTTCGGTGGCGGTGGCCCCGGGTTCTAGGGGGGCAGGAT
GGGTGGCGGCCAAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10169:233..796-

>mRNA_Ecto-sp13_S_contig10169.195.1 ID=mRNA_Ecto-sp13_S_contig10169.195.1|Name=mRNA_Ecto-sp13_S_contig10169.195.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=546bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10169:233..796- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGCTCAACACTCTATCTGGCATCAAGATCGCGCCGTTCCCTGCACG
CCGGCACGACGTTAAGCTCGGAAGCGACAAGAAGAGAGGTGTCGGAACAG
GTATTTACCCTGACGACAAGTTCGCAGCGTTGGTGTGCGGGCTCGAGGCG
ATGGTACATCTCGGTGCGACCGCTGCGGGCAAAGCTCGCGCTGACGCCTT
TCTGGCGCCTTTTCGCGACATTTCCAAGCGCGTGCGCACGTTCGTCGCTA
GGTTTCGCGTCGGCTTTATGGGCGAGTTCGGCCAGATGTTGGTGGACAAC
GTGGAAAATGCTATTGATCGAGACTTACTGAGAGTGGGGGCGGCTGCTGG
CGAGGCTTTGGACCTGTTGAGGGCACGCTTTCCGCACTCGCCTCCAAAGG
GTGACCTTGACCAGCTCGACACTCCGAGCATCACGCCGATGTCCTTTGAC
CACACGCGACAGGCCACGGATGAACTCACCAGCATGCTTCTAGCTTCGGT
GGCGGTGGCCCCGGGTTCTAGGGGGGCAGGATGGGTGGCGGCCAAA
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