prot_Ecto-sp13_S_contig8094.19437.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8094.19437.1
Unique Nameprot_Ecto-sp13_S_contig8094.19437.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length208
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8094.19437.1 vs. uniprot
Match: A0A6H5K263_9PHAE (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K263_9PHAE)

HSP 1 Score: 360 bits (924), Expect = 7.510e-123
Identity = 180/208 (86.54%), Postives = 185/208 (88.94%), Query Frame = 0 
Query:    1 MYHHAGGPQVDGPQQMYLQGTPRSLPPGDDDLPAAGVTQMGSAWVQLKTYSAQPGPPYRGVRFNRMTNTWGAMVSYKGREVEISCHEHEEEAALAHDRRVLELFGAGSRVNFQYSGLVDRGTMQVLGLRSADGTEIPFRTGGXXXXXEQSLSGVSPSHTLPARPPSSPGGTTGVEDTPGAGRWDGERHVTPGRQLPRAPGMGVEGPRE 208
            MYHHA GPQ  GPQQMYL+G P SLP G+D  PAAG+TQ G  WVQLKTYS QPGPPYRGVRFNRMTNTWGAMVSYKGREVEISCHEHEEEAALAHDRRVLELFGAGSRVNFQYSGLVDRGTM+VLGLRSADGTEIPFRTGG     EQ LSG+SPSHT PAR P SPGGT GVEDTPGAGRWDGERHVTP RQLPRAPGMGVEGPRE
Sbjct:   44 MYHHASGPQAPGPQQMYLKGKPGSLPHGNDP-PAAGITQTGPVWVQLKTYSTQPGPPYRGVRFNRMTNTWGAMVSYKGREVEISCHEHEEEAALAHDRRVLELFGAGSRVNFQYSGLVDRGTMRVLGLRSADGTEIPFRTGGGGGG-EQGLSGMSPSHTPPARLPPSPGGTAGVEDTPGAGRWDGERHVTPVRQLPRAPGMGVEGPRE 249
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8094.19437.1 vs. uniprot
Match: D8LNL0_ECTSI (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNL0_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 3.820e-64
Identity = 99/103 (96.12%), Postives = 99/103 (96.12%), Query Frame = 0 
Query:   40 MGSAWVQLKTYSAQPGPPYRGVRFNRMTNTWGAMVSYKGREVEISCHEHEEEAALAHDRRVLELFGAGSRVNFQYSGLVDRGTMQVLGLRSADGTEIPFRTGG 142
            MG AWVQLKTYSAQPGPPYRGVRFNRMTN WGAMVS KGREVEISCHEHEEEAALAHDRRVLELFGAGSRVNFQYSGLVDRGTMQVLGLRSADGTEIPF TGG
Sbjct:    1 MGPAWVQLKTYSAQPGPPYRGVRFNRMTNAWGAMVSCKGREVEISCHEHEEEAALAHDRRVLELFGAGSRVNFQYSGLVDRGTMQVLGLRSADGTEIPFPTGG 103
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8094.19437.1 vs. uniprot
Match: D8LNL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNL1_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 2.600e-22
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 0 
Query:  154 VSPSHTLPARPPSSPGGTTGVEDTPGAGRWDGERHVTPGRQLPRAPGMGVEGPRE 208
            +SPSHTLPAR P SPG  TGVEDTPGAGRWDGERHVTP RQLP+APGMGVEGPRE
Sbjct:    1 MSPSHTLPARLPPSPGRMTGVEDTPGAGRWDGERHVTPSRQLPKAPGMGVEGPRE 55
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8094.19437.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K263_9PHAE7.510e-12386.54AP2/ERF domain-containing protein n=1 Tax=Ectocarp... [more]
D8LNL0_ECTSI3.820e-6496.12AP2/ERF domain-containing protein n=1 Tax=Ectocarp... [more]
D8LNL1_ECTSI2.600e-2287.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036955AP2/ERF domain superfamilyGENE3D3.30.730.10coord: 57..115
e-value: 2.8E-6
score: 29.0
IPR001471AP2/ERF domainPROSITEPS51032AP2_ERFcoord: 57..113
score: 9.967
IPR016177DNA-binding domain superfamilySUPERFAMILY54171DNA-binding domaincoord: 57..115

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8094contigEcto-sp13_S_contig8094:66..6885 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8094.19437.1mRNA_Ecto-sp13_S_contig8094.19437.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8094 66..6885 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8094.19437.1 ID=prot_Ecto-sp13_S_contig8094.19437.1|Name=mRNA_Ecto-sp13_S_contig8094.19437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=208bp
MYHHAGGPQVDGPQQMYLQGTPRSLPPGDDDLPAAGVTQMGSAWVQLKTY
SAQPGPPYRGVRFNRMTNTWGAMVSYKGREVEISCHEHEEEAALAHDRRV
LELFGAGSRVNFQYSGLVDRGTMQVLGLRSADGTEIPFRTGGGGGGGEQS
LSGVSPSHTLPARPPSSPGGTTGVEDTPGAGRWDGERHVTPGRQLPRAPG
MGVEGPRE
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036955AP2/ERF_dom_sf
IPR001471AP2/ERF_dom
IPR016177DNA-bd_dom_sf