prot_Ecto-sp13_S_contig7957.19252.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7957.19252.1
Unique Nameprot_Ecto-sp13_S_contig7957.19252.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length178
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7957.19252.1 vs. uniprot
Match: D7G8Q6_ECTSI (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q6_ECTSI)

HSP 1 Score: 224 bits (572), Expect = 2.800e-72
Identity = 115/123 (93.50%), Postives = 118/123 (95.93%), Query Frame = 0 
Query:   56 MKHGVNLAAPFVGMKKEESIEYPFAKQFCIRRHDRGTRVMVVQEMAEEPSYAALPEGKLTHVLEGEDPLEAMGAAARAGLVTRIKASIEASGHAYRLGDFIVRVGKCKKGAVFRGLALEVRIR 178
            MKHGVNLAAPFVGMKKEE IEYPFAKQFCIRR+DRGTRVMVVQEMAEEPSYAA+PEGKLTHVLEGEDPLEAMGAAARAGLVTRIKASIE  GHAYRLGDF+VRVGKCKKGAVFRGLALEV  R
Sbjct:    1 MKHGVNLAAPFVGMKKEEGIEYPFAKQFCIRRNDRGTRVMVVQEMAEEPSYAAVPEGKLTHVLEGEDPLEAMGAAARAGLVTRIKASIE--GHAYRLGDFVVRVGKCKKGAVFRGLALEVEYR 121
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BLAST of mRNA_Ecto-sp13_S_contig7957.19252.1 vs. uniprot
Match: A0A835Z8G4_9STRA (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G4_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 4.790e-16
Identity = 53/121 (43.80%), Postives = 71/121 (58.68%), Query Frame = 0 
Query:   56 MKHGVNLAAPFVGM-KKEESIEYPFAKQFCIRRHDRGTRVMVVQEMAEEPSYAALPEGKLTHVLEGEDPLEAMGAAARAGLVTRIKASIEASGHAYRLGDFIVRVGKCKKGAVFRGLALEV 175
            M+ GVN A  F+G   +++   YPF +   +RR D   RV +VQEM +  +        L  VL G+D LEA   A +    TR+KA IE  G A+ LGDF VRVG C+KG+ +RGLA+EV
Sbjct:    1 MRFGVNTAVAFIGEGARQQDATYPFDRINVVRRSDEPGRVCLVQEMGKRAAT-------LEQVLVGDDALEA-DMAKKVPYPTRLKAVIE--GSAFSLGDFTVRVGTCRKGSTYRGLAMEV 111
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7957.19252.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8Q6_ECTSI2.800e-7293.50Mediator of RNA polymerase II transcription subuni... [more]
A0A835Z8G4_9STRA4.790e-1643.80Mediator of RNA polymerase II transcription subuni... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013921Mediator complex, subunit Med20PFAMPF08612Med20coord: 138..177
e-value: 2.7E-6
score: 26.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7957contigEcto-sp13_S_contig7957:21..1222 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7957.19252.1mRNA_Ecto-sp13_S_contig7957.19252.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7957 21..1222 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7957.19252.1 ID=prot_Ecto-sp13_S_contig7957.19252.1|Name=mRNA_Ecto-sp13_S_contig7957.19252.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=178bp
CSLYGKSIPQEESVQTEKELEHQIVQALGAEYLSRWVVEVTYKLKKRMKK
GSTNEMKHGVNLAAPFVGMKKEESIEYPFAKQFCIRRHDRGTRVMVVQEM
AEEPSYAALPEGKLTHVLEGEDPLEAMGAAARAGLVTRIKASIEASGHAY
RLGDFIVRVGKCKKGAVFRGLALEVRIR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013921Mediator_Med20