mRNA_Ecto-sp13_S_contig809.19431.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig809.19431.1 vs. uniprot
Match: A0A6H5JF97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF97_9PHAE) HSP 1 Score: 653 bits (1685), Expect = 6.290e-222 Identity = 309/321 (96.26%), Postives = 316/321 (98.44%), Query Frame = 1
Query: 1 LNTRLAADAMMEGLAWEARRYDNRDGWVVSTVQASSPCRKLLKTLSDTLSHSRRHGVGRARGTLNWEMSIAQHGGELEATSGSERSWMRALAMAMQQKIRLEDLYHTWYSCGRLHGVQAFCGKPQCPRCWKYRNVGFREQRVRFSNNWTGAPSEVSGGSGTLRGGNVKIAKTDDRQWMAESGTDVEIYSNRDAMISNRPGPAGTCSLARVAFFAEHVGNPPLGVDTTGEKTLWVAVAEYVTAGIGQDKVIDAATRHPIMRRRKRLSFFPAQAIRRVVHMYHVCVPNKCKAVSDAGKAPVWRHDLSGENNRYIHNEHFHSVV 963
LNTRLAADAMMEGLAWEARRYDNRDGWVVSTVQASSPCRKLLKTLSDTLSHSR+HGVGRARGT+NWEMSIAQHGGELEATSGSERSWMRALAMAMQQ RLEDLYHTWYSCGRLHGVQAFCGKPQCPRCWKYRNVGFREQRVRFSNNWTGAPSEVSGGSGTLRGGNV+IAKT+DRQWMAESGTDVEIYSNRDAMISN+PGPAGTCSLARVAFFAEHVGNPPLGVDTTGEKTLWVAVAEYVTAGIGQDK +DAAT HPIMRRRKRLSFFPA+AIRRVVHMYHVCVPNKCKAVSDAGKAPVWRHDLSGENNRYIHNEHFHSV
Sbjct: 538 LNTRLAADAMMEGLAWEARRYDNRDGWVVSTVQASSPCRKLLKTLSDTLSHSRKHGVGRARGTVNWEMSIAQHGGELEATSGSERSWMRALAMAMQQTFRLEDLYHTWYSCGRLHGVQAFCGKPQCPRCWKYRNVGFREQRVRFSNNWTGAPSEVSGGSGTLRGGNVQIAKTNDRQWMAESGTDVEIYSNRDAMISNKPGPAGTCSLARVAFFAEHVGNPPLGVDTTGEKTLWVAVAEYVTAGIGQDKFVDAATGHPIMRRRKRLSFFPARAIRRVVHMYHVCVPNKCKAVSDAGKAPVWRHDLSGENNRYIHNEHFHSVA 858
BLAST of mRNA_Ecto-sp13_S_contig809.19431.1 vs. uniprot
Match: A0A6H5JQD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD2_9PHAE) HSP 1 Score: 352 bits (903), Expect = 1.230e-111 Identity = 173/326 (53.07%), Postives = 224/326 (68.71%), Query Frame = 1
Query: 1 LNTRLAADAMMEGLAWEARRYDNRDG-WVVSTVQASSPCRKLLKTLSDTLSHSRRHGVGRARGTLNWEMSIAQHGGELEATSGSERSWMRALAMAMQQKIRLEDLYHTWYSCGRLHGVQAFCGKPQCPRCWKYRNVGFREQRVRFSNNWTGAPSEVSGGSGTLRGGNVKIAKTDDRQWMAES---GTDVEIYSNRDAMISNRPGPAGTCSLARVAFFAEHVGNPPLGVDTTGEKTLWVAVAEYVTAGIGQDKVIDAATRHPIMRRRKRLSFFPAQAIRRVVHMYHVCV-PNKCKAVSDAGKAPVWRHDLSGENNRYIHNEHFHSVV 963
LNTR+AA AMMEG+ W ARRY + W+ ++AS CRKL++TL D+ SR+HGV R R T+ W+M I G + A ++ W+ A+A A + + LY WYSCGR HG +A C +C RCWK+R GFR R NNWTGAP+ SGG+GT+RG V++A+ ++R+WM GTDVEI+ DA+ + RPGPAGTC+L +VA+F EHVGNPP G DT GE T+WVAVAEYV+A +GQ + DAAT HP+MR R LSFFPA+AIRRVV +YH C CKAVS+ KAPVW+H LS +N +++NEHFHSV+
Sbjct: 99 LNTRMAATAMMEGMEWSARRYSRKQRTWLTERIKASPACRKLMRTLLDSSKVSRKHGVSRVRRTVEWKMDITNKGKSITAAPDNDIRWIEAIAKA-SKGFDPDALYRRWYSCGRPHGEEARCSGLRCIRCWKFRVNGFRHTEARCFNNWTGAPARASGGTGTVRGCPVEMAEPNNRRWMFAPYPCGTDVEIFFTPDALAAQRPGPAGTCTLGKVAYFIEHVGNPPQGEDTRGEPTVWVAVAEYVSAAVGQSTMRDAATGHPVMRLRDTLSFFPAEAIRRVVQVYHACAYSGGCKAVSENNKAPVWKHKLSPGDN-FLYNEHFHSVL 422
BLAST of mRNA_Ecto-sp13_S_contig809.19431.1 vs. uniprot
Match: A0A6H5KYQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ6_9PHAE) HSP 1 Score: 352 bits (903), Expect = 6.930e-105 Identity = 173/326 (53.07%), Postives = 224/326 (68.71%), Query Frame = 1
Query: 1 LNTRLAADAMMEGLAWEARRYDNRDG-WVVSTVQASSPCRKLLKTLSDTLSHSRRHGVGRARGTLNWEMSIAQHGGELEATSGSERSWMRALAMAMQQKIRLEDLYHTWYSCGRLHGVQAFCGKPQCPRCWKYRNVGFREQRVRFSNNWTGAPSEVSGGSGTLRGGNVKIAKTDDRQWMAES---GTDVEIYSNRDAMISNRPGPAGTCSLARVAFFAEHVGNPPLGVDTTGEKTLWVAVAEYVTAGIGQDKVIDAATRHPIMRRRKRLSFFPAQAIRRVVHMYHVCV-PNKCKAVSDAGKAPVWRHDLSGENNRYIHNEHFHSVV 963
LNTR+AA AMMEG+ W ARRY + W+ ++AS CRKL++TL D+ SR+HGV R R T+ W+M I G + A ++ W+ A+A A + + LY WYSCGR HG +A C +C RCWK+R GFR R NNWTGAP+ SGG+GT+RG V++A+ ++R+WM GTDVEI+ DA+ + RPGPAGTC+L +VA+F EHVGNPP G DT GE T+WVAVAEYV+A +GQ + DAAT HP+MR R LSFFPA+AIRRVV +YH C CKAVS+ KAPVW+H LS +N +++NEHFHSV+
Sbjct: 720 LNTRMAATAMMEGMEWSARRYSRKQRTWLTERIKASPACRKLMRTLLDSSKVSRKHGVSRVRRTVEWKMDITNKGKSITAAPDNDIRWIEAIAKA-SKGFDPDALYRRWYSCGRPHGEEARCSGLRCIRCWKFRVNGFRHTEARCFNNWTGAPARASGGTGTVRGCPVEMAEPNNRRWMFAPYPCGTDVEIFFTPDALAAQRPGPAGTCTLGKVAYFIEHVGNPPQGEDTRGEPTVWVAVAEYVSAAVGQSTMRDAATGHPVMRLRDTLSFFPAEAIRRVVQVYHACAYSGGCKAVSENNKAPVWKHKLSPGDN-FLYNEHFHSVL 1043
BLAST of mRNA_Ecto-sp13_S_contig809.19431.1 vs. uniprot
Match: A0A6H5LF20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LF20_9PHAE) HSP 1 Score: 141 bits (355), Expect = 1.270e-32 Identity = 107/337 (31.75%), Postives = 161/337 (47.77%), Query Frame = 1
Query: 4 NTRLAADAMMEGLAWEARRYDNRDGWVVSTVQASSPCRKLLKTLSDTLSHSRRHGVGRARGTLNWEMSIAQHG-----GELEAT-SGSE-RSWMRALAMAMQQKIRLEDLYHTWYSCGRLHGVQAFCGKPQCPRCWKYRNV--GFREQRVRFSNNWTGAPSEVSGGSGTLRGGNVKIAKTDD--RQWMAESGTDVEIYSNRDAMISNRPGPAGTCSLARVAFFAEHVGNPPLGVDTT-----GEKTLWVAVAEYVTAGIGQDKVIDAATRHPIMRRRKRLSFFPAQAIRRVVHMYHVCVPN---KCKAVSDAGKAPVWRHDLSGENNRYIHNEHFHS 957
N A ++ + + W+A ++N + V A CR++L+ + L + GT HG +L+ +G E ++W + + L+ Y ++ CGR+ G +A C C CW+ R G V N+W GAP E + G+GT+RG VK A + A G+DVEIY + R G T +L +VAFF EH GNP D + GE T+W+AV+EYVTAG+G + + T + R L+F+P AIRRVVHM H C + C V ++ + WR +L G + Y+ N++FHS
Sbjct: 89 NDNQALKSLSDSVTWDACGFENGKE-MRKEVTAGPLCREVLQDVFAFLPAMQLSPASVEDGTTTGRQGGRPHGYQQWTADLKGVDAGIELQTWQEEVFKMLPSPQELDQHYADYFGCGRIDG-EAPCNTRTCSYCWRNRTYKDGLVHDSVEVFNHWGGAPGEANAGTGTVRGCPVKDAGRHSGWTRSTASRGSDVEIYLTANDQREGRYGLEQT-TLGKVAFFFEHQGNPWRRDDESNVLPEGEYTIWMAVSEYVTAGVGNNLQLHHTTGLAEFKMRHTLTFYPTPAIRRVVHMMHACPTSGESACGLVRESKRQ--WRCNLLGTST-YLLNKYFHS 419
BLAST of mRNA_Ecto-sp13_S_contig809.19431.1 vs. uniprot
Match: A0A6H5K975_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K975_9PHAE) HSP 1 Score: 129 bits (324), Expect = 7.510e-28 Identity = 90/257 (35.02%), Postives = 116/257 (45.14%), Query Frame = 1
Query: 181 RGTLNWEMSIAQHGGELEATSGSERSWMRA-----LAMAMQQKIRLEDLYHTWYSCGRLHGVQAFCGKPQCPRCWKYRNVGFREQRVRFSNNWTGAPSEVSGGSGTLRGGNVKIAKTDDRQWMAES---GTDVEIYSNRDAMISNRPGPAGTCSLARVAFFAEHVGNPPLG-----VDTTGEKTLWVAVAEYVTAGIGQDKVIDAATRHPIMRRRKRLSFFPAQAIRRVVHMYHVCVP---NKCKAVSDAGKAPVWR 903
R TL S+ L T + R W RA + + ++LE LY CGR C C CW+ N G V N+W AP E S G+GTLRGG VK A +WM + DVE+Y + A S A T +L R+A F EH GN V GE T+WVAV EYVT G+GQ + ++ T + R+ + FF A IR +VHM H C + C + GK WR
Sbjct: 292 RQTLREVFSVLPLAPALSDTPSAGRPWDRADWQSVVRGTLPTALQLEALYKVKLGCGREESGP-LCNDDVCAFCWR-GNSGLHNGSVTCFNHWGNAPEEASAGTGTLRGGPVKDAAEFGNKWMIQETSRANDVELYVDTSARRSGERRQAAT-TLGRIACFFEHQGNDSRHLVDGKVQEGGEWTIWVAVKEYVTVGMGQGRKVNYPTGCDVFYLRRSVQFFHASGIRSMVHMMHACATTGASSCCLLRGEGKKDEWR 545
BLAST of mRNA_Ecto-sp13_S_contig809.19431.1 vs. uniprot
Match: A0A6H5K953_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K953_9PHAE) HSP 1 Score: 110 bits (275), Expect = 2.870e-21 Identity = 103/375 (27.47%), Postives = 155/375 (41.33%), Query Frame = 1
Query: 4 NTRLAADAMMEGLAWEARRYDNRDGWVVSTVQASSP-CRKLLKTLSDTLSHSRRHGV--------------GRARGTLNWEMSIAQHGGELEAT--------SGSERSWMRALAMAMQQKIRLEDLYHT--WYSCGRLHGVQAFCGKPQCPRCWKYRNVGFREQRVRFSNNWTGAPSEVSGGSGTLRGGNVKIAKTDD---RQWMAESGT--DVEIYSNRDAMISNRPGPAGTCSLARVAFFAEHVGNPPLGVDTTGEKTL-WVAVAEYVTAGIGQDKVIDAATRHP---IMRRRKRL-SFFPAQAIRRVVHMYHVCV-----PNKCKAVS----------DAGKAP-VWRHDL--------SGENNRYIHNEHF 951
NT LA + + A RY V+ S P CR++L L D L V G+ +G+ W+ +I GG+L + +G++ W ++ + L W+SCGR G C +CP CW+ + + + + S G P + S G G +GG+VK A R W G VEI+++ +A + G G +L + +F + GNP G + + +V V EYVT G G+ K D+ T HP + R+ S +P AIRR VHMYH+C P + D GK VW+H SG+ + Y+ NEH+
Sbjct: 620 NTFLALHRLTSPEPYTANRYSYSSKTKVTEQVTSGPGCRRILAALGDRLRGGLNGVVDADASTTPTASMKDGKYQGSAKWQATILG-GGDLACSEDGGGSVAAGAKEPWEVCVSEGPVRPHAGAILRANAEWFSCGRSDGALDDCADARCPLCWEGGHESLKARNISCSRFKHGVPPKTSSGLGRFKGGDVKKATATGPTPRHWCVGDGRGESVEIFTSPEAKRKDLSGD-GHVTLGLILYFFDLDGNPRPGPTAAADPMMEYVLVYEYVTRGAGRSKKADSVTLHPTYWLQGGGNRVPSVYPVDAIRRHVHMYHLCPVSHFEPRAANTSALAETCGLRDDDTGKGGNVWKHHYILAAAKPPSGQRDAYMLNEHW 992
BLAST of mRNA_Ecto-sp13_S_contig809.19431.1 vs. uniprot
Match: D7FWW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW6_ECTSI) HSP 1 Score: 90.5 bits (223), Expect = 5.040e-15 Identity = 46/117 (39.32%), Postives = 68/117 (58.12%), Query Frame = 1
Query: 4 NTRLAADAMMEGLAWEARRYDN-RDGWVVSTVQASSPCRKLLKTLSDTLSHSRRHGVGRARGTLNWEMSIAQHGGELEATSGSERSWMRALAMAMQQK----IRLEDLYHTWYSCGR 339
N +AA+AM EG+ W A YD + GWV TVQAS CR+LL+T+S+ +RRHG GR RG + W + + + +A + S + W + +++ + L DLY W+SCGR
Sbjct: 801 NDAMAAEAMAEGVRWTAWGYDKTKRGWVKKTVQASPACRELLRTISEWEIGARRHGTGRPRGIVEWNVRLGR-----QAAAPSAQGWQETIGALLRRTGPGGLDLLDLYKAWFSCGR 912
BLAST of mRNA_Ecto-sp13_S_contig809.19431.1 vs. uniprot
Match: A0A6H5K4J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4J5_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 4.430e-13 Identity = 68/237 (28.69%), Postives = 99/237 (41.77%), Query Frame = 1
Query: 349 VQAFCGKPQCPRCWKYRNVGFREQRVRFSNNWTGAPSEVSGGSGTLRGGNVKIAKTDD---RQWM--AESGTDVEIYSNRDAMISNRPGPAGTCSLARVAFFAEHVGNPPLGVDTTGEKTLWVAVAEYVTAGIGQDKVIDAATRHPIMRRRKRL----SFFPAQAIRRVVHMYHVCVPNKCKA---------------VSDAGK---APVWRHDLS----------GENNRYIHNEH 948
+ A C + +CP CW+ + S G P++ S G +GG+VK A + R W A G DVEI++ A + G G +L ++ + + N G V V EYVT G+G+ K D AT+HP + S FP +AIRR VHMYH+C + + + D K A VW+H + G + Y+ NEH
Sbjct: 189 LSAVCSELRCPCCWEGGGGKLDNSNISCSRIKHGVPAKSSSGMCYSKGGDVKAATNEGANPRDWAVGAGGGQDVEIFTTPKAREDDLSG-GGDVTLGKILYLFDLNLNRRPGCSAPDPAMECVLVYEYVTRGVGRSKKEDLATKHPSYWLQGGAATTPSVFPVEAIRRHVHMYHLCPTSSFEGGRIDDTSESQSCGLRMDDMAKGSGAKVWKHHYNLATAPRDRRHGHRDAYLLNEH 424 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig809.19431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig809.19431.1 >prot_Ecto-sp13_S_contig809.19431.1 ID=prot_Ecto-sp13_S_contig809.19431.1|Name=mRNA_Ecto-sp13_S_contig809.19431.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=313bp MMEGLAWEARRYDNRDGWVVSTVQASSPCRKLLKTLSDTLSHSRRHGVGRback to top mRNA from alignment at Ecto-sp13_S_contig809:15243..18300+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig809.19431.1 ID=mRNA_Ecto-sp13_S_contig809.19431.1|Name=mRNA_Ecto-sp13_S_contig809.19431.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3058bp|location=Sequence derived from alignment at Ecto-sp13_S_contig809:15243..18300+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig809:15243..18300+ >mRNA_Ecto-sp13_S_contig809.19431.1 ID=mRNA_Ecto-sp13_S_contig809.19431.1|Name=mRNA_Ecto-sp13_S_contig809.19431.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=939bp|location=Sequence derived from alignment at Ecto-sp13_S_contig809:15243..18300+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |