mRNA_Ecto-sp13_S_contig7945.19236.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7945.19236.1
Unique NamemRNA_Ecto-sp13_S_contig7945.19236.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7945.19236.1 vs. uniprot
Match: D7FJJ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJJ8_ECTSI)

HSP 1 Score: 313 bits (803), Expect = 2.250e-107
Identity = 169/180 (93.89%), Postives = 172/180 (95.56%), Query Frame = 1 
Query:    1 QSEAPVLYPRMDLPGAIRILEDDVSHVAKQRELAADMSKSIYYITPKYAVKDVERYSDGVHSSGSRGQSLASQLSAGMKRHLPPELTDRPAIGRTAAGGKLPGLKPLPAFDGKSLTALEDRERKSAEKGGAEKEKDKEDAGMLSDVEADVEEXXXXXXXAVDHYESGDXSGGDDEPAAVF 540
            QSEAPVLYPRMDLPG IRILEDDVSHVAKQRELAADMSKSIYYITPKYAVKDVERYSDGVHS G RGQSLASQLSAGMKRHLPPELTDRPAIG TAAGGKLPGLKPLPAFDGKSLTALED+ERKSAE GGAEKEKDKEDAGMLSDVEA+VEEXXXXX  AVDHYESG+ SGGDDEPAAVF
Sbjct:    5 QSEAPVLYPRMDLPGPIRILEDDVSHVAKQRELAADMSKSIYYITPKYAVKDVERYSDGVHSGGYRGQSLASQLSAGMKRHLPPELTDRPAIGTTAAGGKLPGLKPLPAFDGKSLTALEDKERKSAETGGAEKEKDKEDAGMLSDVEAEVEEXXXXXDYAVDHYESGNESGGDDEPAAVF 184
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7945.19236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJJ8_ECTSI2.250e-10793.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7945contigEcto-sp13_S_contig7945:4695..5237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size543
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionDNA-directed RNA polymerase III, subunit Rpc31
Ec32 orthologEc-04_006380.1
Cds size513
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464065.980101-CDS-Ecto-sp13_S_contig7945:4694..52071681464065.980101-CDS-Ecto-sp13_S_contig7945:4694..5207Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7945 4695..5207 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464065.9899638-UTR-Ecto-sp13_S_contig7945:5207..52371681464065.9899638-UTR-Ecto-sp13_S_contig7945:5207..5237Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7945 5208..5237 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7945.19236.1prot_Ecto-sp13_S_contig7945.19236.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7945 4695..5207 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7945.19236.1

>prot_Ecto-sp13_S_contig7945.19236.1 ID=prot_Ecto-sp13_S_contig7945.19236.1|Name=mRNA_Ecto-sp13_S_contig7945.19236.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=171bp
MDLPGAIRILEDDVSHVAKQRELAADMSKSIYYITPKYAVKDVERYSDGV
HSSGSRGQSLASQLSAGMKRHLPPELTDRPAIGRTAAGGKLPGLKPLPAF
DGKSLTALEDRERKSAEKGGAEKEKDKEDAGMLSDVEADVEEEEQDDDYA
VDHYESGDDSGGDDEPAAVF*
back to top

mRNA from alignment at Ecto-sp13_S_contig7945:4695..5237-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7945.19236.1 ID=mRNA_Ecto-sp13_S_contig7945.19236.1|Name=mRNA_Ecto-sp13_S_contig7945.19236.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=543bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7945:4695..5237- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGAGCGAGGCACCTGTTCTGTACCCTCGAATGGACCTCCCTGGGGCTAT
TCGAATCTTGGAAGACGACGTCAGCCATGTCGCCAAGCAGAGGGAGCTGG
CGGCAGATATGTCCAAGTCAATTTATTACATCACTCCCAAGTACGCGGTG
AAAGATGTTGAGAGGTACTCTGACGGCGTTCACTCGAGTGGCTCTCGAGG
ACAATCGCTTGCCAGCCAGTTGTCCGCCGGAATGAAGCGGCATCTTCCGC
CAGAACTTACGGACAGACCAGCGATAGGAAGGACGGCTGCCGGCGGAAAG
TTGCCGGGCCTGAAGCCATTGCCAGCATTCGACGGCAAGTCGCTCACAGC
TTTGGAAGACAGGGAAAGAAAAAGCGCCGAAAAGGGGGGGGCGGAAAAGG
AGAAGGACAAAGAGGATGCGGGCATGTTGAGCGATGTCGAAGCCGACGTA
GAAGAGGAAGAGCAGGACGACGACTATGCTGTTGATCACTACGAAAGTGG
GGACGACAGCGGAGGAGATGACGAACCGGCGGCTGTGTTTTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7945:4695..5237-

>mRNA_Ecto-sp13_S_contig7945.19236.1 ID=mRNA_Ecto-sp13_S_contig7945.19236.1|Name=mRNA_Ecto-sp13_S_contig7945.19236.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=513bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7945:4695..5237- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCTCCCTGGGGCTATTCGAATCTTGGAAGACGACGTCAGCCATGT
CGCCAAGCAGAGGGAGCTGGCGGCAGATATGTCCAAGTCAATTTATTACA
TCACTCCCAAGTACGCGGTGAAAGATGTTGAGAGGTACTCTGACGGCGTT
CACTCGAGTGGCTCTCGAGGACAATCGCTTGCCAGCCAGTTGTCCGCCGG
AATGAAGCGGCATCTTCCGCCAGAACTTACGGACAGACCAGCGATAGGAA
GGACGGCTGCCGGCGGAAAGTTGCCGGGCCTGAAGCCATTGCCAGCATTC
GACGGCAAGTCGCTCACAGCTTTGGAAGACAGGGAAAGAAAAAGCGCCGA
AAAGGGGGGGGCGGAAAAGGAGAAGGACAAAGAGGATGCGGGCATGTTGA
GCGATGTCGAAGCCGACGTAGAAGAGGAAGAGCAGGACGACGACTATGCT
GTTGATCACTACGAAAGTGGGGACGACAGCGGAGGAGATGACGAACCGGC
GGCTGTGTTTTAG
back to top