mRNA_Ecto-sp13_S_contig10168.194.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10168.194.1
Unique NamemRNA_Ecto-sp13_S_contig10168.194.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10168.194.1 vs. uniprot
Match: D7FTE2_ECTSI (L-type lectin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTE2_ECTSI)

HSP 1 Score: 521 bits (1342), Expect = 3.890e-184
Identity = 256/268 (95.52%), Postives = 264/268 (98.51%), Query Frame = 1
Query:    1 MAQQRMRRKQPRPGRRVGMVQAVVAVVVGLACCAVRVSGELKQQLSVLGPFDKHDHKGARIIPYFEKTGATNIMQSFVRLTPDKPEELGTLWSRSTIATSDFSLEWKFRISGAEKVKYGDTIALVIAPMKYKAGQEGRFFGIDEKFTGLVIVANTNRQLLNKDKLPGEPMGRHRDVSVIANNGTRNFGNLIDSLEGCTANVRFDETRDDFNVMQSTRVRLKVEGNTVAMEVDARNTGRWRRCSTMAHLDMPADWASKSNVGIIAKTSE 804
            MAQQ+MRRKQPRPGRRVG+VQ VVAV VGLACCAVRVSGELKQQLSVLGPFDKHDHKGARIIPYFEKTGATNIMQSFVRLTPDKP+ELGTLWSRSTIATSDFSLEWKFRISG EKVKYGDTIALVIAPMKYKAGQ+GRFFGIDEKFTGLV+VANTNRQLLN+DKLPGEPMGRHRDVSVIANNGTRN+GNLIDSLEGCTANVRFDETRDDFNVMQSTRVRLKVEGNTVAMEVDARN GRWRRCST+AHLDMPADWASKSNVGIIAKTSE
Sbjct:    1 MAQQQMRRKQPRPGRRVGLVQVVVAVAVGLACCAVRVSGELKQQLSVLGPFDKHDHKGARIIPYFEKTGATNIMQSFVRLTPDKPQELGTLWSRSTIATSDFSLEWKFRISGTEKVKYGDTIALVIAPMKYKAGQDGRFFGIDEKFTGLVVVANTNRQLLNRDKLPGEPMGRHRDVSVIANNGTRNYGNLIDSLEGCTANVRFDETRDDFNVMQSTRVRLKVEGNTVAMEVDARNAGRWRRCSTIAHLDMPADWASKSNVGIIAKTSE 268          
BLAST of mRNA_Ecto-sp13_S_contig10168.194.1 vs. uniprot
Match: A0A835YN92_9STRA (Concanavalin A-like lectin/glucanase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN92_9STRA)

HSP 1 Score: 186 bits (471), Expect = 2.490e-52
Identity = 98/221 (44.34%), Postives = 131/221 (59.28%), Query Frame = 1
Query:  130 QLSVLGPFDKHDHKGARIIPYFEKTGATNIMQSFVRLTPDKPEELGTLWSRSTIATSDFSLEWKFRISGAEKVKYGDTIALVIAPMKYKAGQEGRFFGIDEKFTGLVIVANTNRQLLNKDKLPGEPMGRHRDVSVIANNGTRNFGNLIDSLEGCTANVRFDETRDDFNVMQSTRVRLKVEGNTVAMEVDARNTGRWRRCSTMAHLDMPADWASKSNVGIIA 792
            + S   PF+ HD  G R +P +   G     QSFVRLTPD P   G LWS+  + T  FSLEWKFRISG ++   G+ + L I        +EG  FG+D  FTG+ IV +T R          E   RHRDVSV+ ++G R    +  +L GC ANVR+ E RDDFNV+++TR+R  V  N   +++DARNTGRWRRC TM  +D+P  WA ++  G++A
Sbjct:   79 EASFTSPFNSHDESGQRFVPNWLHGGDALTKQSFVRLTPDTPFASGYLWSKKPLGTDVFSLEWKFRISGLQETGAGEHLGLWITDQARP--REGDVFGMDAAFTGIGIVVDTKRN---------EGDNRHRDVSVVMSDGRRTREQIQSNLVGCNANVRYWEGRDDFNVLRATRIR--VNENLFTLDIDARNTGRWRRCVTMNTVDLPRGWAERATAGLLA 286          
BLAST of mRNA_Ecto-sp13_S_contig10168.194.1 vs. uniprot
Match: A0A835YWL8_9STRA (Legume-like lectin family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWL8_9STRA)

HSP 1 Score: 183 bits (465), Expect = 4.720e-52
Identity = 101/237 (42.62%), Postives = 149/237 (62.87%), Query Frame = 1
Query:  109 VSGELKQQLSVLGPFDKHDHKGARIIPYFEKTGATNIMQSFVRLTPDKPEELGTLWSRSTIATSDFSLEWKFRISGAEKVKYGDTIALVIAPMKYKAGQEGRFFGIDEKFTGLVIVANTNRQLLNKDKLPGEPMG-RHRDVSVIANNGTRNFGNLIDSLEGCTANVRFDETRDDFNVMQSTRVRLKVEGNTVAMEVDA--RNTGRWRRCST--MAHLDMPAD-WASKSNVGIIAKTS 801
            VS  +  +LS   PF  HDH+G R +P++E +G   + QSF+R+TPDKP +LG +WSR+T+ + DFS+ WKFRISG +   +GD +AL I      A  EG  +     FTG+++V +TN         P +  G  H DVS++ N+G+R   + + +LEGC A +RF E RDDFNV++++R+R+K    T  +EVD   RNTGRWRRC+T  +A   +PA  W   ++VG++A T+
Sbjct:    4 VSANVIDKLSFQAPFLAHDHRGMRFVPHWEISGDAIVKQSFLRVTPDKPHQLGHVWSRTTLDSDDFSVIWKFRISGRQSETFGDFLALSITTAPRYA--EGDAYRQKADFTGVMVVVDTN---------PNDKAGANHFDVSIVYNDGSR--ADAVQNLEGCIAPLRFHEGRDDFNVLKASRLRIKYTAATRMLEVDMDPRNTGRWRRCATANLAKRGLPAGGWPRTAHVGLVAATT 227          
BLAST of mRNA_Ecto-sp13_S_contig10168.194.1 vs. uniprot
Match: A0A7S2B8C4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B8C4_9STRA)

HSP 1 Score: 151 bits (382), Expect = 2.020e-39
Identity = 89/258 (34.50%), Postives = 141/258 (54.65%), Query Frame = 1
Query:   34 RPGRRVGMVQAVVAVVVGLACCAVRVSGELKQQLSVLGPFDKHDHKGARIIPY-FEKTGATNIMQSFVRLTPDKPEELGTLWSRSTIATSDFSLEWKFRISGAEKVKYGDTIALVIAPMKYKAGQEGRFFGIDEKFTGLVIVANTNRQLLNKDKLPGEPMGRHRDVSVIANNGTRNFGNLIDSLEGCTANVRFDETRDDFNVMQSTRVRLKVEGNTVAMEVDARNTGRWRRCSTMAHLDMPADWASKSNVGIIAKTSE 804
            R GR + M + V A    L   A   + +L+Q  S   P+   D  G R++   ++  G  ++ QSFVRLTPD+  + G +WSR ++ T  FS   KFRISG  K  +GD +AL +    Y    EG   G  E+FTG  ++ +T +          E + RHRDVSVI N+G  +   ++D LEGC A++R+ E R DF+V   +R ++ V G  + +++D +N G+++ C+ +  L    DWA  +++G+ A T +
Sbjct:   14 RGGRELTMFRVVAATAAFLLALASTSADKLEQH-SFEPPYTDVDPSGNRLLSKDWKNGGVASVSQSFVRLTPDRQSKKGAVWSRKSLGTDTFSTILKFRISGQGKKFFGDGMALWVMQQAYFV--EGDLHGSVERFTGFGVIFDTFKNT--------ESLSRHRDVSVIVNDGESSTELMMDKLEGCDASIRYHEDRADFSVESMSRAKVIVTGKRLVVQIDGKNDGQFKDCAVV-DLPFAMDWAKSAHIGVTASTGQ 259          
BLAST of mRNA_Ecto-sp13_S_contig10168.194.1 vs. uniprot
Match: A0A1V9ZF38_9STRA (Lectin n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZF38_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.320e-32
Identity = 84/220 (38.18%), Postives = 116/220 (52.73%), Query Frame = 1
Query:  148 PFDKHDHKGARII-PYFEKTGATNIMQSFVRLTPDKPEELGTLWSRSTIATSDFSLEWKFRISGAEKVKYGDTIALVIAPMKYKAGQEGRFFGIDEKFTGLVIVANTNRQLLNKDKLPGEPMGRHRDVSVIANNGTRNFGNLIDSLE-GCTANVRFDETRDDFN-VMQSTRVRLKVEGNTVAMEVDARNTGRWRRCSTMAHLDMPADWASKSNVGIIAKT 798
            PFDK D++G R+I   +   G T +++SFVRLTPD+    G +WSR  +    FS   +FRISG  K  +GD I L +    Y  GQ     G+D  FTG+ IV +T    +N      E  G H+DV+V  N+GT+    L D  + GC    R+ E  DDF+ V  S+R+RL VE N + +EVD ++   W  C     L   A+W   + VGI   T
Sbjct:   27 PFDKVDYQGVRVINDTWSIGGTTEVLKSFVRLTPDRQNRNGYVWSREVLGRESFSAILQFRISGTGKKWFGDGIGLWLMTSPYVRGQN---HGVDPAFTGVGIVIDT---FVNS-----EHKGGHKDVTVQINDGTKTLETLQDEAKIGCDGAFRYHEDSDDFDAVYSSSRLRLVVERNNLKIEVDPKSKAEWVACYE-GTLPFAANWLESARVGITGST 234          
BLAST of mRNA_Ecto-sp13_S_contig10168.194.1 vs. uniprot
Match: A0A067C8K8_SAPPC (L-type lectin-like domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C8K8_SAPPC)

HSP 1 Score: 129 bits (325), Expect = 1.900e-31
Identity = 82/247 (33.20%), Postives = 123/247 (49.80%), Query Frame = 1
Query:   67 VVAVVVGLACCAVRVSGELKQQLSVLGPFDKHDHKGARIIPYFEKTGAT-NIMQSFVRLTPDKPEELGTLWSRSTIATSDFSLEWKFRISGAEKVKYGDTIALVIAPMKYKAGQEGRFFGIDEKFTGLVIVANTNRQLLNKDKLPGEPMGRHRDVSVIANNGTRNFGNLIDSLE-GCTANVRFDETRDDFNVMQS-TRVRLKVEGNTVAMEVDARNTGRWRRCSTMAHLDMPADWASKSNVGIIAKT 798
            +V ++V LA C     G   Q  S   P+ K D++G R+I     TG T  +M+SFVRLTPD+    G +WS+  +    FS   +FRISG  K  +GD I L +    Y  G      GID  F G+ IV +T    +N      E  G H+DV++  N+GT+    L D  + GC    R+ E  D+F+ + S +R+R  +E N + +E+D ++   W  C     L   A+W   + +G+   T
Sbjct:    1 MVRLLVLLAACVGLAQGAALQSHSFRPPYTKVDYQGVRVINDTWTTGGTAEVMKSFVRLTPDRQNRNGHVWSQDALGRDSFSAVMQFRISGTGKKWFGDGIGLWLTSSPYVRGSN---HGIDAAFNGVGIVIDT---FVNP-----EHKGGHKDVTIQINDGTKTLSTLQDETKIGCDGAFRYHEDSDEFDAVYSASRLRFTIERNNIKVEIDPKSKAEWTACYE-GQLPFAANWLETARIGLTGST 235          
BLAST of mRNA_Ecto-sp13_S_contig10168.194.1 vs. uniprot
Match: A0A1W0A9K6_9STRA (Lectin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9K6_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.890e-30
Identity = 80/240 (33.33%), Postives = 122/240 (50.83%), Query Frame = 1
Query:   88 LACCAVRVSGELKQQLSVLGPFDKHDHKGARII-PYFEKTGATNIMQSFVRLTPDKPEELGTLWSRSTIATSDFSLEWKFRISGAEKVKYGDTIALVIAPMKYKAGQEGRFFGIDEKFTGLVIVANTNRQLLNKDKLPGEPMGRHRDVSVIANNGTRNFGNLIDSLE-GCTANVRFDETRDDFN-VMQSTRVRLKVEGNTVAMEVDARNTGRWRRCSTMAHLDMPADWASKSNVGIIAKT 798
            LA  A  V+    +  S   PF K D++G RII   + + G   I+++FVRLTPD+    G +WSR  +    FS   +FRISG  +  +GD I L + P  +  G      GID  + G+ I+ +T    +N      E  G H+DV++  N+GT+N   L D  + GC    R+ E  D F+ V  ++R+R+ +E N + +E+D ++   W  C     L  PADW   + +GI   T
Sbjct:    7 LAVAAWTVAAAPLESHSFQPPFTKVDYQGQRIINETWAQGGTVEILKNFVRLTPDRQNRNGYVWSREALRRDTFSAVMQFRISGQGQKWFGDGIGLWVTPTPHSKGPN---HGIDPAYYGVGIIIDT---FVNS-----EHKGGHKDVTLQINDGTKNLDTLNDETKIGCDGAFRYHENSDGFDPVYSASRLRVVIERNNIKIEIDPKSQAEWSSCYE-GQLPFPADWLENARIGITGST 234          
BLAST of mRNA_Ecto-sp13_S_contig10168.194.1 vs. uniprot
Match: A0A813CUN2_9DINO (LMAN2L protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CUN2_9DINO)

HSP 1 Score: 126 bits (317), Expect = 4.000e-30
Identity = 86/255 (33.73%), Postives = 135/255 (52.94%), Query Frame = 1
Query:   88 LACCAVRVSGE-LKQQLSVLGPFDKHDHKGARIIPYFEKTGATNIMQSFVRLTPDKPEELGTLWSRSTIATSDFSLEWKFRISGAEKVKYGDTIAL-VIAPMKYKAGQEGRFFGIDEKFTGLVIVANTNRQLLNKDKLPGEPMGRHRDVSVIANNGTRNFGNLIDS----------LEGCTANVRFDETRDDFNVMQS-TRVRLKVEGNTVAMEVDARNTGRWRRCSTMAHLDMPA---DWASKSNVGIIAKTSE 804
            LA CAV  +G+ + + LS   P  + D  G R++P + K G    M++FVRLTPD+ ++ G+LWSR+ +    ++ E KFRISGA +  +GD +AL      +++ G   R  G +E FTG  +V +T    +N      E   RH+DVS+I       FG+  +S          + GC  + R+ E RDDF   +    VRL  E N+V++ +DAR TG ++ C +   L       +W S +++G+ A T +
Sbjct:    8 LALCAVSAAGQDIIEDLSFAAPLSEFDVDGTRLVPGYRKGGHAEAMKTFVRLTPDRADKAGSLWSRAALNKEVWTAELKFRISGAGRTLFGDGLALWYTTDTQFRPG---RLHGHNEFFTGFGVVLDT---FVNT-----ENAARHKDVSLI-------FGDSKNSPLAPPSDAPPVPGCDGDFRYSEARDDFAPAERFAAVRLVKERNSVSVFLDARGTGDFKSCISSLMLPQHLRGNEWWSMAHIGVSASTGQ 244          
BLAST of mRNA_Ecto-sp13_S_contig10168.194.1 vs. uniprot
Match: A0A8K1CDM0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDM0_PYTOL)

HSP 1 Score: 122 bits (305), Expect = 1.510e-28
Identity = 80/252 (31.75%), Postives = 130/252 (51.59%), Query Frame = 1
Query:   55 MVQAVVAVV-VGLACCAVRVSGELKQQLSVLGPFDKHDHKGARII-PYFEKTGATNIMQSFVRLTPDKPEELGTLWSRSTIATSDFSLEWKFRISGAEKVKYGDTIALVIAPMKYKAGQEGRFFGIDEKFTGLVIVANTNRQLLNKDKLPGEPMGRHRDVSVIANNGTRNFGNLIDSLE-GCTANVRFDETRDDFNVMQS-TRVRLKVEGNTVAMEVDARNTGRWRRCSTMAHLDMPADWASKSNVGIIAKT 798
            M++++ A++ V +A CA  V      +LS   PF++ D  G RI+   +   G+    ++F+RLT D+  + G LW R  +    F+    FRISG  K  +GD I L      +++  +G   G  ++FTG+ +V +T            E  G H+DVS+  N+G+++   + D    GC A VR+ E    F+ + S +RVR+K++G  V +EVD  + GRW  C+ +  +   ADW   S +GI   T
Sbjct:    1 MMRSIAALLCVLVALCASAVHAVRLDELSFKPPFNRVDGDGRRIVNDTWTYGGSAETKKNFIRLTTDRQSKRGYLWQRDQLNRDTFTAVMTFRISGVGKRWFGDGIGLWFT--NHRSFVQGPNHGFTDRFTGVGVVIDTFNN--------PEHRGGHKDVSIQVNDGSKDINMINDQTRVGCDAAVRYHEQSAAFDPVHSMSRVRVKIDGRKVVVEVDPSSNGRWESCAEVT-VPFAADWLRSSTIGITGAT 241          
BLAST of mRNA_Ecto-sp13_S_contig10168.194.1 vs. uniprot
Match: K3WDP7_GLOUD (L-type lectin-like domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WDP7_GLOUD)

HSP 1 Score: 120 bits (300), Expect = 8.090e-28
Identity = 80/256 (31.25%), Postives = 129/256 (50.39%), Query Frame = 1
Query:   61 QAVVAVVVGLACC--AVRVSGELKQQLSVLGPFDKHDHKGAR-IIPYFEKTGATNIMQSFVRLTPDKPEELGTLWSRSTIATSDFSLEWKFRISGAEKVKYGDTIALVIAPMKYKAGQEGRFF-----GIDEKFTGLVIVANTNRQLLNKDKLPGEPMGRHRDVSVIANNGTRNFGNLIDSLE-GCTANVRFDETRDDFN-VMQSTRVRLKVEGNTVAMEVDARNTGRWRRCSTMAHLDMPADWASKSNVGIIAKT 798
            + + A+    AC   A  VS E    L+   P+DK    G R +   FE  G+T++ ++FVRLTPD+  + G++WSR  + +  F     FRI G  K  +GD I + +         EGR+      G  +++ G+ I+ +T + +        E  G H+DV+V  N+G +    L D  + GC A  R+      F+ V  S+R+R+KV+GN + +E+D +N G+W +C     L    DW  ++ +GI A T
Sbjct:    4 KTLYALAAAAACALHATGVSAEALNHLTFKEPYDKVGLDGKRQLSDEFEVGGSTDVKKNFVRLTPDRQSKRGSIWSRRVVDSEKFVSVVTFRIHGQGKKWFGDGIGIWLT-------HEGRYVNGDNHGFTDQYYGVGIILDTFKNV--------EHRGGHKDVTVQINDGKKTLDMLNDETKIGCDAAFRYHSNSAAFDPVYSSSRLRIKVDGNKLTLEIDPKNEGKWSQCY-QGTLPFSQDWLRRATLGITAST 243          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10168.194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTE2_ECTSI3.890e-18495.52L-type lectin-like domain-containing protein n=2 T... [more]
A0A835YN92_9STRA2.490e-5244.34Concanavalin A-like lectin/glucanase domain-contai... [more]
A0A835YWL8_9STRA4.720e-5242.62Legume-like lectin family-domain-containing protei... [more]
A0A7S2B8C4_9STRA2.020e-3934.50Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A1V9ZF38_9STRA1.320e-3238.18Lectin n=1 Tax=Achlya hypogyna TaxID=1202772 RepID... [more]
A0A067C8K8_SAPPC1.900e-3133.20L-type lectin-like domain-containing protein n=2 T... [more]
A0A1W0A9K6_9STRA1.890e-3033.33Lectin n=1 Tax=Thraustotheca clavata TaxID=74557 R... [more]
A0A813CUN2_9DINO4.000e-3033.73LMAN2L protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A8K1CDM0_PYTOL1.510e-2831.75Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WDP7_GLOUD8.090e-2831.25L-type lectin-like domain-containing protein n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10168contigEcto-sp13_S_contig10168:1150..5549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score518.5
Seed ortholog evalue1.9e-144
Seed eggNOG ortholog2880.D7FTE2
Model size804
KEGG koko:K10080,ko:K10082
KEGG Pathwayko04141,map04141
Hectar predicted targeting categorysignal peptide
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030134,GO:0030135,GO:0030246,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791
Exons5
EggNOG free text desc.carbohydrate binding
EggNOG OGsKOG3839@1,KOG3839@2759
Ec32 ortholog descriptionLectin domain
Ec32 orthologEc-21_001000.1
Cds size804
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04091,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462512.240214-CDS-Ecto-sp13_S_contig10168:1149..13861681462512.240214-CDS-Ecto-sp13_S_contig10168:1149..1386Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10168 1150..1386 +
1681462512.252463-CDS-Ecto-sp13_S_contig10168:2456..25541681462512.252463-CDS-Ecto-sp13_S_contig10168:2456..2554Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10168 2457..2554 +
1681462512.2682972-CDS-Ecto-sp13_S_contig10168:3305..33661681462512.2682972-CDS-Ecto-sp13_S_contig10168:3305..3366Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10168 3306..3366 +
1681462512.2766001-CDS-Ecto-sp13_S_contig10168:4602..48481681462512.2766001-CDS-Ecto-sp13_S_contig10168:4602..4848Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10168 4603..4848 +
1681462512.2866106-CDS-Ecto-sp13_S_contig10168:5387..55491681462512.2866106-CDS-Ecto-sp13_S_contig10168:5387..5549Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10168 5388..5549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10168.194.1prot_Ecto-sp13_S_contig10168.194.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10168 1150..5549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10168.194.1

>prot_Ecto-sp13_S_contig10168.194.1 ID=prot_Ecto-sp13_S_contig10168.194.1|Name=mRNA_Ecto-sp13_S_contig10168.194.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=268bp
MAQQRMRRKQPRPGRRVGMVQAVVAVVVGLACCAVRVSGELKQQLSVLGP
FDKHDHKGARIIPYFEKTGATNIMQSFVRLTPDKPEELGTLWSRSTIATS
DFSLEWKFRISGAEKVKYGDTIALVIAPMKYKAGQEGRFFGIDEKFTGLV
IVANTNRQLLNKDKLPGEPMGRHRDVSVIANNGTRNFGNLIDSLEGCTAN
VRFDETRDDFNVMQSTRVRLKVEGNTVAMEVDARNTGRWRRCSTMAHLDM
PADWASKSNVGIIAKTSE
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mRNA from alignment at Ecto-sp13_S_contig10168:1150..5549+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10168.194.1 ID=mRNA_Ecto-sp13_S_contig10168.194.1|Name=mRNA_Ecto-sp13_S_contig10168.194.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4400bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10168:1150..5549+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCCAGCAGCGGATGCGGAGAAAACAGCCGAGGCCCGGGCGGCGTGT GGGCATGGTGCAAGCGGTAGTAGCTGTGGTGGTGGGATTGGCGTGCTGTG CGGTGCGTGTGAGCGGAGAGCTCAAGCAACAGCTCTCGGTGCTGGGGCCG TTCGACAAGCACGATCACAAGGGGGCGAGGATCATCCCTTACTTCGAGAA AACTGGTGCCACCAACATCATGCAGTCCTTCGTCAGGGTGAGCTGTAGTT GCCGTGGCTTGACCTGCACTGCGTGGGTGGTATTGGTTGCATACATACGT AGATCATGGCTACTGGTGCTCAAGAATAAAATACTCGGAAATTTTTGGGA GTCTGGAACCTGTTGCCTGGTGGAAAGAAGATGTGATTTTGCCCCTGGTC TAAAGCAGGCATGGATAGCCAAGTCGGCGGTCGAACATAGTATGGCCTTT CCCATTGTGCTGTCTACCGACACACTTCAAACGCAACCGGCGTTGCCGAG GTTGCTCGAGTTGTTTTTGATGATTTGGATCAGTCGCCTACGAAAGCGAG AGCAATACAGGGGCATGTATTAACAGCGGCTCCTCCTTTTGTTCGGAACA CTCCCGTCGCTTGATCGAAGCAAGAGATACTCCGGAGTCTCCTCTGCTTT TTAGGCCTCCAGGATGATTTCGGCGGCGAATGTACGCATTCACACACGCA TGGACGCATGGATGCCGGACTTGGTTGCTCACTGCTGCGCTTTTGCGCCC TCGTTGACATGTGCCACGTTTGTTGAGCTCCGCCATAAGCGAAAGAACCA GCGTTTAACGGTCCACATGGACGTTCATGGTTCCGCATCGGCATCTGTCG TGTGATACAAGTACACCGTATTCCACACAAGAAAACACGCCCCGGTCATA ACGTTAGGGCTTCTAAAATAATTATCACCAGGGGTGGTATTGGGCGCGGG GTATGGTGCTGTTCGTCCTCCTATTTCCTGATTTGAGAGTACGTTCGTTT TGGTTTTTGGCTCATTTCGAGCCGTAGAAACAACTGCCACTGGGTGTGAA ATGTGCGGGGGGGGGGGTGTTGTCTTCTGTGGGTGTATCTTGCGCGGTAT CCACATGCACTGTAACCGCAGCCGTATCCTCCTGACGTTATTGTGCATCC ATCAGCGAGTGGTGAGGATTCTTGACGGCCTCCCAGAGCCGCCGGGCCCT AGATAACCGCAACAAATGCTTGACGTATTTCGCCCCTTCTTTTGCGGCGC GAACAACCTTCGTCTCTATCGCGTGTCATACCCCTTCATGGCGTGGAAAT TTTGAAGCTGACCCCGGATAAGCCGGAAGAGCTAGGGACGCTATGGTCGA GGTCAACCATTGCGACGTCAGATTTCTCCCTCGAGTGGAAATTCCGAATC AGCGGGTAAGCCCTCGTCGCCTGTGCCCGCCACCACCCTCCCGTATTCCC CCCAGCTTCCAGCCAGCCAGTACTGCGTGTCTTCCTTGTGTGTGACATCC ACGTCGTAGAGATAAGTCACACCGAGCAAATGGAACCGGTGTACCGGTTG CACCGGGGTGGTGGTTTACCTTTGTGCAGGGGGGGGGGGATGCGTGCGTG ACGAGGAGCTGCCGCAAACAGCAGCAAGTTCATCAGGAGAGAGGGCGGGA CGGGCTTTGATGCCCACGAACAGAGCAGTCGTTGTGCGTTTCGTTATTGT GGGTCACGCTGAGCTGCTTCCTGCAGGCAGTTTTTCTCTGACACGAAGAC CCTACCCCCCGAAAAAAACTTGCGTTGACATTGACTACAGTGTAGTCAAT GTAGCAAACCACGTGGCATCCGCGTACGTACCGCACGAGACCTCGCGTTT GCTCCTGTGAACCAGGGTGTTGTCGAGCTCGACCCCGTAGCCTTTGGGCG TGCTCAGGTGTTAACGTGCGACGCTATCGTGCACAACCATCGAGGAGATC GGCCGAGCGTGTGTTCCCCGAGCTGATGGGGGTGTTTGGTCATGTCCTGT TGCTTTCTCCGGACCGCTGACATCGCAAGCCTCTGACGCTCGCTCGTTCC GCCTCTGACGCTCGCTCGTTCCGCCTCTGTCTGCTGCTGCTGCTGCTGCT GCTGCTGCTGCTGCTGCTGCTGCTGCTACTGCTGCTGCCGCTGTGTGTCT CTGAAGGGCTGAGAAGGTCAAGTACGGGGATACCATCGCTCTGGTCATCG CACCGATGAAGTACAAGGTACATACGCTCTCTCGATGCGATCCGCGTATC CCCTCTGCTTGCTTTCCTCTCACGTAGCTGTGGGTTTTCCTGTTGTACTT TTCGTGGCGTTTTTGTCGCTGGCGTGTTTTCGGCGGTTTCGTGGTGTCCA CGCCAGCGTCAGTAGACTAGTGTGGCGAGGCTGGCGGCACATTTTGGGCG ACAAACACAAAGCCGTTGGGTAGAGCATTCCGAATGAAGAAGAAAAGCAG TCCTATGACAGTGAGGACCACTCGAGCTTCAAACACTCTATTTTTTTCCT GACGGAGTGCTTCCTCCCTCCAAGGGCTGCGTGCGCTGCATCATCGTCAG CATTCATGGAACGTGAAGAAGGGGCAATACGGAGTATGAATCTGTTGTAG AAAAGTGAGCAATACGTTGAGTGGGAGCCTGTGAACGGAGCTAGTTTTAC GGTCTGCCCTGCAGGAAAACGCCAAGCTTTCTTTGGCAACTTCTGTTGCT GTCGTGTTTTAGTGCCAACTTCGTTAGCGAGCAACAACAAACTGTTTTTA CGAAGTCGGGGTTGGTCACAACGATCCTTCAAGAGGCATGAGCTGGACCA GACGGTGCACTATCATCGCTCATTGGTCAACCTCCACCATCCCAAAATGT GGAAGACGACACAGAACTATCCGCCGAGCGCACGTCTTTGTGTCGTGCAA ATGCTGACCGAGCCAAAGCTGTTGTTGCCTTTCCTCTTGTTGTTTTCGGG CGGGGAGTGGGAGTTGGGGCGTTTATCTTCCAGCAGGGAAGCGCAATATC TCCGACTTGAGTATGTCATTTTTCTCACCTTTTGACCGCTCCCCACACCG GGCAATATACTGCAGGTTGCGTAAGATATCACACCCCCTGGGCCGATTTT CAGGGCTTCATCGGTTGAAAAGGCCATGACGTCGCCGAAAATGGCGGAGT TGGATTCGTCCCGTCGAGAGCTTTTACCTTCAGCAACATCTTCGTCATGA AGAAATCAAGCTTTGAAAATTGGTCCAGGGGGTATGGTATCTTGTGTCAT GTCACCTACGGCAATGGCCCCGCTTCCTCGGCATTGACCAGAACTTCACG GGTATTAGTAGAAAGTAAAGCACAGCAGGTAGCCCAACTTATCACCGCTG CCAACGTAACACTTGAACTGCGGATGACGCGTTTTTTCCTGCTACACCCT GTTCAGAAGGTAACAAAGAAGAAACGTGTGCGTCGTTTTTGTTGGTTCTC CAGGCGGGGCAAGAAGGGCGTTTCTTCGGGATCGACGAGAAGTTCACGGG CCTGGTTATCGTAGCCAACACCAACCGGCAGCTACTCAACAAGGACAAGC TGCCTGGGGAGCCCATGGGCCGGCACAGAGACGTGTCCGTCATCGCAAAC AATGGCACCCGGAACTTCGGCAACCTGATCGATTCCTTGGAGGGCTGCAC GGCTAACGTCAGGTTCGATGAGACAAGGGACGACTTCAACGTCATGCAGG TGAGGGCGGGTTGCTCGGCACGGGGAGATGTGGAGGCGGGGAGGGAGTGG CTTAGAGAGAAGGGTCGGGGAACGTTTGGCTCAGGTGGTTAAGTCGTGGC CGCCTCCCGACTAGGGCAGGTGCACTTGATAAAGCTCCCCCGGTCTTTTC TTGTGGTGCTGGTTGGATCCTCCAATCTAATTGGTTGCAATCTGTCGGGG GGGGGGGGGGGGGGGAAGAAGGAGTTGACACTGGGAGGGATGCTTCTGTT GCTTAGCGGTACGTATGTGCGATATTAGGGCAGGCCTCGCCCGGACCCGC TGTTGGTGTCGATGTACCCCCGCTTGTGTAGGGTGTGTGGGGGAGATGGC AAGGCGACATCGAGAACACCGGGGCCAATATTTCGCGATTGAGAAGGATT CACGGCCTATTTGTCAGATTCTTAGTTGTCGACGCCACGACCATGCTTGT TTCTGTCGATCCTGGAAGTTCTCATACCCCCCCCGCACCCCGTTCGCCGC CAACGTTTTGCTCTCCTTCCGCCCTCTGCTGCACGTAGTCCACCCGCGTC CGCCTGAAGGTAGAGGGGAACACGGTTGCGATGGAAGTAGACGCTAGGAA CACGGGGCGGTGGCGACGTTGCTCGACGATGGCCCACCTCGACATGCCGG CGGACTGGGCGTCCAAGTCGAACGTGGGTATCATCGCCAAGACTTCTGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10168:1150..5549+

>mRNA_Ecto-sp13_S_contig10168.194.1 ID=mRNA_Ecto-sp13_S_contig10168.194.1|Name=mRNA_Ecto-sp13_S_contig10168.194.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=804bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10168:1150..5549+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCCAGCAGCGGATGCGGAGAAAACAGCCGAGGCCCGGGCGGCGTGT
GGGCATGGTGCAAGCGGTAGTAGCTGTGGTGGTGGGATTGGCGTGCTGTG
CGGTGCGTGTGAGCGGAGAGCTCAAGCAACAGCTCTCGGTGCTGGGGCCG
TTCGACAAGCACGATCACAAGGGGGCGAGGATCATCCCTTACTTCGAGAA
AACTGGTGCCACCAACATCATGCAGTCCTTCGTCAGGCTGACCCCGGATA
AGCCGGAAGAGCTAGGGACGCTATGGTCGAGGTCAACCATTGCGACGTCA
GATTTCTCCCTCGAGTGGAAATTCCGAATCAGCGGGGCTGAGAAGGTCAA
GTACGGGGATACCATCGCTCTGGTCATCGCACCGATGAAGTACAAGGCGG
GGCAAGAAGGGCGTTTCTTCGGGATCGACGAGAAGTTCACGGGCCTGGTT
ATCGTAGCCAACACCAACCGGCAGCTACTCAACAAGGACAAGCTGCCTGG
GGAGCCCATGGGCCGGCACAGAGACGTGTCCGTCATCGCAAACAATGGCA
CCCGGAACTTCGGCAACCTGATCGATTCCTTGGAGGGCTGCACGGCTAAC
GTCAGGTTCGATGAGACAAGGGACGACTTCAACGTCATGCAGTCCACCCG
CGTCCGCCTGAAGGTAGAGGGGAACACGGTTGCGATGGAAGTAGACGCTA
GGAACACGGGGCGGTGGCGACGTTGCTCGACGATGGCCCACCTCGACATG
CCGGCGGACTGGGCGTCCAAGTCGAACGTGGGTATCATCGCCAAGACTTC
TGAG
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