mRNA_Ecto-sp13_S_contig8090.19432.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8090.19432.1
Unique NamemRNA_Ecto-sp13_S_contig8090.19432.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8090.19432.1 vs. uniprot
Match: D7FTM0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM0_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.420e-18
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 2
Query:  188 EEERVCEGRTLKRSNKSTFMGFLPFGKRGFLDRLARERAQAHVGEATLKLTSKGI 352
            ++  + EGRTLK+S  STFMGFLPFGKRGFL R AR+RA+AH+GEATLKLTSKGI
Sbjct:   64 KKNALREGRTLKKSKMSTFMGFLPFGKRGFLHRRARDRAEAHLGEATLKLTSKGI 118          
BLAST of mRNA_Ecto-sp13_S_contig8090.19432.1 vs. uniprot
Match: D7G9A5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A5_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 3.640e-15
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 2
Query:  149 RGLSFRNHPAEVGEEERVCEGRTLKRSNKSTFMGFLPFGKRGFLDRLARERAQAHVGEATLKLTSKG 349
            R L   N  A + +++   EG+TL+R   +T MGFLPFGK GFL R ARE A+AHVGEATL +T KG
Sbjct:    5 RALRSENIAARLEKKKAALEGQTLRRGKVATLMGFLPFGKHGFLRRRAREHAEAHVGEATLSITKKG 71          
BLAST of mRNA_Ecto-sp13_S_contig8090.19432.1 vs. uniprot
Match: D7G9B0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B0_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.520e-13
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 2
Query:  149 RGLSFRNHPAEVGEEERVCEGRTLKRSNKSTFMGFLPFGKRGFLDRLARERAQAHVGEATLKLTSKG 349
            R L   N  A + ++    EGRTL+R   +T MGFLPFGK GFL R ARE A+AH+GEATL +T KG
Sbjct:  369 RALRSENIAARLEKKRAALEGRTLRRGKVATLMGFLPFGKHGFLRRRAREHAEAHMGEATLSITKKG 435          
BLAST of mRNA_Ecto-sp13_S_contig8090.19432.1 vs. uniprot
Match: A0A6H5KKU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKU9_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.070e-10
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 2
Query:  182 VGEEERVCEGRTLKRSNKSTFMGFLPFGKRGFLDRLARERAQAHVGEATLKLTSKG 349
            +G  E + EGR LKRS  +  MG LPFGK GF  R ARE A+AH+ EATLKLT++G
Sbjct:  474 LGRSEALREGRELKRSKMAAIMGVLPFGKNGFRRRRAREHAEAHLMEATLKLTNRG 529          
BLAST of mRNA_Ecto-sp13_S_contig8090.19432.1 vs. uniprot
Match: A0A6H5L4D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4D4_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.870e-10
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 2
Query:  188 EEERVC-EGRTLKRSNKSTFMGFLPFGKRGFLDRLARERAQAHVGEATLKLTSKG 349
            E++RV  EGRTL+    +T MGF+PFGK GFL R ARE  +A++GEATL +T+KG
Sbjct:  311 EKKRVAREGRTLREGKLATLMGFMPFGKHGFLRRRAREHVEAYMGEATLSITNKG 365          
BLAST of mRNA_Ecto-sp13_S_contig8090.19432.1 vs. uniprot
Match: D8LJ57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ57_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 1.120e-8
Identity = 33/68 (48.53%), Postives = 42/68 (61.76%), Query Frame = 2
Query:  149 RGLSFRNHPAEVGEEERVCEGRTLKRSNK-STFMGFLPFGKRGFLDRLARERAQAHVGEATLKLTSKG 349
            +GL      A + + +   EGR L +  K +  MGFLP GK GF  R ARE A+AH+GEATL LT+KG
Sbjct:  398 QGLRSEIFEANLEKRKAALEGRELPKKGKVAALMGFLPLGKNGFRRRRAREHAEAHLGEATLSLTTKG 465          
BLAST of mRNA_Ecto-sp13_S_contig8090.19432.1 vs. uniprot
Match: A0A6H5KH58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH58_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 5.400e-8
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 2
Query:  206 EGRTLKRSNKSTFMGFLPFGKRGFLDRLARERAQAHVGEATLKLTSKG 349
            EGR LKRS  +  M  LPFGK GF  R ARE A+AH+ EATLKLT++G
Sbjct:  552 EGRELKRSKVAAIMSALPFGKNGFRRRRAREHAEAHLMEATLKLTNRG 599          
BLAST of mRNA_Ecto-sp13_S_contig8090.19432.1 vs. uniprot
Match: D8LNB2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNB2_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.300e-7
Identity = 29/48 (60.42%), Postives = 33/48 (68.75%), Query Frame = 2
Query:  206 EGRTLKRSNKSTFMGFLPFGKRGFLDRLARERAQAHVGEATLKLTSKG 349
            EG  LKRS  +   G LPFGK GF  R  RE A+AH+ EATLKLT+KG
Sbjct:   70 EGGELKRSKMAAITGVLPFGKNGFRRRREREHAEAHLMEATLKLTNKG 117          
BLAST of mRNA_Ecto-sp13_S_contig8090.19432.1 vs. uniprot
Match: A0A6H5K5J3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5J3_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.380e-7
Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = 2
Query:  206 EGRTLKRSNKSTFMGFLPFGKRGFLDRLARERAQAHVGEATLKLTSKG 349
            EG  LKRS  +  M  LPFGK GF  R ARE A+AH+ EATLKLT++G
Sbjct:  571 EGHELKRSKMAAIMSVLPFGKNGFRRRRAREHAEAHLMEATLKLTNRG 618          
BLAST of mRNA_Ecto-sp13_S_contig8090.19432.1 vs. uniprot
Match: D8LNB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNB6_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.210e-6
Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = 2
Query:  206 EGRTLKRSNKSTFMGFLPFGKRGFLDRLARERAQAHVGEATLKLTSKG 349
            EG  LKRS  +   G LPFGK GF  R  RE A+AH+ EATLKLT++G
Sbjct:  518 EGGELKRSKMAAITGVLPFGKNGFRRRREREHAEAHLMEATLKLTNRG 565          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8090.19432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FTM0_ECTSI1.420e-1874.55Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G9A5_ECTSI3.640e-1555.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G9B0_ECTSI1.520e-1355.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKU9_9PHAE1.070e-1058.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4D4_9PHAE1.870e-1058.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ57_ECTSI1.120e-848.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KH58_9PHAE5.400e-862.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNB2_ECTSI1.300e-760.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5J3_9PHAE1.380e-760.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNB6_ECTSI1.210e-658.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8090contigEcto-sp13_S_contig8090:1793..2146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size354
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size111
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464082.019852-CDS-Ecto-sp13_S_contig8090:1792..19031681464082.019852-CDS-Ecto-sp13_S_contig8090:1792..1903Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8090 1793..1903 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464082.0314245-UTR-Ecto-sp13_S_contig8090:1903..21461681464082.0314245-UTR-Ecto-sp13_S_contig8090:1903..2146Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8090 1904..2146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8090.19432.1prot_Ecto-sp13_S_contig8090.19432.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8090 1793..1903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8090.19432.1

>prot_Ecto-sp13_S_contig8090.19432.1 ID=prot_Ecto-sp13_S_contig8090.19432.1|Name=mRNA_Ecto-sp13_S_contig8090.19432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=37bp
MVYAAPADGSVVFATSTGRVPRDEEGRATGPSRRSA*
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mRNA from alignment at Ecto-sp13_S_contig8090:1793..2146+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8090.19432.1 ID=mRNA_Ecto-sp13_S_contig8090.19432.1|Name=mRNA_Ecto-sp13_S_contig8090.19432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8090:1793..2146+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTTACGCCGCGCCCGCCGATGGCTCCGTAGTGTTCGCAACCTCCAC CGGGAGGGTGCCCCGGGATGAGGAAGGGCGGGCAACGGGTCCCTCCCGCA GAAGCGCCTGACCCTCATCGCTGCCAACGAGCGACTGATGGCCAAGGTCG AGGACTTTCGTTCCGAAATCATCCTGCGGAGGTTGGTGAAGAAGAACGTG TGTGTGAGGGTCGGACACTTAAAAGGTCGAATAAGTCCACCTTCATGGGC TTCTTGCCGTTCGGGAAGCGCGGCTTCCTCGACCGGCTAGCGCGGGAACG CGCCCAGGCTCATGTGGGGGAGGCCACGCTGAAGCTCACCAGCAAGGGTA TACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8090:1793..2146+

>mRNA_Ecto-sp13_S_contig8090.19432.1 ID=mRNA_Ecto-sp13_S_contig8090.19432.1|Name=mRNA_Ecto-sp13_S_contig8090.19432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8090:1793..2146+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTTACGCCGCGCCCGCCGATGGCTCCGTAGTGTTCGCAACCTCCAC
CGGGAGGGTGCCCCGGGATGAGGAAGGGCGGGCAACGGGTCCCTCCCGCA
GAAGCGCCTGA
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