mRNA_Ecto-sp13_S_contig10166.193.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10166.193.1
Unique NamemRNA_Ecto-sp13_S_contig10166.193.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10166.193.1 vs. uniprot
Match: D8LGD9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGD9_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 1.850e-34
Identity = 57/72 (79.17%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:    1 LNEEGLRRANGVGENDVEELNSPHPPPSPFLCGPLP*PWWKRTWSAIVEKGNEKLPPPVPQAKPSYNRDLKS 216
            +NEEGLRRANGVG+  VEE NS HPPPSPFLCGPLP P  +  WSAI++KG+EKLPPPVPQAKPSYNRDLKS
Sbjct:    1 MNEEGLRRANGVGKKGVEEPNSAHPPPSPFLCGPLPLPVVETVWSAILKKGDEKLPPPVPQAKPSYNRDLKS 72
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10166.193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGD9_ECTSI1.850e-3479.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10166contigEcto-sp13_S_contig10166:666..1148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size250
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_003680.1
Cds size111
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462512.192194-UTR-Ecto-sp13_S_contig10166:665..7321681462512.192194-UTR-Ecto-sp13_S_contig10166:665..732Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10166 666..732 -
1681462512.2008693-UTR-Ecto-sp13_S_contig10166:965..10371681462512.2008693-UTR-Ecto-sp13_S_contig10166:965..1037Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10166 966..1037 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462512.209432-CDS-Ecto-sp13_S_contig10166:1037..11481681462512.209432-CDS-Ecto-sp13_S_contig10166:1037..1148Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10166 1038..1148 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10166.193.1prot_Ecto-sp13_S_contig10166.193.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10166 1038..1148 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10166.193.1

>prot_Ecto-sp13_S_contig10166.193.1 ID=prot_Ecto-sp13_S_contig10166.193.1|Name=mRNA_Ecto-sp13_S_contig10166.193.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=37bp
LNEEGLRRANGVGENDVEELNSPHPPPSPFLCGPLP*
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mRNA from alignment at Ecto-sp13_S_contig10166:666..1148-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10166.193.1 ID=mRNA_Ecto-sp13_S_contig10166.193.1|Name=mRNA_Ecto-sp13_S_contig10166.193.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10166:666..1148- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGAACGAAGAGGGTCTCCGTCGAGCAAATGGGGTTGGCGAGAACGATGT
TGAAGAGCTGAACAGCCCACACCCTCCCCCCTCTCCCTTCTTGTGCGGTC
CTCTGCCCTAGCCGTGGTGGAAAAGGACGTGGTCGGCGATCGTCGAGAAG
GGGAACGAAAAGCTGCCGCCCCCAGTCCCTCAGGTAAAACATTGGTCGGA
GTACACTCACGGCTATGCCTACCTACGAACAAGGAGTTGGTACTAGTATC
ACGGGTTTCGTTGGTGGTGCAAGCAATATGTAAAGAGGCTAGCACGAGAA
ATTCCTATTGCCGACGTGCAATACGTTCGATCCACAAGATGAAACTGACC
GACGCTCAATTGCCTTGCTCTCTCTCTTGGCCCTCCGCTCTGCCGTCCCC
GTCGTTGTCTTTGCAGGCCAAGCCGTCCTACAACCGAGATTTAAAGTCGG
TGGCAAGGAAGGAGGGCAACATCAACACCCCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10166:666..1148-

>mRNA_Ecto-sp13_S_contig10166.193.1 ID=mRNA_Ecto-sp13_S_contig10166.193.1|Name=mRNA_Ecto-sp13_S_contig10166.193.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10166:666..1148- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGAACGAAGAGGGTCTCCGTCGAGCAAATGGGGTTGGCGAGAACGATGT
TGAAGAGCTGAACAGCCCACACCCTCCCCCCTCTCCCTTCTTGTGCGGTC
CTCTGCCCTAG
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