mRNA_Ecto-sp13_S_contig7996.19299.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7996.19299.1
Unique NamemRNA_Ecto-sp13_S_contig7996.19299.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7996.19299.1 vs. uniprot
Match: D7FPD8_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPD8_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 7.720e-9
Identity = 39/65 (60.00%), Postives = 41/65 (63.08%), Query Frame = -1 
Query:   10 SDRLLMGMGAPATTAAVPVTAAAERGQGRNNINN-GIDNAVLNAAAGLEQGNFLSNMLALGEGNG 201
            SDRLLMGMGAPA                       GIDNA+LNAAAGLEQG+FLSNMLALG GNG
Sbjct:   83 SDRLLMGMGAPAXXXXXXXXXXXXXXXXXXXXXXXGIDNALLNAAAGLEQGDFLSNMLALGGGNG 147
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7996.19299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPD8_ECTSI7.720e-960.00Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7996contigEcto-sp13_S_contig7996:97..397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size301
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464070.805422-CDS-Ecto-sp13_S_contig7996:96..3961681464070.805422-CDS-Ecto-sp13_S_contig7996:96..396Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7996 97..396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7996.19299.1prot_Ecto-sp13_S_contig7996.19299.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7996 97..396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7996.19299.1

>prot_Ecto-sp13_S_contig7996.19299.1 ID=prot_Ecto-sp13_S_contig7996.19299.1|Name=mRNA_Ecto-sp13_S_contig7996.19299.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
PATAVPFPEGKHVRQEIPLLEPSRGVEHRVVYPVIDVVAPLSSLRGSGDR
DGGGSGGRAHPHQQAVAEPPPAGRGPQVVGGWSGRRRSPAPAAPRGRRDA
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mRNA from alignment at Ecto-sp13_S_contig7996:97..397+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7996.19299.1 ID=mRNA_Ecto-sp13_S_contig7996.19299.1|Name=mRNA_Ecto-sp13_S_contig7996.19299.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=301bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7996:97..397+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGCCACCGCCGTTCCCTTCCCCGAGGGCAAGCATGTTCGACAAGAAAT
TCCCTTGCTCGAGCCCAGCCGCGGCGTTGAGCACCGCGTTGTCTATCCCG
TTATTGATGTTGTTGCGCCCTTGTCCTCTCTCCGCGGCAGCGGTGACCGG
GACGGCGGCGGTAGTGGCGGGCGCGCCCATCCCCATCAGCAAGCGGTCGC
TGAGCCCCCCCCCGCCGGTCGGGGGCCGCAGGTAGTAGGGGGCTGGAGCG
GACGCCGACGGAGCCCCGCCCCCGCCGCCCCCCGCGGGCGGCGGGACGCC
C
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7996:97..397+

>mRNA_Ecto-sp13_S_contig7996.19299.1 ID=mRNA_Ecto-sp13_S_contig7996.19299.1|Name=mRNA_Ecto-sp13_S_contig7996.19299.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7996:97..397+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGCCACCGCCGTTCCCTTCCCCGAGGGCAAGCATGTTCGACAAGAAAT
TCCCTTGCTCGAGCCCAGCCGCGGCGTTGAGCACCGCGTTGTCTATCCCG
TTATTGATGTTGTTGCGCCCTTGTCCTCTCTCCGCGGCAGCGGTGACCGG
GACGGCGGCGGTAGTGGCGGGCGCGCCCATCCCCATCAGCAAGCGGTCGC
TGAGCCCCCCCCCGCCGGTCGGGGGCCGCAGGTAGTAGGGGGCTGGAGCG
GACGCCGACGGAGCCCCGCCCCCGCCGCCCCCCGCGGGCGGCGGGACGCC
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