mRNA_Ecto-sp13_S_contig7955.19251.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7955.19251.1
Unique NamemRNA_Ecto-sp13_S_contig7955.19251.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7955.19251.1 vs. uniprot
Match: D8LEF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEF6_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 7.300e-17
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:    1 VYSADFHPTEPKLVSSSADKTVLIWEPNRKRNSRK 105
            VYSADFHPTEPKLVSSSADKTVLIWEPNRKRNSRK
Sbjct:   48 VYSADFHPTEPKLVSSSADKTVLIWEPNRKRNSRK 82
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BLAST of mRNA_Ecto-sp13_S_contig7955.19251.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.840e-14
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:    1 VYSADFHPTEPKLVSSSADKTVLIWEPNRKRNSRK 105
            VYS DFHPTEPKLVSSSADKTVLIWEPNRKRNSRK
Sbjct:  567 VYSTDFHPTEPKLVSSSADKTVLIWEPNRKRNSRK 601
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BLAST of mRNA_Ecto-sp13_S_contig7955.19251.1 vs. uniprot
Match: A0A835Z281_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z281_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.810e-6
Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 VYSADFHPTEPKLVSSSADKTVLIWEPNR--KRNSRK 105
            VY+  FHPTEP+LVS SAD+TV IW P++  +RN RK
Sbjct:   88 VYAVHFHPTEPRLVSGSADQTVRIWGPSKGGRRNGRK 124
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7955.19251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LEF6_ECTSI7.300e-17100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNQ7_9PHAE2.840e-1497.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z281_9STRA1.810e-662.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7955contigEcto-sp13_S_contig7955:7050..7157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size108
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size108
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464066.8385813-CDS-Ecto-sp13_S_contig7955:7049..71571681464066.8385813-CDS-Ecto-sp13_S_contig7955:7049..7157Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7955 7050..7157 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7955.19251.1prot_Ecto-sp13_S_contig7955.19251.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7955 7050..7157 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7955.19251.1

>prot_Ecto-sp13_S_contig7955.19251.1 ID=prot_Ecto-sp13_S_contig7955.19251.1|Name=mRNA_Ecto-sp13_S_contig7955.19251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=36bp
VYSADFHPTEPKLVSSSADKTVLIWEPNRKRNSRK*
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mRNA from alignment at Ecto-sp13_S_contig7955:7050..7157-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7955.19251.1 ID=mRNA_Ecto-sp13_S_contig7955.19251.1|Name=mRNA_Ecto-sp13_S_contig7955.19251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=108bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7955:7050..7157- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTACTCGGCTGACTTCCACCCCACCGAGCCGAAGCTCGTCTCTTCCAG
CGCGGACAAGACTGTGCTGATATGGGAGCCAAACAGGAAACGCAACTCGC
GGAAATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7955:7050..7157-

>mRNA_Ecto-sp13_S_contig7955.19251.1 ID=mRNA_Ecto-sp13_S_contig7955.19251.1|Name=mRNA_Ecto-sp13_S_contig7955.19251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=108bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7955:7050..7157- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTACTCGGCTGACTTCCACCCCACCGAGCCGAAGCTCGTCTCTTCCAG
CGCGGACAAGACTGTGCTGATATGGGAGCCAAACAGGAAACGCAACTCGC
GGAAATGA
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