mRNA_Ecto-sp13_S_contig8103.19447.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8103.19447.1
Unique NamemRNA_Ecto-sp13_S_contig8103.19447.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8103.19447.1 vs. uniprot
Match: D7FSM9_ECTSI (Tyrosinase-like protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSM9_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.350e-23
Identity = 55/82 (67.07%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:    1 KKYYTNAELYQLLDPNGDEVPYVYDNFEWPHCDEMGIHVG***RSTFGYVQLAATRLVPGNQSPLGPEEASRGDTGQEEPSR 246
            KKYYTNAELY LLDPNGDEVPYVYDNFEWPHCD                  LAATRLV GN S L PE ASRG T QEE SR
Sbjct:  653 KKYYTNAELYHLLDPNGDEVPYVYDNFEWPHCD------------------LAATRLVLGNVSLLRPEGASRGHTRQEESSR 716
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BLAST of mRNA_Ecto-sp13_S_contig8103.19447.1 vs. uniprot
Match: A0A6H5JFW1_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFW1_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.160e-15
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1 
Query:    1 KKYYTNAELYQLLDPNGDEVPYVYDNFEWPHCD 99
            KKYYTNAELYQLLDPNGDEVPYVYDNFEWPHCD
Sbjct:  510 KKYYTNAELYQLLDPNGDEVPYVYDNFEWPHCD 542
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BLAST of mRNA_Ecto-sp13_S_contig8103.19447.1 vs. uniprot
Match: A0A6H5KRY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRY5_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.020e-15
Identity = 43/67 (64.18%), Postives = 47/67 (70.15%), Query Frame = -3 
Query:  101 STIRPVEVKDETTMISSLLSTALPGLCPPCLLPRAPTATGSQEQALLQPAARSQRWNVIITQRGCPF 301
            STIRPV+V+DETT+ISSLL TALPGLCP CLLP A T   S+          SQR N IITQ GCPF
Sbjct:   17 STIRPVDVEDETTIISSLLWTALPGLCPHCLLPSASTVRCSR---------CSQRLNDIITQCGCPF 74
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BLAST of mRNA_Ecto-sp13_S_contig8103.19447.1 vs. uniprot
Match: A0A6H5K6J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6J0_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 4.740e-12
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 KKYYTNAELYQLLDPNGDEVPYVYDNFEWPHCDEMGIHV 117
            K+YYTNAELY LL P G ++PYVYDNF WPHCD  G+ +
Sbjct:  168 KRYYTNAELYDLLHPAGMQLPYVYDNFAWPHCDAQGVFI 206
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BLAST of mRNA_Ecto-sp13_S_contig8103.19447.1 vs. uniprot
Match: A0A6H5KFU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFU1_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 3.280e-11
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 KKYYTNAELYQLLDPNGDEVPYVYDNFEWPHCDEMGIHV 117
            K YYTNAELY LL P G ++PY+YDNF WPHCD  G+ +
Sbjct:  143 KGYYTNAELYDLLHPAGMQLPYMYDNFAWPHCDAQGVFI 181
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BLAST of mRNA_Ecto-sp13_S_contig8103.19447.1 vs. uniprot
Match: D8LAY9_ECTSI (Putative scytonemin-related tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY9_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 8.470e-11
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 KKYYTNAELYQLLDPNGDEVPYVYDNFEWPHCDEMGIHV 117
            K YYTNAELY LL P G ++PY+YDNF WPHCD  G+++
Sbjct:  611 KGYYTNAELYDLLHPAGMQLPYMYDNFAWPHCDAQGVYI 649
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BLAST of mRNA_Ecto-sp13_S_contig8103.19447.1 vs. uniprot
Match: A0A7S2R7L9_9STRA (Hypothetical protein n=3 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R7L9_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.700e-10
Identity = 25/38 (65.79%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    4 KYYTNAELYQLLDPNGDEVPYVYDNFEWPHCDEMGIHV 117
            KYYTN ELY LL P  D +PYVYDNFEWPHC  +G  +
Sbjct:  392 KYYTNKELYDLLSPTSDSLPYVYDNFEWPHCTFLGYRM 429
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BLAST of mRNA_Ecto-sp13_S_contig8103.19447.1 vs. uniprot
Match: A0A6H5JTC5_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC5_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 4.060e-10
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 KKYYTNAELYQLLDPNGDEVPYVYDNFEWPHCDEMGIHV 117
            K +YTNAELY LL P G ++PYVYDNF WPHCD  G+ +
Sbjct:  710 KGHYTNAELYDLLHPAGMQLPYVYDNFAWPHCDAQGVFI 748
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BLAST of mRNA_Ecto-sp13_S_contig8103.19447.1 vs. uniprot
Match: A0A6H5L8Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8Z7_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.010e-9
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 KKYYTNAELYQLLDPNGDEVPYVYDNFEWPHCDEMG 108
            K+YYTN ELY LL P+  ++PYVYDNF WPHC  +G
Sbjct:   76 KRYYTNMELYGLLRPDQSDLPYVYDNFAWPHCSVLG 111
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BLAST of mRNA_Ecto-sp13_S_contig8103.19447.1 vs. uniprot
Match: A0A7S2B4L7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B4L7_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.700e-9
Identity = 20/37 (54.05%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    7 YYTNAELYQLLDPNGDEVPYVYDNFEWPHCDEMGIHV 117
            +Y+N ELY L+DP  + +PYVYD F+W HC+E G+H+
Sbjct:   98 HYSNTELYGLMDPRNESMPYVYDTFKWSHCEEQGVHM 134
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8103.19447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSM9_ECTSI1.350e-2367.07Tyrosinase-like protein 2 n=1 Tax=Ectocarpus silic... [more]
A0A6H5JFW1_9PHAE1.160e-15100.00TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5KRY5_9PHAE2.020e-1564.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6J0_9PHAE4.740e-1266.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFU1_9PHAE3.280e-1164.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LAY9_ECTSI8.470e-1164.10Putative scytonemin-related tyrosinase n=1 Tax=Ect... [more]
A0A7S2R7L9_9STRA3.700e-1065.79Hypothetical protein n=3 Tax=Rhizochromulina marin... [more]
A0A6H5JTC5_9PHAE4.060e-1064.10TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5L8Z7_9PHAE1.010e-963.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2B4L7_9STRA1.700e-954.05Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8103contigEcto-sp13_S_contig8103:2992..3951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size384
Hectar predicted targeting categoryother localisation
Exons2
Cds size261
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464083.367027-UTR-Ecto-sp13_S_contig8103:2991..30681681464083.367027-UTR-Ecto-sp13_S_contig8103:2991..3068Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8103 2992..3068 -
1681464083.4025822-UTR-Ecto-sp13_S_contig8103:3905..39511681464083.4025822-UTR-Ecto-sp13_S_contig8103:3905..3951Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8103 3906..3951 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464083.3783872-CDS-Ecto-sp13_S_contig8103:3068..32761681464083.3783872-CDS-Ecto-sp13_S_contig8103:3068..3276Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8103 3069..3276 -
1681464083.392924-CDS-Ecto-sp13_S_contig8103:3852..39051681464083.392924-CDS-Ecto-sp13_S_contig8103:3852..3905Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8103 3853..3905 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8103.19447.1prot_Ecto-sp13_S_contig8103.19447.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8103 3069..3905 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8103.19447.1

>prot_Ecto-sp13_S_contig8103.19447.1 ID=prot_Ecto-sp13_S_contig8103.19447.1|Name=mRNA_Ecto-sp13_S_contig8103.19447.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
MGTRCPTSTTTSNGLIVMKWASTLGDDDVPPLATCSWLQQGLFLGTSRRW
GPRKQAGGTQARKSRREQRRYHGGFVLYLNWPDGGR*
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mRNA from alignment at Ecto-sp13_S_contig8103:2992..3951-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8103.19447.1 ID=mRNA_Ecto-sp13_S_contig8103.19447.1|Name=mRNA_Ecto-sp13_S_contig8103.19447.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=960bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8103:2992..3951- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGAAGTACTACACCAACGCGGAACTGTACCAGCTGCTGGACCCCAATGG
GGACGAGGTGCCCTACGTCTACGACAACTTCGAATGGCCTCATTGTGATG
TGAGTTGAGGCTGCAGGGGGAGGTGTTGTCCTTGTCGTTTTGATGCCCTT
GGAGAGCGCCGGTGATGTAACCCCGTGACTTCAGTTGATGGGTAGGGTGT
CGGCAGTCGTTCGCGTGCTTTCATGTCTTCGTTGAGACGCGTATTTCGGC
TGAGACAAACGGGGGCCCTTTCGAACGGAAATTCCCTCTTCCATGGTCGC
ACTTGCCCAGCAAGGTTATCCCACAGCTAGGTATGTTGATATGCCAATTT
GTCGAGAGGCAGCTCATGACCCGATCATGATATGGTCTGTGGGGCCGTGT
GGGCAAGATCGCCGTCTGGTTTGGTGTCATGGCACTCACTCACATCCAGG
GAGAAAGACGAGTGCGTGCCGAATGAAAAAGCTTCCCAAAATGTTGCTTG
ACCGGATACTTTTCACCACATCCGTCTCGAGCCGCCGTAGCGACTTTGTC
GTCGTCACAGTCATGGCTTAGCACGCGTGGCAGACAGCCGCATCGTCTTG
AAAAATGACGGTGATGCTGAGGCTCGTGTGGTGTGTCCTCAACCCCGGCC
GCTCTCGCTTCGATCTATTGCGCAGGAAATGGGCATCCACGTTGGGTGAT
GATGACGTTCCACCTTTGGCTACGTGCAGCTGGCTGCAACAAGGCTTGTT
CCTGGGAACCAGTCGCCGTTGGGGCCCGAGGAAGCAAGCAGGGGGGACAC
AGGCCAGGAAGAGCCGTCGAGAGCAGCGACGATATCATGGTGGTTTCGTC
CTTTACCTCAACTGGCCGGATGGTGGACGGTGAACAGACCGTACCGCACA
GGAATGTGACGTATGTATGTCATGAATGGATGTGTATCAACATGTGAAGT
TGCGTGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8103:2992..3951-

>mRNA_Ecto-sp13_S_contig8103.19447.1 ID=mRNA_Ecto-sp13_S_contig8103.19447.1|Name=mRNA_Ecto-sp13_S_contig8103.19447.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8103:2992..3951- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGACGAGGTGCCCTACGTCTACGACAACTTCGAATGGCCTCATTGT
GATGAAATGGGCATCCACGTTGGGTGATGATGACGTTCCACCTTTGGCTA
CGTGCAGCTGGCTGCAACAAGGCTTGTTCCTGGGAACCAGTCGCCGTTGG
GGCCCGAGGAAGCAAGCAGGGGGGACACAGGCCAGGAAGAGCCGTCGAGA
GCAGCGACGATATCATGGTGGTTTCGTCCTTTACCTCAACTGGCCGGATG
GTGGACGGTGA
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