mRNA_Ecto-sp13_S_contig803.19355.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig803.19355.1
Unique NamemRNA_Ecto-sp13_S_contig803.19355.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig803.19355.1 vs. uniprot
Match: D8LJV4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJV4_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 1.570e-59
Identity = 88/90 (97.78%), Postives = 90/90 (100.00%), Query Frame = 1 
Query:    1 GGYRRPHVGRGPRGTVEEEDDADWGDPLDSMGDDDGMGMLHAHGRGVYMGSSQRPAEMTSDGPYDDEEEGDDLPVALWKQQRRGHGTLNQ 270
            GGYRRPHVGRGPRGTVEEEDDADWG+PLDSMGDDDGMGMLHAHGRGVYMGSSQRPAEMTSDGPYDDEEEGDDLPVALW+QQRRGHGTLNQ
Sbjct:  163 GGYRRPHVGRGPRGTVEEEDDADWGEPLDSMGDDDGMGMLHAHGRGVYMGSSQRPAEMTSDGPYDDEEEGDDLPVALWRQQRRGHGTLNQ 252
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig803.19355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJV4_ECTSI1.570e-5997.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig803contigEcto-sp13_S_contig803:767..3030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size312
Hectar predicted targeting categoryother localisation
Exons3
Cds size183
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464076.0942485-UTR-Ecto-sp13_S_contig803:766..8231681464076.0942485-UTR-Ecto-sp13_S_contig803:766..823Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig803 767..823 +
1681464076.106127-UTR-Ecto-sp13_S_contig803:1721..17541681464076.106127-UTR-Ecto-sp13_S_contig803:1721..1754Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig803 1722..1754 +
1681464076.1388023-UTR-Ecto-sp13_S_contig803:2991..30301681464076.1388023-UTR-Ecto-sp13_S_contig803:2991..3030Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig803 2992..3030 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464076.1174717-CDS-Ecto-sp13_S_contig803:1754..18381681464076.1174717-CDS-Ecto-sp13_S_contig803:1754..1838Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig803 1755..1838 +
1681464076.1282864-CDS-Ecto-sp13_S_contig803:2892..29911681464076.1282864-CDS-Ecto-sp13_S_contig803:2892..2991Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig803 2893..2991 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig803.19355.1prot_Ecto-sp13_S_contig803.19355.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig803 1755..2991 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig803.19355.1

>prot_Ecto-sp13_S_contig803.19355.1 ID=prot_Ecto-sp13_S_contig803.19355.1|Name=mRNA_Ecto-sp13_S_contig803.19355.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
MGDDDGMGMLHAHGRGVYMGSSQRPAEMTSDGPYDDEEEGDDLPVALWKQ
QRRGHGTLNQ*
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mRNA from alignment at Ecto-sp13_S_contig803:767..3030+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig803.19355.1 ID=mRNA_Ecto-sp13_S_contig803.19355.1|Name=mRNA_Ecto-sp13_S_contig803.19355.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig803:767..3030+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGGGTACAGGCGGCCGCACGTGGGGCGAGGTCCGCGAGGAACGGTGGA
GGAAGAGGTGAGAAAAGTTGTTACGACGCCCACCAATGGTGTTAAGACAT
TTGAGCGTTTTTAACGGTGCCCTCTTTTGATCTCGGACGGGATTGCTGCG
AAGAAGTTTGGACGAACGGTCCAGAGCGTCAAGGGGATTAGACACGTTAC
GGCCATATTTGTCGTGATATAACGCTCACCGCCTTGTGCTTGAGAAGCAG
AAGACGGTTGTAGGAGATTCATGAAGTTAGGAGTATTTTCCCTCCCCGTA
GTGTTATCGGAGTTGTCGCCTCCCTGTGTTGTCACTCGCCGTTCTCTGCT
CTCAAGCGTAACAGTAGTCACGGTGTAAGAGCTACGTTGCCTCACGACGG
TGGCCTGTTTATTCGACGTGCTCTCGCGAACCGTTCAACCCGGGAACCAG
TGTACAGCTCTAGTACTGTTATGTTGTGGCATAGTATCGCCCCCCGGGGG
CGTGGGCAACGGAGCGTGTCAAGTTAAGATCCGCTAAACGCAGCTATCCC
TGCACCCTCATCACGCTCTGCGTGGTGACAGTTCATCATGCCCTGCGTGG
TGACAGTGTTGATGCGGTTAGGGTTAGGGTCAGTTGGCACGTTTCGCTCT
TGCGGACCATCAGTGTTCGCCGAGCTGCGTTGGCGTCCATGGTAGTTCCA
CCCGATAGGCCTCGCCAGCACGTTCGGCTCGCACTTTTTAGTGCATGAAA
TGCTGCTGCTGTCTTCGTCTCGTTTGCCGCGGGTGCACGGCTTCGTGTCC
TTGCAAGCACGGCTACTGCAGTAAGCGGGTCTGGCATGCTTCACGGCCGT
GCTTGCGTACCATACCACAAATGCCTCTGCCGACCCCCCCCCCCTCCCGG
TTCCTTTCCCGCCGTCTTTTCATGATGTCGTGTCGTGTCGTGTCGTGCTT
ACCAGGACGACGCGGACTGGGGGGATCCGCTCGATTCGATGGGGGATGAC
GATGGGATGGGGATGTTGCACGCCCACGGGCGAGGTGTCTACATGGGGAG
TTCTCAGAGACCCGCAGAGATGGTGAGCAAGCGGACCTTGTCGTTGTATG
ATGTTGTCCCGCCGGCCTCTGTGGAACGCAGAGCGGTTGCTGTTGTCATT
GTTTTCACCTTTTAAACTCTCACCACAATGATCACGCAGTTGTTGCTGTT
GCTGGTAATAATGTCCTCACGCCAATAAATCAAGGCTATTCCTTCTCGGT
ACCTCCAAGTATCCGTCCCGGTGACGCGTTCCGTGGTTGCAGGCCAACTA
TCCCAGAAGGGGTGCACACGATTAAAATCAAAACGGACACAAACACAGAC
TCGGAAATATCCTCCAACGCGATAGCAAATCACAAGTGGTGCGCGGCGAT
CAACGCCGTGTCGTTATTTACGTCACAATCCCAATCCCCGCTTTTGTGGT
GGACGCGTCTGGTCATGGTGGACATATTGTATGTTTGGGCGTGCATGCAT
GCATCCGCGTAGAACAAGCACGTGTGTAGAAATATGTTCTTGGCATCTTA
GAGTTCATGTTTTCAAGCCTTAAACGATCGTGGCCCTCGGAATGAATCAG
CGTGCTAAGGCCGGCAGGACAAACTGACGGAATAGTTTAATGGGTAACCA
TAGGGTGTACTCATAGTCGCGCATGCCGAGGTCGTTAGACCATTAATCTC
GCATCCCTACAAGCCGGGACTGAATCTGGTGGGACAGGTGATATCATGTT
TGTGCTGTTGCATGCTGCATGGCGAAAGGTCCTGTTAAGAGACAGCTCGG
CTCTGGACTAATGTAGAGTGAGACAGCCTTTTGCGCGCATACCAAGGGTG
CTTGCTACACGTCACTTTCCCTCCCCCTTCCCACTTGCAACCCTCGTGCT
GCTCTTCCTGATCGCTTGTTTCGCAACAAGCTGATCAGTAGTTTGCTCAC
AAAATAGAATCTCGCAGGACGAGTAACTGCTGTGTTCTGCACCCGTCTTT
CTGTCCACCCGCCGCAGTTCCTTTGGTGGCGACACAACAGGGGTAGCAAC
AGCACGAGCAGCAGCAGCAGAAGCAGTAGTTGACCCGTACCCCACTCCTT
CGTTTGTTTCTTTTTTCTCTTGCCAGACTTCAGACGGGCCGTATGACGAC
GAGGAGGAGGGGGACGATCTTCCTGTGGCGCTTTGGAAGCAGCAGAGGCG
AGGGCACGGCACCCTCAATCAATGAAGAAACTTGATGTCTTAGCTGTTTT
ACGGGAAGAGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig803:767..3030+

>mRNA_Ecto-sp13_S_contig803.19355.1 ID=mRNA_Ecto-sp13_S_contig803.19355.1|Name=mRNA_Ecto-sp13_S_contig803.19355.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig803:767..3030+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGGATGACGATGGGATGGGGATGTTGCACGCCCACGGGCGAGGTGT
CTACATGGGGAGTTCTCAGAGACCCGCAGAGATGACTTCAGACGGGCCGT
ATGACGACGAGGAGGAGGGGGACGATCTTCCTGTGGCGCTTTGGAAGCAG
CAGAGGCGAGGGCACGGCACCCTCAATCAATGA
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