mRNA_Ecto-sp13_S_contig7872.19146.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7872.19146.1
Unique NamemRNA_Ecto-sp13_S_contig7872.19146.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7872.19146.1 vs. uniprot
Match: D7FX09_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX09_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 2.190e-7
Identity = 61/197 (30.96%), Postives = 89/197 (45.18%), Query Frame = 1 
Query:    1 VITTLLKIGTVIDGIPEAAI*MALVVGLMVVATGMLSQMFSCPRRQSKYSSRALRNIFFHSLGARLPMARL*RDFYGPDGNGVWRGHCGIHYAPFGCEGEKRFNLGEDNGSRRVE-RTCRDADAP-------CQILCCNPSKKGLYTAMLWLQFIGGGLTEATSVFVATLGGDLGPILSSWFGLYSLCISMIKATVQ 567
            V+  LL +GTV+D IP+ AI + L+ GL+V   G    + + P  Q +    ++RN+  +  G    +AR    +   DG  +               G K      DN    V   T     AP       C     N    G  T +L +Q I GGLTEA+S+F A +GG    I+S+WFGLYSL ++ + A  +
Sbjct:   50 VMRALLMVGTVVDAIPDVAILLGLLAGLVVAVVGKARAVIT-PTEQRRTPPISVRNVVKNVPG----LAR----YVFSDGKSITN-------FLINRVGHKETTW--DNTMELVAWHTLVFCHAPFLSVQRRCFRYQVNSQFNGYLTIIL-VQLIAGGLTEASSIFFAVMGGGTVSIVSAWFGLYSLVMTTMLAVYR 227
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7872.19146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FX09_ECTSI2.190e-730.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7872contigEcto-sp13_S_contig7872:409..1631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size842
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-24_001560.1
Cds size282
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464058.0990112-UTR-Ecto-sp13_S_contig7872:408..5951681464058.0990112-UTR-Ecto-sp13_S_contig7872:408..595Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7872 409..595 +
1681464058.1117222-UTR-Ecto-sp13_S_contig7872:976..12091681464058.1117222-UTR-Ecto-sp13_S_contig7872:976..1209Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7872 977..1209 +
1681464058.1326373-UTR-Ecto-sp13_S_contig7872:1491..16311681464058.1326373-UTR-Ecto-sp13_S_contig7872:1491..1631Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7872 1492..1631 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464058.1229258-CDS-Ecto-sp13_S_contig7872:1209..14911681464058.1229258-CDS-Ecto-sp13_S_contig7872:1209..1491Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7872 1210..1491 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7872.19146.1prot_Ecto-sp13_S_contig7872.19146.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7872 1210..1491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7872.19146.1

>prot_Ecto-sp13_S_contig7872.19146.1 ID=prot_Ecto-sp13_S_contig7872.19146.1|Name=mRNA_Ecto-sp13_S_contig7872.19146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=94bp
MLWLQFIGGGLTEATSVFVATLGGDLGPILSSWFGLYSLCISMIKATVQL
ISIFANALLTDFQMLPRLVVRGWRPRLPISCFPYYPRSPMAVA*
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mRNA from alignment at Ecto-sp13_S_contig7872:409..1631+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7872.19146.1 ID=mRNA_Ecto-sp13_S_contig7872.19146.1|Name=mRNA_Ecto-sp13_S_contig7872.19146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1223bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7872:409..1631+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGATAACAACTCTCTTGAAGATTGGCACCGTCATCGATGGCATACCTGA
AGCTGCCATTTGAATGGCGCTCGTGGTTGGTCTGATGGTTGTTGCCACAG
GGATGCTATCGCAAATGTTCTCGTGCCCTCGGCGCCAGTCCAAATATTCA
TCAAGAGCGTTGCGCAACATCTTCTTCCATTCCTTGGGTCAGTCGTGTGA
AGGTATCTTATTCATCAGCTGTCCTGATTGGTTTGGTGTCAGATGTAGCA
ATCGGCGTGTTCTAGTGTTCACGAGGCCGTTGCATGGATGGCACTGACTG
CAGTCACAGCGTGTCGTTGCAGCGTGATGGAAAACTCGAAATGAGCTTTT
CAAGAGCGTTCACGTGGTAGGCCGGTTAACCTTTCTTTTGGCTGCAACTT
TTCTGAAAAGGAAAAAATATAGAGCGATGGTGTGCTGTAGCGGGCCATAC
AACAAAATGCATGTCTTGAAGGAAATATGTGTGCTCCATTTATTAAAAAC
GTTTTTTCCTCATGTCTGACTGCTCAAGAAGAGTGCAAAACCGCACACAT
TTGACCCTCTTGTCCCAGGTGCGCGTTTGCCGATGGCAAGGCTATAGCGG
GATTTCTATGGCCCAGACGGGAACGGAGTATGGCGAGGCCACTGTGGGAT
TCATTATGCACCATTCGGATGTGAAGGAGAAAAACGATTTAACTTGGGAG
AAGACAATGGTTCTCGTCGGGTGGAACGTACTTGCCGTGACGCTGATGCT
CCCTGTCAAATTCTTTGCTGTAACCCCTCAAAGAAGGGCCTATACACGGC
GATGCTATGGCTACAGTTTATCGGCGGTGGGTTGACCGAGGCGACTTCTG
TCTTTGTTGCGACATTAGGGGGCGACCTAGGGCCTATTCTCAGCTCGTGG
TTTGGACTTTACTCGCTATGCATCAGCATGATTAAGGCAACGGTGCAACT
AATAAGCATTTTCGCAAACGCTCTACTGACCGATTTTCAGATGTTGCCTC
GTCTCGTTGTTCGCGGTTGGCGACCGAGGTTGCCAATTTCCTGCTTTCCC
TACTACCCGCGATCACCCATGGCGGTGGCATAGCGTTGATAATGTCGGGC
GTATCTTTCTTTTCGTCCACCGGTGTAGCCTCATACCAGGCGTGGCTCTT
GGTTCTCTTTGGCTCTCTTGTGGTTAATTTGGCATTGCAAGCGGTCATTG
GGCCTTCGACGATGCACACGATA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7872:409..1631+

>mRNA_Ecto-sp13_S_contig7872.19146.1 ID=mRNA_Ecto-sp13_S_contig7872.19146.1|Name=mRNA_Ecto-sp13_S_contig7872.19146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=282bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7872:409..1631+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTATGGCTACAGTTTATCGGCGGTGGGTTGACCGAGGCGACTTCTGT
CTTTGTTGCGACATTAGGGGGCGACCTAGGGCCTATTCTCAGCTCGTGGT
TTGGACTTTACTCGCTATGCATCAGCATGATTAAGGCAACGGTGCAACTA
ATAAGCATTTTCGCAAACGCTCTACTGACCGATTTTCAGATGTTGCCTCG
TCTCGTTGTTCGCGGTTGGCGACCGAGGTTGCCAATTTCCTGCTTTCCCT
ACTACCCGCGATCACCCATGGCGGTGGCATAG
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