mRNA_Ecto-sp13_S_contig8016.19334.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8016.19334.1
Unique NamemRNA_Ecto-sp13_S_contig8016.19334.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8016.19334.1 vs. uniprot
Match: D7FI79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI79_ECTSI)

HSP 1 Score: 225 bits (574), Expect = 7.520e-65
Identity = 128/156 (82.05%), Postives = 133/156 (85.26%), Query Frame = 1 
Query:   70 LTAVGLGSVGNQENRDSEVRGLRARLMSLRYLLDTFLALEGEQGRAFDADGLREFLDLGAEGSKKGSRDGGAEETAWENFPYRRDALRRSLMGFARKGEASAVGVLMERHPLETLPARLEALSALPETLDPRSYASLLPCCGVVAPTASSASAAGV 537
            +TAVGLGS G++   DSEVR LRARLMSLRYLLDTFLALEGEQGR FD  GLREFL LG       S DGGAEE AWE+FPYRRD LRRSLMGFARKG+ASAVGVLMERHPLETLPARLEALSALPETLDPR YASLLPCCG VA TAS ASAAGV
Sbjct:  783 VTAVGLGSAGDEG--DSEVRRLRARLMSLRYLLDTFLALEGEQGRGFDVGGLREFLGLG-------SGDGGAEERAWEDFPYRRDNLRRSLMGFARKGKASAVGVLMERHPLETLPARLEALSALPETLDPRLYASLLPCCGAVALTAS-ASAAGV 928
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BLAST of mRNA_Ecto-sp13_S_contig8016.19334.1 vs. uniprot
Match: A0A6H5JI52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI52_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 8.190e-62
Identity = 109/122 (89.34%), Postives = 113/122 (92.62%), Query Frame = 1 
Query:   70 LTAVGLGSVGNQENRDSEVRGLRARLMSLRYLLDTFLALEGEQGRAFDADGLREFLDLGAEGSKKGSRDGGAEETAWENFPYRRDALRRSLMGFARKGEASAVGVLMERHPLETLPARLEAL 435
            + AVGLGS G++ +RDSEVR LRARLMSLRYLLDTFLALEGEQG AFDADGLREFL  GAEGSKKG  DGGAEETAWENFPYRRDALRRSLMGFARKGEASAVGVLMERHPLETLPARLEAL
Sbjct:  163 VAAVGLGSAGDEGDRDSEVRRLRARLMSLRYLLDTFLALEGEQGCAFDADGLREFLGRGAEGSKKGLGDGGAEETAWENFPYRRDALRRSLMGFARKGEASAVGVLMERHPLETLPARLEAL 284
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BLAST of mRNA_Ecto-sp13_S_contig8016.19334.1 vs. uniprot
Match: A0A2V0PEG0_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PEG0_9CHLO)

HSP 1 Score: 53.5 bits (127), Expect = 5.660e-5
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:  328 LRRSLMGFARKGEASAVGVLMERHPLETLPARLEALSALPETLDPRSYASLLP 486
            L  + +  A  G A+A+G L+ RHP    P  L  LSALPETLDPR+Y++LLP
Sbjct:  676 LPAAALAVASTGNAAALGALIARHPAALGPHLLRILSALPETLDPRTYSALLP 728
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8016.19334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FI79_ECTSI7.520e-6582.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JI52_9PHAE8.190e-6289.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2V0PEG0_9CHLO5.660e-550.94Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8016contigEcto-sp13_S_contig8016:654..2095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score226.5
Seed ortholog evalue1e-56
Seed eggNOG ortholog2880.D7FI79
Model size559
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2D0V1@1,2SFKQ@2759
Cds size558
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464074.35531-CDS-Ecto-sp13_S_contig8016:653..7741681464074.35531-CDS-Ecto-sp13_S_contig8016:653..774Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8016 654..774 -
1681464074.3679788-CDS-Ecto-sp13_S_contig8016:1462..16341681464074.3679788-CDS-Ecto-sp13_S_contig8016:1462..1634Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8016 1463..1634 -
1681464074.379397-CDS-Ecto-sp13_S_contig8016:1830..20951681464074.379397-CDS-Ecto-sp13_S_contig8016:1830..2095Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8016 1831..2095 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8016.19334.1prot_Ecto-sp13_S_contig8016.19334.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8016 654..2095 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8016.19334.1

>prot_Ecto-sp13_S_contig8016.19334.1 ID=prot_Ecto-sp13_S_contig8016.19334.1|Name=mRNA_Ecto-sp13_S_contig8016.19334.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=186bp
MVLAGGGRAAGGRGGGMGGGGGGLTAVGLGSVGNQENRDSEVRGLRARLM
SLRYLLDTFLALEGEQGRAFDADGLREFLDLGAEGSKKGSRDGGAEETAW
ENFPYRRDALRRSLMGFARKGEASAVGVLMERHPLETLPARLEALSALPE
TLDPRSYASLLPCCGVVAPTASSASAAGVGSSAGAT
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mRNA from alignment at Ecto-sp13_S_contig8016:654..2095-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8016.19334.1 ID=mRNA_Ecto-sp13_S_contig8016.19334.1|Name=mRNA_Ecto-sp13_S_contig8016.19334.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1442bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8016:654..2095- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTACTGGCTGGAGGTGGCCGTGCTGCTGGCGGAAGAGGTGGCGGTAT
GGGTGGCGGCGGTGGCGGGTTGACGGCGGTAGGGCTTGGGTCCGTGGGCA
ATCAGGAGAACAGGGACAGCGAGGTGCGGGGGCTGCGCGCGCGACTGATG
TCCCTGCGGTACCTGTTGGACACGTTCCTGGCCCTGGAAGGGGAGCAAGG
GCGCGCTTTCGACGCGGACGGACTGCGGGAGTTCCTGGATCTCGGCGCGG
AGGGGTCGAAGAAGGGTGAGGCCTGGCGCCGTGGTAGCTCACGGAAGGAC
AACAATTCTTATTTTTCGTCCCCTGTTTTGGACTATACTGTACTACGGCC
ACATCAAGCGAGGGCTGCTGACGTACTTACATACATCACCGCGCCGATCG
TGGTGGTGGTCCGCTGCTTTTCCCCACCGCCCTACGAATATCGCTCTCTG
TTTCCAAGCAGGGTCGCGAGACGGTGGTGCCGAGGAGACAGCGTGGGAGA
ACTTCCCGTACAGGAGAGACGCTCTCCGGAGATCGTTGATGGGGTTTGCG
CGCAAGGGGGAGGCGTCGGCGGTGGGGGTGCTGATGGAGAGACACCCGCT
GGAGACGCTGCCGGCTAGGCTGGAGGCTCTCAGGTGGGCACTGCTGTGTT
GTGATGTGCCTTGCGGGTGTGTGTCAAGTCTGGAAGAGTGCGGGTCCCAA
GGGACGGGGGTTTGGTTCGGAGCGACTCTGTTGTGTGTGGACGGCGTGTT
GGGTTTCGTTTGAGGAGTTTTTTTGTGGTTGCGCGCAAGCGAAGAGTAGA
GCAACAGGCTGTTCGGTGTCTCGCTGGTGTTGATGCTGGTGCTGCTTGTG
AAGTCGATGCTGATTGTGATCTTGTTGTCGATGCTGATGCTAATGATCTT
GATGCCGATGCTGATTATCATCTTGTTGTCGGTGCTGATTGCTAATGATC
TTGATATTGATGTCGGTTTTTGTTGATTTCAGTGTCGGTGCTGATCGTGA
TGTTGACGTTGTTGATACGGCGACGCTCTGCTTCACAATGTCTTACGAAA
CAGACGCCAAGGGTTAGTCCACTGTATCCAACCGGGCTTTCTCCACACTC
ACCTCCAACACAGAACATCTCAAACAAGTAACTATCAGCCTTTCATAAGA
AACCGAACACACACTTCCGGAACCCCCCCTACCAGTGTATCCAGCAGAGT
TTCCTCCACACTCACTGCCGTCAAGTAGTATTCCAGTGTGATTTTACGTT
ACAGCCCTAAGGTACGGACGCGCACGTCAGGTACCCCCCCTCGCCCCCTG
CATACTGTTACCGTCTACCAGCGCCCTTCCAGAAACCCTTGACCCGAGGT
CGTACGCAAGCCTCCTGCCGTGCTGCGGGGTGGTAGCCCCCACCGCCTCC
TCTGCTTCCGCCGCTGGCGTCGGATCTTCCGCCGGGGCGACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8016:654..2095-

>mRNA_Ecto-sp13_S_contig8016.19334.1 ID=mRNA_Ecto-sp13_S_contig8016.19334.1|Name=mRNA_Ecto-sp13_S_contig8016.19334.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=558bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8016:654..2095- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTACTGGCTGGAGGTGGCCGTGCTGCTGGCGGAAGAGGTGGCGGTAT
GGGTGGCGGCGGTGGCGGGTTGACGGCGGTAGGGCTTGGGTCCGTGGGCA
ATCAGGAGAACAGGGACAGCGAGGTGCGGGGGCTGCGCGCGCGACTGATG
TCCCTGCGGTACCTGTTGGACACGTTCCTGGCCCTGGAAGGGGAGCAAGG
GCGCGCTTTCGACGCGGACGGACTGCGGGAGTTCCTGGATCTCGGCGCGG
AGGGGTCGAAGAAGGGGTCGCGAGACGGTGGTGCCGAGGAGACAGCGTGG
GAGAACTTCCCGTACAGGAGAGACGCTCTCCGGAGATCGTTGATGGGGTT
TGCGCGCAAGGGGGAGGCGTCGGCGGTGGGGGTGCTGATGGAGAGACACC
CGCTGGAGACGCTGCCGGCTAGGCTGGAGGCTCTCAGCGCCCTTCCAGAA
ACCCTTGACCCGAGGTCGTACGCAAGCCTCCTGCCGTGCTGCGGGGTGGT
AGCCCCCACCGCCTCCTCTGCTTCCGCCGCTGGCGTCGGATCTTCCGCCG
GGGCGACA
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