mRNA_Ecto-sp13_S_contig80299.19354.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig80299.19354.1
Unique NamemRNA_Ecto-sp13_S_contig80299.19354.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig80299.19354.1 vs. uniprot
Match: D7G7K1_ECTSI (Rit1_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K1_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 2.140e-27
Identity = 45/48 (93.75%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    4 QFVAGLVEAYRQSGAAYPVFANLRNGLWYGKEWDGTCYFKSTDGHSRR 147
            QFV+GLVEAYR+SGAAYPVFANLRNGLWYGK+WDGTCYFKSTDGHSRR
Sbjct:   11 QFVSGLVEAYRRSGAAYPVFANLRNGLWYGKDWDGTCYFKSTDGHSRR 58
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BLAST of mRNA_Ecto-sp13_S_contig80299.19354.1 vs. uniprot
Match: A0A151ZJA8_9MYCE (Putative initiator tRNA phosphoribosyl-transferase n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZJA8_9MYCE)

HSP 1 Score: 62.4 bits (150), Expect = 4.550e-10
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 SQFVAGLVEAYRQSGAAYPVFANLRNGLWYGKEWDGTCYFKSTDGH 138
            S+F+  L+E Y++     PV ANLR G WY  +WDGTCYFKSTDGH
Sbjct:   11 SKFIKELIEIYKE----LPVIANLRCGYWYFDKWDGTCYFKSTDGH 52
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BLAST of mRNA_Ecto-sp13_S_contig80299.19354.1 vs. uniprot
Match: A0A7S4E179_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4E179_9EUKA)

HSP 1 Score: 56.2 bits (134), Expect = 5.450e-9
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:   22 VEAYRQSGAAYPVFANLRNGLWYGKEWDGTCYFKSTDGHS 141
            VE  ++    +PVFANLRNGLWY      TCYFKSTDGH+
Sbjct:   39 VELLQRRHPGFPVFANLRNGLWYVSPGTPTCYFKSTDGHA 78
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BLAST of mRNA_Ecto-sp13_S_contig80299.19354.1 vs. uniprot
Match: A0A835YSK0_9STRA (Initiator tRNA phosphoribosyl transferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSK0_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 8.100e-9
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:    1 SQFVAGLVEAYRQSGA--AYPVFANLRNGLWYG--KEWDGTCYFKSTDGH 138
            S ++   ++A R      A+P FANLRNG WYG    W+GTCYFKS DGH
Sbjct:   65 SHYITSALQAIRSRPGCTAFPAFANLRNGQWYGPPSAWEGTCYFKSADGH 114
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BLAST of mRNA_Ecto-sp13_S_contig80299.19354.1 vs. uniprot
Match: A0A388K2T9_CHABU (Ig-like domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K2T9_CHABU)

HSP 1 Score: 57.0 bits (136), Expect = 3.640e-8
Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 SQFVAGLVEAYRQSGAAYPVFANLRNGLWYGKEWDGTCYFKSTDGH 138
            S FV  + + Y    ++ P+ ANLR GLWY + +DGTCYFKSTDGH
Sbjct:   85 SMFVDEIAQRY----SSLPLLANLRCGLWYSRRFDGTCYFKSTDGH 126
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BLAST of mRNA_Ecto-sp13_S_contig80299.19354.1 vs. uniprot
Match: A0A8J4LTB7_9CHLO (Rit1_C domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4LTB7_9CHLO)

HSP 1 Score: 56.2 bits (134), Expect = 6.820e-8
Identity = 25/43 (58.14%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:   13 AGLVEAYRQSGAAYPVFANLRNGLWYGKEWDGTCYFKSTDGHS 141
            A  V   R    A P+ ANLR GLWY ++ DGTCYFKSTDGH+
Sbjct:   41 AAFVSEVRALYPALPLLANLRCGLWYTRQADGTCYFKSTDGHN 83
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BLAST of mRNA_Ecto-sp13_S_contig80299.19354.1 vs. uniprot
Match: A0A8J4CP68_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CP68_9CHLO)

HSP 1 Score: 56.2 bits (134), Expect = 6.830e-8
Identity = 25/43 (58.14%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:   13 AGLVEAYRQSGAAYPVFANLRNGLWYGKEWDGTCYFKSTDGHS 141
            A  V   R    A P+ ANLR GLWY ++ DGTCYFKSTDGH+
Sbjct:   41 AAFVSEVRALYPALPLLANLRCGLWYTRQADGTCYFKSTDGHN 83
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BLAST of mRNA_Ecto-sp13_S_contig80299.19354.1 vs. uniprot
Match: A0A7S3XDB8_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3XDB8_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 9.290e-8
Identity = 25/40 (62.50%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:   22 VEAYRQSGAAYPVFANLRNGLWYGKEWDGTCYFKSTDGHS 141
            VE  RQ     PV ANLR GLWY  + +GTCYFKSTDGH+
Sbjct:   41 VEEVRQWYKGIPVLANLRCGLWYAPKPEGTCYFKSTDGHN 80
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BLAST of mRNA_Ecto-sp13_S_contig80299.19354.1 vs. uniprot
Match: A0A2R6XUT9_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XUT9_MARPO)

HSP 1 Score: 55.8 bits (133), Expect = 9.300e-8
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 SQFVAGLVEAYRQSGAAYPVFANLRNGLWYGKEWDGTCYFKSTDGHS 141
            S FV+ +   +R+     P+ ANLR GLWY  ++DGTCYFKSTDGH+
Sbjct:   38 SLFVSEIRHLWRE----LPLLANLRCGLWYSSDFDGTCYFKSTDGHN 80
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BLAST of mRNA_Ecto-sp13_S_contig80299.19354.1 vs. uniprot
Match: A8HVT9_CHLRE (Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8HVT9_CHLRE)

HSP 1 Score: 55.1 bits (131), Expect = 1.640e-7
Identity = 24/43 (55.81%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:   13 AGLVEAYRQSGAAYPVFANLRNGLWYGKEWDGTCYFKSTDGHS 141
            A  V   R      P+ ANLR GLWY ++ DGTCYFKSTDGH+
Sbjct:   30 AAFVSEIRALYPTLPLLANLRCGLWYARQPDGTCYFKSTDGHN 72
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig80299.19354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7K1_ECTSI2.140e-2793.75Rit1_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A151ZJA8_9MYCE4.550e-1058.70Putative initiator tRNA phosphoribosyl-transferase... [more]
A0A7S4E179_9EUKA5.450e-960.00Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A835YSK0_9STRA8.100e-952.00Initiator tRNA phosphoribosyl transferase-domain-c... [more]
A0A388K2T9_CHABU3.640e-854.35Ig-like domain-containing protein n=1 Tax=Chara br... [more]
A0A8J4LTB7_9CHLO6.820e-858.14Rit1_C domain-containing protein n=2 Tax=Volvox re... [more]
A0A8J4CP68_9CHLO6.830e-858.14Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A7S3XDB8_9CHLO9.290e-862.50Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
A0A2R6XUT9_MARPO9.300e-853.19Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A8HVT9_CHLRE1.640e-755.81Predicted protein (Fragment) n=1 Tax=Chlamydomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig80299contigEcto-sp13_S_contig80299:50..199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score105.9
Seed ortholog evalue5.5e-21
Seed eggNOG ortholog2880.D7G7K1
Preferred nameRIT1
Model size150
KEGG koko:K15463
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016757,GO:0016763,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0043170,GO:0043399,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564
Exons1
EggNOG free text desc.tRNA A64-2'-O-ribosylphosphate transferase activity
EggNOG OGsKOG2634@1,KOG2634@2759
Cds size150
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464076.0608535-CDS-Ecto-sp13_S_contig80299:49..1991681464076.0608535-CDS-Ecto-sp13_S_contig80299:49..199Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig80299 50..199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig80299.19354.1prot_Ecto-sp13_S_contig80299.19354.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig80299 50..199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig80299.19354.1

>prot_Ecto-sp13_S_contig80299.19354.1 ID=prot_Ecto-sp13_S_contig80299.19354.1|Name=mRNA_Ecto-sp13_S_contig80299.19354.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
SQFVAGLVEAYRQSGAAYPVFANLRNGLWYGKEWDGTCYFKSTDGHSRR*
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mRNA from alignment at Ecto-sp13_S_contig80299:50..199-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig80299.19354.1 ID=mRNA_Ecto-sp13_S_contig80299.19354.1|Name=mRNA_Ecto-sp13_S_contig80299.19354.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80299:50..199- (Ectocarpus species13 EcNAP12_S_4_19m)
TCACAGTTTGTGGCGGGATTGGTCGAAGCCTACCGTCAGTCGGGGGCAGC
CTACCCGGTCTTCGCCAACCTCCGGAACGGCCTGTGGTATGGTAAGGAAT
GGGATGGGACGTGCTACTTTAAGTCCACGGACGGGCACAGCCGAAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig80299:50..199-

>mRNA_Ecto-sp13_S_contig80299.19354.1 ID=mRNA_Ecto-sp13_S_contig80299.19354.1|Name=mRNA_Ecto-sp13_S_contig80299.19354.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80299:50..199- (Ectocarpus species13 EcNAP12_S_4_19m)
TCACAGTTTGTGGCGGGATTGGTCGAAGCCTACCGTCAGTCGGGGGCAGC
CTACCCGGTCTTCGCCAACCTCCGGAACGGCCTGTGGTATGGTAAGGAAT
GGGATGGGACGTGCTACTTTAAGTCCACGGACGGGCACAGCCGAAGGTAA
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