mRNA_Ecto-sp13_S_contig8035.19362.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8035.19362.1
Unique NamemRNA_Ecto-sp13_S_contig8035.19362.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8035.19362.1 vs. uniprot
Match: A0A6H5L4N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4N3_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 9.400e-34
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:   64 EVYCVCRTADVTGTMLECDFCQDWFHVRCVGLTEQDCDRFSKYACPLCTKNKGKKSTLSK 243
            EVYCVCRTADVTGTMLECDFCQDWFHVRCVGLTEQDCDRFSKYACPLCTKNKGKKSTLSK
Sbjct:  395 EVYCVCRTADVTGTMLECDFCQDWFHVRCVGLTEQDCDRFSKYACPLCTKNKGKKSTLSK 454
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8035.19362.1 vs. uniprot
Match: D7FZH6_ECTSI (WD repeat domain-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH6_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 9.830e-34
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:   64 EVYCVCRTADVTGTMLECDFCQDWFHVRCVGLTEQDCDRFSKYACPLCTKNKGKKSTLSK 243
            EVYCVCRTADVTGTMLECDFCQDWFHVRCVGLTEQDCDRFSKYACPLCTKNKGKKSTLSK
Sbjct: 3384 EVYCVCRTADVTGTMLECDFCQDWFHVRCVGLTEQDCDRFSKYACPLCTKNKGKKSTLSK 3443
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8035.19362.1 vs. uniprot
Match: A0A427Y3J7_9TREE (Uncharacterized protein n=1 Tax=Saitozyma podzolica TaxID=1890683 RepID=A0A427Y3J7_9TREE)

HSP 1 Score: 73.9 bits (180), Expect = 1.280e-12
Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:   64 EVYCVCRTADVTGTMLECDFCQDWFHVRCVGLTEQDCDRFSKYACPLCTKNKGKKST 234
            EV+C+CR+++  G M+EC  C DWFH  CVGL E + +R  KY CP C +  G+KST
Sbjct:  110 EVWCICRSSEADGPMIECGECNDWFHFSCVGLEEDEAERIHKYICPNCEETTGEKST 166
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8035.19362.1 vs. uniprot
Match: A0A834REV4_SARSC (CXXC-type zinc finger protein 1 n=1 Tax=Sarcoptes scabiei TaxID=52283 RepID=A0A834REV4_SARSC)

HSP 1 Score: 65.5 bits (158), Expect = 1.060e-9
Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:   70 YCVCRTADVTGTMLECDFCQDWFHVRCVGLTEQDCDRFSKYACPLCTKN 216
            YCVCR + VTG M++CDFC +WFH  C+ +T+Q   +  ++ CPLCT +
Sbjct:   26 YCVCRKSHVTGFMIQCDFCFEWFHGPCIKVTKQSAAKIEQFLCPLCTSD 74
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8035.19362.1 vs. uniprot
Match: A0A177UBE9_9BASI (Transcription factor BYE1 n=2 Tax=Tilletia TaxID=13289 RepID=A0A177UBE9_9BASI)

HSP 1 Score: 65.5 bits (158), Expect = 1.160e-9
Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:   67 VYCVCRTADVTGTMLECDFCQDWFHVRCVGLTEQDCDRFSKYACPLCTKNKGKKSTLSK 243
            +YCVC+  D    M+EC  C+DWFH+RCVGL+++  DR   Y CP C++      T SK
Sbjct:  212 LYCVCKKKDDGSPMVECALCEDWFHLRCVGLSKRAVDRLESYTCPPCSEKIALAKTNSK 270
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8035.19362.1 vs. uniprot
Match: UPI0003F09002 (nucleosome-remodeling factor subunit BPTF-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F09002)

HSP 1 Score: 63.2 bits (152), Expect = 1.770e-9
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:   64 EVYCVCRTA-DVTGTMLECDFCQDWFHVRCVGLTEQDCDRFSKYACPLCTKNKGKKS 231
            E+YC+CR   D +   + CD CQDWFH RCVG+++ + D   KY CP C  +K +KS
Sbjct:   29 ELYCICRQPYDESQFYIGCDRCQDWFHGRCVGISQTEADNIEKYLCPNCQSSKVQKS 85
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8035.19362.1 vs. uniprot
Match: A0A177VBA2_9BASI (Transcription factor BYE1 n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VBA2_9BASI)

HSP 1 Score: 63.9 bits (154), Expect = 4.010e-9
Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:   67 VYCVCRTADVTGTMLECDFCQDWFHVRCVGLTEQDCDRFSKYACPLCTK 213
            +YC+C+  D    M+EC  C+DWFH+RCVGL+++  DR   Y CP C++
Sbjct:  207 LYCICKKKDDGSPMVECAACEDWFHLRCVGLSKRAVDRLESYTCPACSE 255
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8035.19362.1 vs. uniprot
Match: A0A4Q9N8L8_9APHY (PHD-type domain-containing protein n=1 Tax=Dichomitus squalens TaxID=114155 RepID=A0A4Q9N8L8_9APHY)

HSP 1 Score: 60.8 bits (146), Expect = 6.570e-9
Identity = 22/59 (37.29%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:   64 EVYCVCRTADVTGTMLECDFCQDWFHVRCVGLTEQDCDRFSKYACPLCTKNKGKKSTLS 240
            ++YC+C+  D    M+ C  C+DW+H RCV L+E D +    Y CP C +  G ++ +S
Sbjct:   50 KIYCLCKKPDDGSPMIHCSSCKDWYHFRCVELSETDAEEIQHYVCPSCHEKTGARTIIS 108
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8035.19362.1 vs. uniprot
Match: H2ZQ20_CIOSA (Uncharacterized protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2ZQ20_CIOSA)

HSP 1 Score: 61.2 bits (147), Expect = 1.050e-8
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:   64 EVYCVCRTA-DVTGTMLECDFCQDWFHVRCVGLTEQDCDRFSKYACPLC 207
            E+YC+CRT  D T   + CD CQDW+H RCVG+TE++      Y CP C
Sbjct:   37 ELYCLCRTPYDDTQFYIGCDACQDWYHGRCVGITEEESSNIDSYTCPRC 85
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8035.19362.1 vs. uniprot
Match: A0A8J4YB64_CHIOP (CXXC-type zinc finger protein 1 n=1 Tax=Chionoecetes opilio TaxID=41210 RepID=A0A8J4YB64_CHIOP)

HSP 1 Score: 62.0 bits (149), Expect = 1.720e-8
Identity = 23/48 (47.92%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:   64 EVYCVCRTADVTGTMLECDFCQDWFHVRCVGLTEQDCDRFSKYACPLC 207
            +VYCVCRTADVT  M+ CD C++W+H  C+ +TE + ++  K+ C  C
Sbjct:   11 QVYCVCRTADVTRFMIGCDKCEEWYHGDCINVTESEANKIRKFFCQKC 58
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8035.19362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4N3_9PHAE9.400e-34100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZH6_ECTSI9.830e-34100.00WD repeat domain-containing protein, putative n=1 ... [more]
A0A427Y3J7_9TREE1.280e-1250.88Uncharacterized protein n=1 Tax=Saitozyma podzolic... [more]
A0A834REV4_SARSC1.060e-948.98CXXC-type zinc finger protein 1 n=1 Tax=Sarcoptes ... [more]
A0A177UBE9_9BASI1.160e-945.76Transcription factor BYE1 n=2 Tax=Tilletia TaxID=1... [more]
UPI0003F090021.770e-947.37nucleosome-remodeling factor subunit BPTF-like n=1... [more]
A0A177VBA2_9BASI4.010e-946.94Transcription factor BYE1 n=2 Tax=Tilletia TaxID=1... [more]
A0A4Q9N8L8_9APHY6.570e-937.29PHD-type domain-containing protein n=1 Tax=Dichomi... [more]
H2ZQ20_CIOSA1.050e-851.02Uncharacterized protein n=1 Tax=Ciona savignyi Tax... [more]
A0A8J4YB64_CHIOP1.720e-847.92CXXC-type zinc finger protein 1 n=1 Tax=Chionoecet... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8035contigEcto-sp13_S_contig8035:2867..3286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score136.0
Seed ortholog evalue1.4e-29
Seed eggNOG ortholog2880.D7FZH6
Preferred nameCTF1
Model size421
KEGG koko:K11446,ko:K11797,ko:K11798
Hectar predicted targeting categoryother localisation
GOsGO:0001932,GO:0001934,GO:0003674,GO:0005102,GO:0005125,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006325,GO:0006355,GO:0006357,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007088,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007346,GO:0008104,GO:0008150,GO:0008284,GO:0008286,GO:0008360,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010469,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010799,GO:0010800,GO:0010941,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030545,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032868,GO:0032869,GO:0032870,GO:0033036,GO:0033043,GO:0033135,GO:0033138,GO:0033365,GO:0034097,GO:0034504,GO:0034613,GO:0038111,GO:0040008,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042393,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043567,GO:0043568,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045787,GO:0045840,GO:0045893,GO:0045931,GO:0045935,GO:0045937,GO:0045944,GO:0046907,GO:0048018,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0060255,GO:0060548,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070577,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090068,GO:0098760,GO:0098761,GO:0098772,GO:0140030,GO:0140033,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
Exons1
EggNOG free text desc.regulation of cell shape
EggNOG OGsCOG0553@1,COG2319@1,KOG0383@2759,KOG0644@2759,KOG1633@1,KOG1633@2759
Cds size420
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03036,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464076.641577-CDS-Ecto-sp13_S_contig8035:2866..32861681464076.641577-CDS-Ecto-sp13_S_contig8035:2866..3286Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8035 2867..3286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8035.19362.1prot_Ecto-sp13_S_contig8035.19362.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8035 2867..3286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8035.19362.1

>prot_Ecto-sp13_S_contig8035.19362.1 ID=prot_Ecto-sp13_S_contig8035.19362.1|Name=mRNA_Ecto-sp13_S_contig8035.19362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=140bp
APVAGGGAAAAAGGGGGGGGGEVYCVCRTADVTGTMLECDFCQDWFHVRC
VGLTEQDCDRFSKYACPLCTKNKGKKSTLSKKKRKVPPNNDPAAAVPPSS
LRAAGSGGDGAGARAAAGGEHGYAALPAQKNKPRAPGGDG
back to top

mRNA from alignment at Ecto-sp13_S_contig8035:2867..3286+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8035.19362.1 ID=mRNA_Ecto-sp13_S_contig8035.19362.1|Name=mRNA_Ecto-sp13_S_contig8035.19362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8035:2867..3286+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCCCGTTGCCGGTGGAGGGGCGGCGGCGGCCGCCGGAGGAGGAGGCGG
CGGCGGCGGCGGCGAGGTGTACTGCGTGTGCCGTACGGCGGACGTGACGG
GGACCATGCTGGAGTGTGACTTCTGCCAGGATTGGTTCCACGTGCGGTGC
GTGGGGCTGACCGAGCAGGACTGCGACCGCTTCTCCAAGTACGCGTGCCC
GCTCTGCACCAAGAACAAGGGCAAGAAGTCCACCCTCAGCAAGAAGAAGA
GGAAGGTCCCACCCAACAACGACCCAGCGGCAGCCGTCCCTCCTTCCTCG
TTACGGGCGGCGGGTTCTGGTGGTGACGGTGCCGGCGCACGGGCGGCCGC
AGGCGGCGAGCACGGGTACGCAGCCTTGCCGGCCCAGAAGAACAAGCCGC
GGGCGCCTGGCGGCGACGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8035:2867..3286+

>mRNA_Ecto-sp13_S_contig8035.19362.1 ID=mRNA_Ecto-sp13_S_contig8035.19362.1|Name=mRNA_Ecto-sp13_S_contig8035.19362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8035:2867..3286+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCCCGTTGCCGGTGGAGGGGCGGCGGCGGCCGCCGGAGGAGGAGGCGG
CGGCGGCGGCGGCGAGGTGTACTGCGTGTGCCGTACGGCGGACGTGACGG
GGACCATGCTGGAGTGTGACTTCTGCCAGGATTGGTTCCACGTGCGGTGC
GTGGGGCTGACCGAGCAGGACTGCGACCGCTTCTCCAAGTACGCGTGCCC
GCTCTGCACCAAGAACAAGGGCAAGAAGTCCACCCTCAGCAAGAAGAAGA
GGAAGGTCCCACCCAACAACGACCCAGCGGCAGCCGTCCCTCCTTCCTCG
TTACGGGCGGCGGGTTCTGGTGGTGACGGTGCCGGCGCACGGGCGGCCGC
AGGCGGCGAGCACGGGTACGCAGCCTTGCCGGCCCAGAAGAACAAGCCGC
GGGCGCCTGGCGGCGACGGG
back to top