mRNA_Ecto-sp13_S_contig10162.192.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10162.192.1
Unique NamemRNA_Ecto-sp13_S_contig10162.192.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10162.192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10162contigEcto-sp13_S_contig10162:1638..3804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size747
Hectar predicted targeting categoryother localisation
Exons3
Cds size519
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462512.1215975-UTR-Ecto-sp13_S_contig10162:1637..18201681462512.1215975-UTR-Ecto-sp13_S_contig10162:1637..1820Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10162 1638..1820 +
1681462512.1616058-UTR-Ecto-sp13_S_contig10162:3759..38041681462512.1616058-UTR-Ecto-sp13_S_contig10162:3759..3804Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10162 3760..3804 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462512.1323779-CDS-Ecto-sp13_S_contig10162:1820..20801681462512.1323779-CDS-Ecto-sp13_S_contig10162:1820..2080Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10162 1821..2080 +
1681462512.1423788-CDS-Ecto-sp13_S_contig10162:2634..28601681462512.1423788-CDS-Ecto-sp13_S_contig10162:2634..2860Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10162 2635..2860 +
1681462512.1519725-CDS-Ecto-sp13_S_contig10162:3726..37591681462512.1519725-CDS-Ecto-sp13_S_contig10162:3726..3759Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10162 3727..3759 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10162.192.1prot_Ecto-sp13_S_contig10162.192.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10162 1821..3759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10162.192.1

>prot_Ecto-sp13_S_contig10162.192.1 ID=prot_Ecto-sp13_S_contig10162.192.1|Name=mRNA_Ecto-sp13_S_contig10162.192.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=173bp
MHPQNTNETYTLLLLLQVRAAAKGTHRTSDREGFLKPAACSSERISGGSK
YNMCAHPRSNGSSKRSIDESFLPPRCYNVESWVHIFRTITNMGGGSQIHG
PPAQACMLLAVWLLWLCTCLPSSHWRARTTTSLEATCPRFHHARTAGKNL
KGQLKKRPIRSQGDLSQTGGRG*
back to top

mRNA from alignment at Ecto-sp13_S_contig10162:1638..3804+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10162.192.1 ID=mRNA_Ecto-sp13_S_contig10162.192.1|Name=mRNA_Ecto-sp13_S_contig10162.192.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2167bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10162:1638..3804+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGCACACGAGACTGCTGTACGCCAAGGACAGCCGAAGGCACACATCAT
AGGAGGCGTAGGGGGCGACTGTCAGAGCCCGTTACCTGCTGTCGGCGGCA
CAAGCGAGGGAGGCGACACAGGTCAATCCACTGCTTGTGTTCATCTGTCT
GCAGGCCGCCGATCTAAAGCCTTTCCCACACAGATGCACCCCCAAAACAC
AAATGAGACGTACACACTGCTGCTGCTGCTGCAGGTCAGGGCGGCGGCCA
AAGGAACACATCGTACGAGCGATCGGGAGGGATTTTTGAAGCCCGCTGCC
TGCTCCTCGGAGCGTATAAGCGGAGGAAGCAAGTACAACATGTGTGCACA
TCCACGTAGCAACGGCAGCTCCAAGCGGTCGATTGATGAGAGCTTCTTAC
CCCCGCGCTGCTACAATGTGGAGTCCTGGGTACACATCTTCAGGTTCTTT
ATATCTTAGCATACGTTGAGTTGGGTAAATTAGCGTGTGACCACGGGAAT
CAGCCGCGTCAAGAGCTAGGTAGCACGGACAGGAACGGCTTCAACAACTT
CAGTACTGCTGTGCAAAAATGCTGGCGCCGACAGGAGCAGTGGCAATCAC
CATGCCTCCCAACGATGTTCCGCGAACGCCTGCTGGCTATCCGCTACGAC
AGCAGTTGTGCAAACGTCTATTATTGAAGCACACAGATAAAACATCGCGG
ATACAGCAAAGAAAACTGCTCAAATCAGCTTGTAAGTGATTGCGCTTGGC
GTGACAAGCAAGGGTCGTCTCGAGGTATGGGTATGACCGAACCATCTCTC
ACATGTACGTCCTAACTCTTTTCGAATACACCACGGACAGATCTTCCTCT
CACCGAGAGTGTCACACACAATGCCGCCGGAAGACTCCGTGCGATCCGCA
GTTCCCAAAACAGCGGGTCTGCGTGTAATGACTTCGGCGGCCGGGCTTAC
GGGCTTGCCGACGTGTTGCTCCGCGTATTGCTCCGAATGTGCGGCAGAAC
CATCACTAACATGGGGGGGGGATCACAGATACACGGACCCCCGGCCCAAG
CTTGCATGCTGCTTGCCGTCTGGTTGCTGTGGCTCTGCACTTGCTTGCCC
AGCAGCCACTGGCGGGCACGCACCACAACCTCCTTGGAGGCAACGTGCCC
TCGGTTCCATCATGCGCGCACGGCGGGAAAGAACTTAAAGGGACAGCTGA
AGAAGCGTCCCATCAGGTCTCAGGTACGCACTCAGCGTGCCACGCAGTAC
GCTAAAATTATGGCTTATGTGTTTCTAAAAGAGAAGGAAATCTCTGAGTA
GTTCCGGCCGTTTAGGCAAGGTATAAAGCGAAACCAGGGCACACAAAATG
TCTTCGCGTGTAGAACTGTAGAACATGACATGCTTGGGGTATCCTGCTGA
TTTCATAGCACGTAGCCATCTGTGCAGGGAACACCGTCGTCACCCTCACA
CCCACCGTCCGTGTTGTATAAACCGGGTAGGCCGAAGCTTGTAGGTTTGT
GTAGAAAGGCAGCTCGGCCGGTGAGGGCCGAGATGGGAAAGTCTTGTAAT
AGAGGGAAGAAAGAAGAGCAGAGACCACTCGAGAGCGAGCAGCCGAAGAA
GAGTGCGTCACCACACCTATCCGTCAAGCAATTCAGATCACTCATCGAAT
CTCCGAAGAAACCAAGCAGAAACTCCCTGTCATCCGCGATCTACCAACTG
CAATCTCCGTAGATCCATGTCCCAGATTCAACCACGTTACTATGCTACGA
GTAAATCTTAAAGCCCCCCTGCTCATATGCATTGTTATGACACGGCAAGT
CAATATAATTCCATAAGACCCAAAACGTGGATCCTACTCCTCCATGACAA
ACAAATAACCAAGAATGAATCCGATTATGCAAGTGTTCCTGACCCCACAA
CGTCTTGTCCCATCGTCTTCATTTCTTCTCTGCAAAACGCTCTTTTTCTG
GTCCACCCTTTCTCAGCACTTCGCCGCAACGACACCCGCAAAGTCCTTAT
GTCCCTCGCACACCTCAAAGCCTGAAACAATCCATTGACCCAAACCTATC
TGTGGAACTCCTTTTCGTTTACTTTCCAAAACACGTAAGGGTGACCTATC
TCAGACCGGCGGAAGGGGTTGAACCTTCTCTCGACTGTATGACCAGAGGA
GACTTCCGGAGCGACGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10162:1638..3804+

>mRNA_Ecto-sp13_S_contig10162.192.1 ID=mRNA_Ecto-sp13_S_contig10162.192.1|Name=mRNA_Ecto-sp13_S_contig10162.192.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10162:1638..3804+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACCCCCAAAACACAAATGAGACGTACACACTGCTGCTGCTGCTGCA
GGTCAGGGCGGCGGCCAAAGGAACACATCGTACGAGCGATCGGGAGGGAT
TTTTGAAGCCCGCTGCCTGCTCCTCGGAGCGTATAAGCGGAGGAAGCAAG
TACAACATGTGTGCACATCCACGTAGCAACGGCAGCTCCAAGCGGTCGAT
TGATGAGAGCTTCTTACCCCCGCGCTGCTACAATGTGGAGTCCTGGGTAC
ACATCTTCAGAACCATCACTAACATGGGGGGGGGATCACAGATACACGGA
CCCCCGGCCCAAGCTTGCATGCTGCTTGCCGTCTGGTTGCTGTGGCTCTG
CACTTGCTTGCCCAGCAGCCACTGGCGGGCACGCACCACAACCTCCTTGG
AGGCAACGTGCCCTCGGTTCCATCATGCGCGCACGGCGGGAAAGAACTTA
AAGGGACAGCTGAAGAAGCGTCCCATCAGGTCTCAGGGTGACCTATCTCA
GACCGGCGGAAGGGGTTGA
back to top