mRNA_Ecto-sp13_S_contig7991.19293.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7991.19293.1
Unique NamemRNA_Ecto-sp13_S_contig7991.19293.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7991.19293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7991contigEcto-sp13_S_contig7991:3804..4605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size651
Hectar predicted targeting categoryother localisation
Exons2
Cds size363
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464070.3228667-CDS-Ecto-sp13_S_contig7991:3803..41661681464070.3228667-CDS-Ecto-sp13_S_contig7991:3803..4166Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7991 3804..4166 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464070.333927-UTR-Ecto-sp13_S_contig7991:4166..42051681464070.333927-UTR-Ecto-sp13_S_contig7991:4166..4205Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7991 4167..4205 +
1681464070.345821-UTR-Ecto-sp13_S_contig7991:4356..46051681464070.345821-UTR-Ecto-sp13_S_contig7991:4356..4605Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7991 4357..4605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7991.19293.1prot_Ecto-sp13_S_contig7991.19293.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7991 3804..4166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7991.19293.1

>prot_Ecto-sp13_S_contig7991.19293.1 ID=prot_Ecto-sp13_S_contig7991.19293.1|Name=mRNA_Ecto-sp13_S_contig7991.19293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
SLHHSTCHRHTASYQREGEKTALLPLQHSTQTHNKTAPSGQQRGLLPSSA
QTQRTTPETGGWDNKHSDTAPAASMPYISPLHSRWFHLLERAGYTGRVSI
LWAGSVSAKRPRGRAVIPGM*
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mRNA from alignment at Ecto-sp13_S_contig7991:3804..4605+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7991.19293.1 ID=mRNA_Ecto-sp13_S_contig7991.19293.1|Name=mRNA_Ecto-sp13_S_contig7991.19293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=802bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7991:3804..4605+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCACTGCACCACAGCACGTGCCATAGACACACAGCATCATACCAGAGAGA
GGGGGAAAAGACAGCATTGTTGCCGCTGCAACACAGCACACAGACACACA
ATAAAACAGCACCGAGCGGGCAACAGAGGGGACTGCTACCCAGCAGTGCA
CAGACGCAACGCACCACGCCAGAGACAGGTGGATGGGACAACAAGCATAG
CGACACGGCCCCGGCAGCATCGATGCCGTATATCTCCCCTCTACACAGTC
GCTGGTTTCATCTCTTGGAGCGTGCGGGCTACACTGGGAGGGTGAGCATC
CTGTGGGCCGGCTCCGTCTCTGCGAAGCGACCCAGAGGCAGAGCGGTGAT
ACCTGGTATGTGATGAAGGCTTGATTGCTACAGAGCTACACGAGGAAAAG
ACGCAAGGACCGGAGAACCCTTTCCGTGCCGCCGAGCTTGGCGCCAGCAG
CTGCGATGAAGCTGCTTCCAGGAAAGCTGCGACAACCTGCTTCCAGGTGC
TAGTTGGTATCATGATGGTCTGCTGCTGTGCACGTACGCCATCTGGTCGA
GAGTTGCATGCCGGCGTTACTCGTGCATCTTTGCCCAACGATGTGCCTTT
GCTATCGCGCCGCAGTCTGCGTCAACACCGGGCCACATCCCGGCGCTGGG
CGGGGGGCTCAACCTTCGGATATAACTGCTGTTGTCGTGGAAGCAACGCC
AACACCCGTCCCCATGCCGAATACTTACACCGAGCTTGGTTCTAAGCGAG
GGCGTCCAATGGGCGGCACCACCGAGCGAGGTGACAGCGTTGAAGACAGG
GC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7991:3804..4605+

>mRNA_Ecto-sp13_S_contig7991.19293.1 ID=mRNA_Ecto-sp13_S_contig7991.19293.1|Name=mRNA_Ecto-sp13_S_contig7991.19293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7991:3804..4605+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCACTGCACCACAGCACGTGCCATAGACACACAGCATCATACCAGAGAGA
GGGGGAAAAGACAGCATTGTTGCCGCTGCAACACAGCACACAGACACACA
ATAAAACAGCACCGAGCGGGCAACAGAGGGGACTGCTACCCAGCAGTGCA
CAGACGCAACGCACCACGCCAGAGACAGGTGGATGGGACAACAAGCATAG
CGACACGGCCCCGGCAGCATCGATGCCGTATATCTCCCCTCTACACAGTC
GCTGGTTTCATCTCTTGGAGCGTGCGGGCTACACTGGGAGGGTGAGCATC
CTGTGGGCCGGCTCCGTCTCTGCGAAGCGACCCAGAGGCAGAGCGGTGAT
ACCTGGTATGTGA
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