mRNA_Ecto-sp13_S_contig8.19304.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8.19304.1 vs. uniprot
Match: A0A6H5KYJ8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ8_9PHAE) HSP 1 Score: 274 bits (701), Expect = 2.790e-87 Identity = 157/174 (90.23%), Postives = 160/174 (91.95%), Query Frame = 2
Query: 74 MAVQQQQRRRHQPGCGQSPRQSDRSATAGAAAVVMAALALCGGLVEVSEAFLSPATGRLPLAAQTTSRATVAPVAASGSSSAAAGRRAGGICMSAGKTIEMYMPALSSTMEEGTIVQWLKEVGDKIEVGDPVMVVESDKADMDVESFEEGYLAAVLTEEGDSAKVGAAVALIVE 595
MAVQQQQR RH+PGCGQSPRQS+RS A +A LALCGGLVEVSEAFLSP TGRLP AAQTTSRATVAPVAA GSSS AAGRRAGGICMSAGKTIEMYMPALSSTMEEGTIVQWLKEVGDKIEVGDPVMVVESDKADMDVESFEEGYLAAVLTEEGDSAKVGAAVALIVE
Sbjct: 1 MAVQQQQRGRHRPGCGQSPRQSNRSGAAXXXXXXVA-LALCGGLVEVSEAFLSPVTGRLPFAAQTTSRATVAPVAARGSSSVAAGRRAGGICMSAGKTIEMYMPALSSTMEEGTIVQWLKEVGDKIEVGDPVMVVESDKADMDVESFEEGYLAAVLTEEGDSAKVGAAVALIVE 173
BLAST of mRNA_Ecto-sp13_S_contig8.19304.1 vs. uniprot
Match: D7FXE2_ECTSI (Dihydrolipoamide acetyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE2_ECTSI) HSP 1 Score: 153 bits (386), Expect = 3.760e-40 Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 2
Query: 350 MSAGKTIEMYMPALSSTMEEGTIVQWLKEVGDKIEVGDPVMVVESDKADMDVESFEEGYLAAVLTEEGDSAKVGAAVALIVE 595
MSAGKTIEMYMPALSSTMEEGTIVQWLKEVGDKIEVGDPVMVVESDKADMDVESFEEGYLAAVLTEEGDSAKVGAAVALIVE
Sbjct: 1 MSAGKTIEMYMPALSSTMEEGTIVQWLKEVGDKIEVGDPVMVVESDKADMDVESFEEGYLAAVLTEEGDSAKVGAAVALIVE 82
BLAST of mRNA_Ecto-sp13_S_contig8.19304.1 vs. uniprot
Match: A0A7S1FY38_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FY38_9STRA) HSP 1 Score: 115 bits (287), Expect = 1.630e-27 Identity = 58/85 (68.24%), Postives = 71/85 (83.53%), Query Frame = 2
Query: 371 EMYMPALSSTMEEGTIVQWLKEVGDKIEVGDPVMVVESDKADMDVESFEEGYLAAVLTEEGDSAKVGAAVALIVERYVRLSREAA 625
E++MPALSSTM EG IV WLK+VG+K++ GDP+MVVESDKADMDVE+FE+GYLAA+L EEGD A VGAAV +IVE ++ AA
Sbjct: 65 ELFMPALSSTMTEGKIVTWLKDVGEKVQAGDPIMVVESDKADMDVEAFEDGYLAAILVEEGDMANVGAAVGVIVENEGDVAAVAA 149
BLAST of mRNA_Ecto-sp13_S_contig8.19304.1 vs. uniprot
Match: A0A7S3ZKI1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZKI1_9STRA) HSP 1 Score: 108 bits (270), Expect = 1.200e-25 Identity = 61/106 (57.55%), Postives = 75/106 (70.75%), Query Frame = 2
Query: 308 SSSAAAGRRAGGICMSAGKTIEMYMPALSSTMEEGTIVQWLKEVGDKIEVGDPVMVVESDKADMDVESFEEGYLAAVLTEEGDSAKVGAAVALIVERYVRLSREAA 625
S SAAA A A +++ + MPALSSTM GTIV WLK VGDK+E GDPVMVVESDKADM+VESF+EGY+A++L +EG A VGA VAL+ ++ AA
Sbjct: 1 SRSAAAPAAAAAPAGDAPESVSVTMPALSSTMTSGTIVSWLKNVGDKVEAGDPVMVVESDKADMEVESFDEGYVASILVDEGSEADVGAVVALLAPDEASIAEVAA 106
BLAST of mRNA_Ecto-sp13_S_contig8.19304.1 vs. uniprot
Match: A0A7S0N9Z1_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0N9Z1_9CRYP) HSP 1 Score: 105 bits (263), Expect = 8.350e-24 Identity = 56/89 (62.92%), Postives = 68/89 (76.40%), Query Frame = 2
Query: 371 EMYMPALSSTMEEGTIVQWLKEVGDKIEVGDPVMVVESDKADMDVESFEEGYLAAVLTEEGDSAKVGAAVALIVERYVRLSREAAMNRG 637
++ MPALSSTM+EG IVQW K VGD++E GD VMVVESDKADMDVE+FE GYLA +L EG + VG+AVALIV+ L + AA+ G
Sbjct: 79 DVTMPALSSTMKEGKIVQWTKSVGDRVEAGDIVMVVESDKADMDVEAFESGYLAKILVPEGSAGAVGSAVALIVQDKADLDKVAAVAAG 167
BLAST of mRNA_Ecto-sp13_S_contig8.19304.1 vs. uniprot
Match: A0A836C7H2_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7H2_9STRA) HSP 1 Score: 112 bits (279), Expect = 1.510e-23 Identity = 58/77 (75.32%), Postives = 68/77 (88.31%), Query Frame = 2
Query: 365 TIEMYMPALSSTMEEGTIVQWLKEVGDKIEVGDPVMVVESDKADMDVESFEEGYLAAVLTEEGDSAKVGAAVALIVE 595
T E+ MPALSSTM EG IVQWLKEVGD+++VGD VMVVESDKADMDVESFE G+LAA+LT EG++A VGAAVA++ E
Sbjct: 10 TKEIIMPALSSTMTEGKIVQWLKEVGDEVQVGDAVMVVESDKADMDVESFEAGFLAAILTPEGEAAPVGAAVAVLAE 86
BLAST of mRNA_Ecto-sp13_S_contig8.19304.1 vs. uniprot
Match: A0A7J7IHU4_9RHOD (Lipoyl-binding domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IHU4_9RHOD) HSP 1 Score: 107 bits (266), Expect = 2.010e-23 Identity = 58/82 (70.73%), Postives = 68/82 (82.93%), Query Frame = 2
Query: 371 EMYMPALSSTMEEGTIVQWLKEVGDKIEVGDPVMVVESDKADMDVESFEEGYLAAVLTEEGDSAKVGAAVALI---VERYVR 607
E+++PALSSTM EG IVQWLK+VGD+IE GD V+VVESDKADMDVE+FEEGYLA +L +EG+SA VGA V LI VE Y R
Sbjct: 156 EVFLPALSSTMTEGKIVQWLKQVGDRIEKGDIVLVVESDKADMDVEAFEEGYLAQILVKEGESAPVGATVGLIAKTVEGYRR 237
BLAST of mRNA_Ecto-sp13_S_contig8.19304.1 vs. uniprot
Match: B8C489_THAPS (Lipoyl-binding domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C489_THAPS) HSP 1 Score: 102 bits (255), Expect = 3.050e-23 Identity = 54/95 (56.84%), Postives = 72/95 (75.79%), Query Frame = 2
Query: 365 TIEMYMPALSSTMEEGTIVQWLKEVGDKIEVGDPVMVVESDKADMDVESFEEGYLAAVLTEEGDSAKVGAAVALIVERYVRLSREAAMNRGHGGD 649
+I++ MPALSSTM+EG +V WLK+ GD+IE G+ +MVVESDKADMDVE+FE+GYLA +LT EG++A+VGA VAL+ + A+ GGD
Sbjct: 4 SIKITMPALSSTMKEGRVVSWLKQEGDEIEAGEAIMVVESDKADMDVEAFEDGYLAKILTGEGETAEVGAVVALVATS----EEDIAVVAAGGGD 94
BLAST of mRNA_Ecto-sp13_S_contig8.19304.1 vs. uniprot
Match: A0A3D1PBD9_9CYAN (Dihydrolipoyllysine-residue acetyltransferase (Fragment) n=1 Tax=Cyanobacteria bacterium UBA11049 TaxID=2055787 RepID=A0A3D1PBD9_9CYAN) HSP 1 Score: 100 bits (250), Expect = 6.310e-23 Identity = 50/81 (61.73%), Postives = 63/81 (77.78%), Query Frame = 2
Query: 371 EMYMPALSSTMEEGTIVQWLKEVGDKIEVGDPVMVVESDKADMDVESFEEGYLAAVLTEEGDSAKVGAAVALIVERYVRLS 613
E++MPALSSTM EG IV W+K GDK+E G+ V+VVESDKADMDVESF EGY+A +L G+SA VGAA+AL+ E ++
Sbjct: 4 EVFMPALSSTMTEGKIVSWVKSPGDKVEKGETVVVVESDKADMDVESFYEGYIATILVNAGESASVGAAIALVAETEAEIA 84
BLAST of mRNA_Ecto-sp13_S_contig8.19304.1 vs. uniprot
Match: A0A7S3E7J0_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E7J0_9RHOD) HSP 1 Score: 109 bits (273), Expect = 6.720e-23 Identity = 56/78 (71.79%), Postives = 68/78 (87.18%), Query Frame = 2
Query: 362 KTIEMYMPALSSTMEEGTIVQWLKEVGDKIEVGDPVMVVESDKADMDVESFEEGYLAAVLTEEGDSAKVGAAVALIVE 595
KT +++MPALSSTM EG IVQWLK+ GD ++VG+ +MVVESDKADMDVESFE+GYLA +LTEEG+SA VGA VAL+ E
Sbjct: 58 KTKDVFMPALSSTMTEGRIVQWLKQPGDFVDVGEIIMVVESDKADMDVESFEKGYLAQILTEEGESAGVGATVALLAE 135 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8.19304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8.19304.1 >prot_Ecto-sp13_S_contig8.19304.1 ID=prot_Ecto-sp13_S_contig8.19304.1|Name=mRNA_Ecto-sp13_S_contig8.19304.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=200bp MAVQQQQRRRHQPGCGQSPRQSDRSATAGAAAVVMAALALCGGLVEVSEAback to top mRNA from alignment at Ecto-sp13_S_contig8:1632..3770- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8.19304.1 ID=mRNA_Ecto-sp13_S_contig8.19304.1|Name=mRNA_Ecto-sp13_S_contig8.19304.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2139bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8:1632..3770- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8:1632..3770- >mRNA_Ecto-sp13_S_contig8.19304.1 ID=mRNA_Ecto-sp13_S_contig8.19304.1|Name=mRNA_Ecto-sp13_S_contig8.19304.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8:1632..3770- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |