mRNA_Ecto-sp13_S_contig79889.19288.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig79889.19288.1
Unique NamemRNA_Ecto-sp13_S_contig79889.19288.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig79889.19288.1 vs. uniprot
Match: A0A6H5L3A6_9PHAE (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3A6_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 2.000e-75
Identity = 112/126 (88.89%), Postives = 119/126 (94.44%), Query Frame = 1 
Query:   31 MVPPPPMTAFLAAGHRTFPPKTLFPMIVQGSTQRISSGWSGGTRRPLRISMQDFSSSAYWNKVYSSGEDDSGQQAVSEWHVEGDVFVEEVERLLSAGGPSATTHTATGREEVAVLNVGCGTSTLWK 408
            MVPPPP+TAFLAAGHRTFPPKTL P++VQGS++RISSGWSGGTR PLR+SMQDFSSSAYWNKVYSSGEDDSGQQAVSEWHVEGD FVEEVERLL AGGPSAT HTA GREE AVLNVGCGTSTLW+
Sbjct:    1 MVPPPPLTAFLAAGHRTFPPKTLLPVVVQGSSRRISSGWSGGTRLPLRVSMQDFSSSAYWNKVYSSGEDDSGQQAVSEWHVEGDAFVEEVERLLPAGGPSATKHTAAGREEAAVLNVGCGTSTLWE 126
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig79889.19288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L3A6_9PHAE2.000e-7588.89Methyltransf_11 domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig79889contigEcto-sp13_S_contig79889:20..427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size408
Hectar predicted targeting categoryother localisation
Exons1
Cds size378
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464070.053593-UTR-Ecto-sp13_S_contig79889:19..491681464070.053593-UTR-Ecto-sp13_S_contig79889:19..49Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig79889 20..49 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464070.0653863-CDS-Ecto-sp13_S_contig79889:49..4271681464070.0653863-CDS-Ecto-sp13_S_contig79889:49..427Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig79889 50..427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig79889.19288.1prot_Ecto-sp13_S_contig79889.19288.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig79889 50..427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig79889.19288.1

>prot_Ecto-sp13_S_contig79889.19288.1 ID=prot_Ecto-sp13_S_contig79889.19288.1|Name=mRNA_Ecto-sp13_S_contig79889.19288.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
MVPPPPMTAFLAAGHRTFPPKTLFPMIVQGSTQRISSGWSGGTRRPLRIS
MQDFSSSAYWNKVYSSGEDDSGQQAVSEWHVEGDVFVEEVERLLSAGGPS
ATTHTATGREEVAVLNVGCGTSTLWK
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mRNA from alignment at Ecto-sp13_S_contig79889:20..427+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig79889.19288.1 ID=mRNA_Ecto-sp13_S_contig79889.19288.1|Name=mRNA_Ecto-sp13_S_contig79889.19288.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=408bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79889:20..427+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGGCTTCCTTCCATAGCCGCGAATACTATGGTCCCACCTCCACCAAT
GACGGCGTTCCTTGCAGCAGGCCATCGGACTTTTCCTCCCAAAACCCTAT
TTCCGATGATTGTCCAGGGCAGCACTCAAAGAATCAGCAGCGGATGGAGC
GGCGGGACACGCCGCCCGCTGCGGATAAGCATGCAAGACTTTTCGTCGTC
GGCGTATTGGAACAAAGTGTATTCCTCGGGAGAAGATGATAGCGGTCAAC
AGGCAGTGTCGGAGTGGCATGTTGAGGGCGACGTGTTTGTTGAGGAGGTC
GAACGATTACTCTCTGCTGGGGGTCCATCTGCTACTACGCATACTGCTAC
TGGTAGGGAGGAGGTTGCAGTCCTGAACGTCGGCTGCGGGACGAGCACAT
TGTGGAAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig79889:20..427+

>mRNA_Ecto-sp13_S_contig79889.19288.1 ID=mRNA_Ecto-sp13_S_contig79889.19288.1|Name=mRNA_Ecto-sp13_S_contig79889.19288.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79889:20..427+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCCCACCTCCACCAATGACGGCGTTCCTTGCAGCAGGCCATCGGAC
TTTTCCTCCCAAAACCCTATTTCCGATGATTGTCCAGGGCAGCACTCAAA
GAATCAGCAGCGGATGGAGCGGCGGGACACGCCGCCCGCTGCGGATAAGC
ATGCAAGACTTTTCGTCGTCGGCGTATTGGAACAAAGTGTATTCCTCGGG
AGAAGATGATAGCGGTCAACAGGCAGTGTCGGAGTGGCATGTTGAGGGCG
ACGTGTTTGTTGAGGAGGTCGAACGATTACTCTCTGCTGGGGGTCCATCT
GCTACTACGCATACTGCTACTGGTAGGGAGGAGGTTGCAGTCCTGAACGT
CGGCTGCGGGACGAGCACATTGTGGAAA
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