mRNA_Ecto-sp13_S_contig7861.19132.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7861.19132.1
Unique NamemRNA_Ecto-sp13_S_contig7861.19132.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7861.19132.1 vs. uniprot
Match: A0A6H5L0V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0V0_9PHAE)

HSP 1 Score: 487 bits (1253), Expect = 1.150e-168
Identity = 241/255 (94.51%), Postives = 245/255 (96.08%), Query Frame = 1 
Query:    7 TMLLITRFITACTLLSCWSCQRCSGFVSSPLRSALLSPVGIKHHKHDNRSIRRRCGTRMAVAPTELWDSYLHALETAPLLTKSITAGCIFPAADAVAQRFDNKGQDDGELQQQWEIARTLRWLFFGFAVQAPWNHFFYVLLDGALPPTPDPLSTTTAVKVLIDQFVQAPIFTVVIFGVLGLLEGKAVADIREQLDQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSKGPGEAVEEA 771
            TMLLI RFITACTLL+CWSCQRCSGFV SPLRSALLSPVG+K HKHDNRSIRR   TRMA APTELWDSYLHALETAPLLTKSITAGCIFPAADAVAQRFD KGQDDGE+QQQ +IARTLRWLFFGFAVQAPWNHFFYV LDGALPPTPDPLSTTTAVKVLIDQFVQAPIFTVVIFGVLGLLEGKAVADIREQLDQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSKGPGEAVEEA
Sbjct:   18 TMLLIRRFITACTLLACWSCQRCSGFVCSPLRSALLSPVGMKQHKHDNRSIRRSGVTRMAAAPTELWDSYLHALETAPLLTKSITAGCIFPAADAVAQRFDTKGQDDGEVQQQLDIARTLRWLFFGFAVQAPWNHFFYVFLDGALPPTPDPLSTTTAVKVLIDQFVQAPIFTVVIFGVLGLLEGKAVADIREQLDQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSKGPGEAVEEA 272
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BLAST of mRNA_Ecto-sp13_S_contig7861.19132.1 vs. uniprot
Match: D7FP55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP55_ECTSI)

HSP 1 Score: 392 bits (1008), Expect = 1.050e-132
Identity = 192/197 (97.46%), Postives = 195/197 (98.98%), Query Frame = 1 
Query:  181 MAVAPTELWDSYLHALETAPLLTKSITAGCIFPAADAVAQRFDNKGQDDGELQQQWEIARTLRWLFFGFAVQAPWNHFFYVLLDGALPPTPDPLSTTTAVKVLIDQFVQAPIFTVVIFGVLGLLEGKAVADIREQLDQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSKGPGEAVEEA 771
            MA APTELWDSYLHALETAPLLTKSITAGCIFPAAD+VAQ FDNKGQDDGELQQQW+IARTLRWLFFGFAVQAPWNHFFYVLLDGALPPTPDPLSTTTAVKVLIDQFVQAPIFTVVIFGVLGLLEGKAVADIREQL+QDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSKGPGEAVEEA
Sbjct:    1 MAAAPTELWDSYLHALETAPLLTKSITAGCIFPAADSVAQWFDNKGQDDGELQQQWDIARTLRWLFFGFAVQAPWNHFFYVLLDGALPPTPDPLSTTTAVKVLIDQFVQAPIFTVVIFGVLGLLEGKAVADIREQLNQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSKGPGEAVEEA 197
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BLAST of mRNA_Ecto-sp13_S_contig7861.19132.1 vs. uniprot
Match: A0A7S2W2E8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W2E8_9STRA)

HSP 1 Score: 239 bits (609), Expect = 4.700e-72
Identity = 115/187 (61.50%), Postives = 139/187 (74.33%), Query Frame = 1 
Query:  196 TELWDSYLHALETAPLLTKSITAGCIFPAADAVAQRFDNKGQDDGELQQQWEIARTLRWLFFGFAVQAPWNHFFYVLLDGALPPTPDPLSTTTAVKVLIDQFVQAPIFTVVIFGVLGLLEGKAVADIREQLDQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSKGPGE 756
            TE W SY HALET PLLTKSITAG I  AAD   Q  +   + +GE     ++AR +R+ FFG  +QAPWNHF+Y LLDGALPPT DP +TTT +KV IDQFVQAP+FTV+IF  LGLLEGK +  +++QLD DYK TM+ANW ++VPA  VN+AFCPP LRVLFLN VFF W+IFLS  ++K   E
Sbjct:   54 TEAWVSYNHALETDPLLTKSITAGVILGAADLAGQALERSQKKEGEESSSVDLARAVRFAFFGLVLQAPWNHFYYQLLDGALPPTADPFTTTTGIKVAIDQFVQAPVFTVLIFYFLGLLEGKTMESVKQQLDNDYKDTMIANWKLWVPATAVNIAFCPPLLRVLFLNCVFFFWSIFLSLKLNKEEEE 240
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BLAST of mRNA_Ecto-sp13_S_contig7861.19132.1 vs. uniprot
Match: B8BXV6_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXV6_THAPS)

HSP 1 Score: 233 bits (594), Expect = 1.710e-70
Identity = 116/188 (61.70%), Postives = 140/188 (74.47%), Query Frame = 1 
Query:  199 ELWDSYLHALETAPLLTKSITAGCIFPAAD----AVAQRFDNKGQDDGEL--QQQWEIARTLRWLFFGFAVQAPWNHFFYVLLDGALPPTPDPLSTTTAVKVLIDQFVQAPIFTVVIFGVLGLLEGKAVADIREQLDQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSK 744
            E+W SYL+ALE+ PLL KS+TAG I  AAD    A+ Q       DD         +IAR LR+ FFGF +QAPWNHF+Y+LLDGALPPTPDP + TT +KVL+DQF+QAPIFTV+IF  LG LEGK V +I++QLD DY  TMLANW ++VPA  VN+AFCPP LRVLFLNVVFF W+IFLS  ++K
Sbjct:    4 EVWTSYLNALESDPLLVKSVTAGVILGAADLSGQAIQQSLAKANSDDATTITDSGVDIARFLRFAFFGFILQAPWNHFYYLLLDGALPPTPDPFTATTGIKVLVDQFIQAPIFTVIIFAFLGFLEGKTVEEIKKQLDDDYVDTMLANWKLWVPATAVNIAFCPPILRVLFLNVVFFFWSIFLSLKLNK 191
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BLAST of mRNA_Ecto-sp13_S_contig7861.19132.1 vs. uniprot
Match: A0A7S1YNW0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1YNW0_9STRA)

HSP 1 Score: 234 bits (596), Expect = 1.080e-69
Identity = 119/193 (61.66%), Postives = 144/193 (74.61%), Query Frame = 1 
Query:  196 TELWDSYLHALETAPLLTKSITAGCIFPAAD----AVAQRFDNKGQDDGELQ------QQWEIARTLRWLFFGFAVQAPWNHFFYVLLDGALPPTPDPLSTTTAVKVLIDQFVQAPIFTVVIFGVLGLLEGKAVADIREQLDQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSK 744
            TE W+SYL ALE  PLL KSITAG I  AAD    A+ Q       D+ EL          +IAR LR+ FFGF +QAPWNHF+Y +LDGALPPT DP ++TTA+KV+IDQF+QAPIFTV+IFG LG+LEGK++  I+EQLD+DY  TMLANW ++VPA  VN+AFCPP LRVLFLNVVFF W+IFLS  ++K
Sbjct:   79 TEAWNSYLDALEANPLLVKSITAGVILGAADLSGQALQQAIATNNDDNMELSTNNNNSNSVDIARFLRFAFFGFILQAPWNHFYYQILDGALPPTEDPFTSTTAIKVIIDQFIQAPIFTVIIFGFLGVLEGKSLDSIKEQLDEDYVDTMLANWKLWVPATAVNIAFCPPILRVLFLNVVFFFWSIFLSLKLNK 271
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BLAST of mRNA_Ecto-sp13_S_contig7861.19132.1 vs. uniprot
Match: A0A7S3PZB9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZB9_9STRA)

HSP 1 Score: 230 bits (587), Expect = 1.550e-68
Identity = 117/190 (61.58%), Postives = 140/190 (73.68%), Query Frame = 1 
Query:  205 WDSYLHALETAPLLTKSITAGCIFPAADAVAQRFD--NKGQDDGELQQQWEIARTLRWLFFGFAVQAPWNHFFYVLLDGALPPTPDPLSTTTAVKVLIDQFVQAPIFTVVIFGVLGLLEGKAVADIREQLDQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSKGPGEAVEE 768
            W SY  ALE  PLLTKSITAG I  AAD   Q  +  N G+D+       + AR  R+ FFGF +QAPWNHF+Y+ LDGALPPT DPLS TT +KV+IDQFVQAPIFTV+IF  LGLLEGK+ +D++EQLD+DYK TM ANW ++VPA  VN+AFCPP LRVLFLN VFF W+IFLS  ++    EA +E
Sbjct:   75 WTSYNIALEEDPLLTKSITAGVILGAADFAGQALERSNSGEDNPV-----DYARAARFAFFGFILQAPWNHFYYLFLDGALPPTEDPLSATTGIKVVIDQFVQAPIFTVIIFFFLGLLEGKSASDVKEQLDRDYKDTMFANWKLWVPATAVNIAFCPPILRVLFLNCVFFFWSIFLSLKLNSDGEEAPKE 259
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BLAST of mRNA_Ecto-sp13_S_contig7861.19132.1 vs. uniprot
Match: A0A7S0BVQ8_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BVQ8_9STRA)

HSP 1 Score: 229 bits (585), Expect = 3.830e-68
Identity = 116/208 (55.77%), Postives = 146/208 (70.19%), Query Frame = 1 
Query:  160 RRRCGTRMAVAP-------------TELWDSYLHALETAPLLTKSITAGCIFPAADAVAQRFDNKGQDDGELQQQWEIARTLRWLFFGFAVQAPWNHFFYVLLDGALPPTPDPLSTTTAVKVLIDQFVQAPIFTVVIFGVLGLLEGKAVADIREQLDQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSK 744
            +R   TR+AV P             ++LW SY  ALET PL+TKSITAG I  AAD   Q  + K ++  E +   +  R  R+ FFGF +QAPWNHF+Y+LLDGALPPT DPL+ TT +KV+IDQFVQAPIFTV+IF  LGLLEGK +  I +QL+ DYK+TM+ANW ++VPA  VN+AFCPP  RVLFLN VFF W+I+LS  ++K
Sbjct:   56 KRNSSTRLAVVPGIDDSVITIATSASDLWTSYNSALETDPLITKSITAGVILGAADFAGQALEAKTKESSE-ETSIDFGRAARFAFFGFILQAPWNHFYYLLLDGALPPTDDPLTATTGIKVVIDQFVQAPIFTVIIFVFLGLLEGKNIESINKQLENDYKNTMVANWKLWVPATAVNIAFCPPLFRVLFLNCVFFFWSIYLSLTLNK 262
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BLAST of mRNA_Ecto-sp13_S_contig7861.19132.1 vs. uniprot
Match: K0R1J6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R1J6_THAOC)

HSP 1 Score: 228 bits (582), Expect = 8.820e-68
Identity = 127/252 (50.40%), Postives = 158/252 (62.70%), Query Frame = 1 
Query:   10 MLLITRFITACTLLSCWSCQRCSGFVSSPLRSALLSPVGIKH-----HKHDNRSIRRRCGTRMAVAPTE-LWDSYLHALETAPLLTKSITAGCIFPAADAVAQRFDNKGQDDGELQQQWEIARTLRWLFFGFAVQAPWNHFFYVLLDGALPPTPDPLSTTTAVKVLIDQFVQAPIFTVVIFGVLGLLEGKAVADIREQLDQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSKG 747
            +L++   + ACT       + C+ F  + LR   L     K+     H H      R+  T +  A  E  W+SYL ALE  PLL KS+TAG I  AAD   Q   +   +D       +IAR  R+ FFGF +QAPWNH +Y+LLDGALPPT DP + TT VKVLIDQFVQAPIFTV+IF  LG LEGK   +I++QLD DYK TM+ANW ++VPA  VN+AFCPP LRVLFLN VFF W+IFLS  ++K 
Sbjct:   11 LLVLLVLVGACT-------RECAAFAPAGLRPEELQVRPQKNRQASGHPHPMLQRSRQPTTSLEFAGLEGAWESYLDALEADPLLVKSVTAGVILGAADLAGQAIQSTNDEDSGGV---DIARFARFAFFGFILQAPWNHAYYLLLDGALPPTEDPFTATTGVKVLIDQFVQAPIFTVIIFAFLGFLEGKTSEEIKQQLDDDYKDTMIANWKLWVPATAVNIAFCPPILRVLFLNCVFFFWSIFLSLKLNKA 252
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BLAST of mRNA_Ecto-sp13_S_contig7861.19132.1 vs. uniprot
Match: A0A7S4EG90_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EG90_9STRA)

HSP 1 Score: 226 bits (576), Expect = 2.890e-67
Identity = 111/194 (57.22%), Postives = 138/194 (71.13%), Query Frame = 1 
Query:  193 PTELWDSYLHALETAPLLTKSITAGCIFPAADAVAQRFDNKGQDDGELQQQW--EIARTLRWLFFGFAVQAPWNHFFYVLLDGALPPTPDPLSTTTAVKVLIDQFVQAPIFTVVIFGVLGLLEGKAVADIREQLDQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSKGPGEAVEE 768
            P + W +Y  ALET+PLL KS+TAG I  AAD   Q F+    DD         ++ART+R+ FFGF +QAPWNHF+Y LLDGA+PPT DP ++TTAVK +IDQFVQAPIFTV+IF  LG LEGK +  I++QLD DY  TM+ANW ++VPA V+NLAF PP LRVL+LN VFF W+IFLS  ++K      E 
Sbjct:   39 PQQAWTAYNDALETSPLLVKSVTAGVILGAADLAGQAFEGAQSDDESSSNDTGIDVARTVRFAFFGFILQAPWNHFYYTLLDGAIPPTVDPWTSTTAVKTVIDQFVQAPIFTVLIFAFLGFLEGKNLEAIKKQLDDDYADTMVANWKLWVPATVINLAFVPPILRVLYLNCVFFFWSIFLSLKLNKDGDNTTES 232
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BLAST of mRNA_Ecto-sp13_S_contig7861.19132.1 vs. uniprot
Match: A0A7S2XVN5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVN5_9STRA)

HSP 1 Score: 223 bits (569), Expect = 4.920e-66
Identity = 114/192 (59.38%), Postives = 139/192 (72.40%), Query Frame = 1 
Query:  196 TELWDSYLHALETAPLLTKSITAGCIFPAADAVAQRFDNKGQDDGELQQQWE-----IARTLRWLFFGFAVQAPWNHFFYVLLDGALPPTPDPLSTTTAVKVLIDQFVQAPIFTVVIFGVLGLLEGKAVADIREQLDQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSKGPGE 756
            + LWDSYL ALE+ PL+TKSITA  I PAAD  AQ  + + + D +     E      AR LR+  FG  +QAPWNHF+Y+ LD A+PPT D  +TTTAVKV IDQFVQAP+FTV+IF  LGLLEGKA++ IR QL  DY ST+ ANW ++VPAA  NLAFCPP+LRVLF N+VFF W+IF+S VV+K   E
Sbjct:   52 SSLWDSYLAALESQPLITKSITAAAILPAADFSAQLLEKQKETDEKSIDSKESDGIDAARVLRFSIFGLLLQAPWNHFYYLYLDSAIPPTEDAFTTTTAVKVFIDQFVQAPVFTVLIFVALGLLEGKALSSIRTQLKDDYWSTLQANWKLWVPAATFNLAFCPPQLRVLFTNLVFFFWSIFISLVVNKEKTE 243
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7861.19132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0V0_9PHAE1.150e-16894.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FP55_ECTSI1.050e-13297.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2W2E8_9STRA4.700e-7261.50Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
B8BXV6_THAPS1.710e-7061.70Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S1YNW0_9STRA1.080e-6961.66Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S3PZB9_9STRA1.550e-6861.58Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S0BVQ8_9STRA3.830e-6855.77Hypothetical protein n=2 Tax=Proboscia inermis Tax... [more]
K0R1J6_THAOC8.820e-6850.40Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S4EG90_9STRA2.890e-6757.22Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S2XVN5_9STRA4.920e-6659.38Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7861contigEcto-sp13_S_contig7861:734..5738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score392.9
Seed ortholog evalue1.1e-106
Seed eggNOG ortholog2880.D7FP55
Model size1613
KEGG koko:K13347,ko:K13348
KEGG Pathwayko04146,map04146
Hectar predicted targeting categorysignal peptide
GOsGO:0000302,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006979,GO:0008150,GO:0009987,GO:0030154,GO:0032502,GO:0033554,GO:0034599,GO:0034614,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043473,GO:0044424,GO:0044444,GO:0044464,GO:0048066,GO:0048869,GO:0050896,GO:0050931,GO:0050935,GO:0051716,GO:0070887,GO:1901700,GO:1901701
Exons5
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
EggNOG OGsKOG1944@1,KOG1944@2759
Ec32 ortholog descriptionMpv17/PMP22
Ec32 orthologEc-10_002560.1
Cds size765
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7861.19132.1prot_Ecto-sp13_S_contig7861.19132.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7861 743..4899 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464057.1789086-UTR-Ecto-sp13_S_contig7861:733..7421681464057.1789086-UTR-Ecto-sp13_S_contig7861:733..742Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7861 734..742 +
1681464057.2618952-UTR-Ecto-sp13_S_contig7861:4899..57381681464057.2618952-UTR-Ecto-sp13_S_contig7861:4899..5738Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7861 4900..5738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464057.1937108-CDS-Ecto-sp13_S_contig7861:742..9851681464057.1937108-CDS-Ecto-sp13_S_contig7861:742..985Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7861 743..985 +
1681464057.2038734-CDS-Ecto-sp13_S_contig7861:2280..24391681464057.2038734-CDS-Ecto-sp13_S_contig7861:2280..2439Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7861 2281..2439 +
1681464057.215199-CDS-Ecto-sp13_S_contig7861:3146..32721681464057.215199-CDS-Ecto-sp13_S_contig7861:3146..3272Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7861 3147..3272 +
1681464057.227195-CDS-Ecto-sp13_S_contig7861:3545..37041681464057.227195-CDS-Ecto-sp13_S_contig7861:3545..3704Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7861 3546..3704 +
1681464057.238989-CDS-Ecto-sp13_S_contig7861:4821..48991681464057.238989-CDS-Ecto-sp13_S_contig7861:4821..4899Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7861 4822..4899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7861.19132.1

>prot_Ecto-sp13_S_contig7861.19132.1 ID=prot_Ecto-sp13_S_contig7861.19132.1|Name=mRNA_Ecto-sp13_S_contig7861.19132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=255bp
MLLITRFITACTLLSCWSCQRCSGFVSSPLRSALLSPVGIKHHKHDNRSI
RRRCGTRMAVAPTELWDSYLHALETAPLLTKSITAGCIFPAADAVAQRFD
NKGQDDGELQQQWEIARTLRWLFFGFAVQAPWNHFFYVLLDGALPPTPDP
LSTTTAVKVLIDQFVQAPIFTVVIFGVLGLLEGKAVADIREQLDQDYKST
MLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSKGPGEA
VEEA*
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mRNA from alignment at Ecto-sp13_S_contig7861:734..5738+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7861.19132.1 ID=mRNA_Ecto-sp13_S_contig7861.19132.1|Name=mRNA_Ecto-sp13_S_contig7861.19132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5005bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7861:734..5738+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCTGGACCATGTTGCTTATCACAAGATTTATCACGGCTTGCACTTTGTT
GTCATGTTGGTCCTGTCAGCGGTGCTCCGGATTCGTTAGCTCGCCGCTTC
GGTCGGCACTGCTGTCACCTGTCGGAATTAAGCATCACAAACATGACAAT
CGCAGCATACGGCGAAGATGCGGAACGAGGATGGCGGTCGCTCCTACCGA
GCTGTGGGACTCGTACCTCCATGCTCTCGAGACAGCTCCGCTGTTAACCA
AGGTTAGGCGGATACCCTCCCCCCCATTTCTGCTGCCAATATGTAGTCAG
AGGTTGTCTGACGCGGAGTGCTGACTGGTATGTACGTAGCCAAACGACCC
GCCTCGTCTGCGGCTTCTCCGATCCTTCCCGGGTCTGTTGCACGATGTAG
AACCAGGGCGTGTATGATAGAGCAGTTTTGTCCTTGCCAAGTAGCGCTTG
GATTTCCCTGGGATATAGAAGTAAGTCAATACGAGCGAGGATACCGATCA
GTGCGAATAACAAGAACGTGGTCGGCGCAAACTGTGCTTCTCGCAGCTCT
CTGGACTTGGCAAGAGTGCGGCACGCGTCTTCTGCTGTTTCTACTTGTAC
TGTTGTTGTAGTCCTTGTCCCTCGCTGTCCAACGCACGAATACGCCCTGT
ACTCTGCCTAAGTGTAGACCCAGCGGTCATTAGCCTGTTCCCGTTGTTCG
CTAGACGCCGGTTATCACCGCCTCATGAAATGGGACAACGCTCGTTTTTG
GCGAACGAGAAGACATGGGAAAATACACGCCCCGACACGGCACATACATG
GCGAGGGTGTCGAGTGCGCATGGTTTACTTCTTTTTTTTCTATTATGACC
CAACGACTCCATCTCTATCTGAGAAAAGACTCTAAGATAGATTAGCAATG
AATCCATAGCGTCAGCGAAGGCTACTTTTTGCTAGCACGCGGTACCCGAA
AAAAAAATCTTGAAGGCATTCGGTCGTTAGGGCAATGCTTTGCACGCGTC
TGCGGAGTTGTGTCTGGGAGGCGCAGGCGTATGCTTGCCGGTGCGGTGTG
CAAAAAATAGAGGACGAGGTAAGAAGGAAGTGTGTAGGTGGTTTTCGAAC
ACAACCGCATCATGCTCTGTCTCAAAAGATTGTTTCGTTTAACCTTACGA
TGCAAGCCTGCTCGGTTTCCGCGAGTATATACCCCTACGCACCGCGCATC
CCTCACAATCGGTGCACAGCATAGACCAACCGTTGGAGGAGGACGACAGT
GCTGGATGCGAATCCCATACTGTGAGGGGGAGCGGTTGGCGAATCCTTAC
CGGAAATGCCGAATGGCCCAGCTCGAGCGGATTCTCTTTTAGGGCTTTTT
TCTTTACACGAGACGTTCGATGTTGGCAGCATTGCCTTCATGGATTTTTT
CCCGGTGGAGGGGGCCGGGGGGGGGGAGAGGGGCATCAGCTATCCTATCG
GCGGATAAAGGATGGGGTTGCACATCTCCCTGCAATAGATGTGGTACCCT
CTCTTCCTTTCTGTAAACGTCTGCCAAACCCGTTTATCCGTCGCCAGTCT
ATCACGGCGGGGTGCATCTTCCCCGCCGCCGACGCCGTGGCTCAGCGGTT
CGACAACAAGGGCCAGGACGACGGAGAGCTGCAGCAGCAATGGGAAATCG
CGCGGACGCTGCGATGGTTGTTCTTCGGCTTCGCGGTACAGGCGCCGTGG
AACCACGTGAGTTCGTTGGGGCAACAGGACTGCGTCGTATATACGTTCCA
AGGTTGTTGCTGCTGCGGTAGCTGTTATCGTTGCTTTCATGTTCTGCAGC
GTGGCGACCCGTACGATCCCTTGTCGCTACCGGTCCAAACCATATCCTAC
CTATCTCTCACACAGTTGGGGCTCCTTGCCTTTGAACCATGATACACCTC
GCAAACAGCTTGTTCGGGTACGAGTACTCCGAAGATATTCTTCGCAGTTT
TGCGAGGAGACCGTTCATATTTGTTTCGGTTGAGGGTGCGTTCTCAAGGC
CTTGGTCGTGGCCCCCGACGGGTTCAAGAGAAATTCGTGGTTGCCACATT
TTCTTTTCTGTGTGCGGACTTCGGACACGCGTGTGCGGGTGGACAATGGA
TAAATAGTACGCGGACCTTCTACTTGTTACCCTCTATCCCATCGACCCTA
TGCCTTGCGGTCGACTGTGTACAAGGAACTTCATGACATGTTGCGGCGTT
GCTCCAGACGTGGTTTTGGTACCCCAGCCAATACCCACCTCTCCCTACAC
CCTGTTGTGACTTCCTCTCAGTAGGCTTCTTCTCACCCCCTCCCCCCGGT
GAAAGACCCCCTTCCGCGTCGCTGGTCTTTGTTCCTTACCATATCTGTCA
AAAGTAACCACCCCGGTTCTGTGTGCTCTTGTGTGTATGTCGCACGCGCA
CTTGTCTATTCAGTTCTTTTACGTCCTCCTGGACGGAGCGTTGCCCCCGA
CCCCCGACCCCCTTTCGACGACGACGGCTGTGAAGGTTTTGATCGACCAG
TTCGTGCAAGCGCCAATCTTTACGGTGGTCATCTTTGGGGTACGTGTCAG
CGGACTTCCTCTGCGAGTTTCCGAAATCTCTCAAGCACGGCTAGGTGGCT
GCTGTGGTTGTAGTTTGTCAGAGGAAATCGCTCTGTCGAGTGTTTCGTGT
CTTTACCTTCGTCGTTGATGTTTGACTGCCTTACAAACCTATGCGGCGCC
TCTTAGGGCGATAATCGCGCAAGTGTCCGACTCCCGCGGTTCGATCCCAC
CGCACGGCTCACTCCATTCCCCTTTTGACCCCCCTCTTCGGCCGTGTCTC
GGCTACTTGCAGGTCCTCGGCCTTCTTGAAGGCAAGGCTGTGGCGGATAT
CCGGGAGCAGCTGGACCAGGACTACAAGAGCACGATGCTGGCAAACTGGG
GAGTGTTCGTCCCCGCGGCTGTCGTGAACCTCGCCTTCTGCCCCCCGGAG
CTGCGAGTCCTCTTCCTGAACGTGAGTTTGCTGTCGCCAGAATGTTTTGC
TGATTTGTTGCTTGGATGTGCCGTCGTCTTCAGTTGCTGGTTCGCGTGTT
GGAGGTATATCCCTTGCGGGTTGCGACGCGATGATGTGATCTGTGGTCGT
GCGCTCGCCCGTCGCATCGTAAGGTTGTTATGGCAGCTTGCCCCGGTCAC
CCGTGCTGGTCCTCTAAGAGATCCTCGGTGTCTTTATCTAATGTGGCGGT
GTGGGGAGTACAGCGAGATGAAGATTCGCACACAATCAATCAAGAACTTG
TGCAAAGACGCGTGCGTGCATTAATCTTGTTGCTTCCTTGCGACCCTGAA
TTTATCAAGAAGAAAGCGGGAAGCAAAGACGGACAACCATCGGTTAATGC
TCAATCTGATGTATAGAGTACAGACGAGAATATTGTTCGGTGCTGCGTAC
AGAAGCACGCTCGGTTATTTTCTTGTTGCATACTATTGCGTTCGATGTCA
CACGCATTATCTGCGGTTGAACGGATCAGCGACAGATGGTGGTGATGTGT
GTACCGAAAAGGAATTACAAACCAACATCAACGCATACTTGTGCGTACGT
ATATCACACAACGCACGCTCCCTACTGCTATGATGCCATGCTGTAACAAT
CGCGACGGCCCAACGCTGCTGAACAGCACACCACGGGCGCGACACGATCG
CTCATCCCAGTTCAAACGACGGGCACGACCACCCGTCCTAGTAAAAAGCG
AACTTCGTGCCCGCTCGTGTGTGGTACACCGAGAGCTACGGAGTATTGGT
GAAGCACAAATAGCGTCAAAGGAGTCGCCGACAAGCACATGCGCGCGCAT
ATGTACAAGAACAAATTAATATTTCTGTCTAACCGCGGTGGAATAATCTA
CCGCGGGGCACGTTGTATTGCAATCGACAGAATATGGTGCAAAGGTCAGA
CTCCTACCACGACATACCTACACGCGCCCACGCGGCGCGCTGATATCCGA
GGCGGCTTCGATATCAAAATGTATTTTGGAAGAGCTTGTGTCTGGACTTG
TGAGTTGAAACGGCCCCCATCCTCTTGCTTCTCCTCCACTCGTTCCTTGC
TGCCCCCGCCATGGCCGTCGCCACCGTCGCCGGTGCAGGTGGTGTTCTTT
GGGTGGACGATATTCCTCAGTACGGTCGTTAGCAAGGGCCCAGGGGAAGC
AGTAGAAGAAGCCTAGACTTCCCGTTTAGTCTTGAGATGTTAGTAGATTG
CGCCGGAGGGTGGAGCGCTGCGATGGAGCGCGGCAGAAGGGCGACGGCAA
AGGCGAAAGGCGCGGCAGAGAACGCCCGTACAATACAATGGGGGCGGACG
CCTTTTTGGGCTGCCGACGCAGGTGGGGGGACATCCCTCAAGCGTGACGT
TTTGTCGAGAGGCAGCAATGCGCGAGTGTGCTACTGAGATAGGGTGAGGG
GCGCGCTATTAGTGGGAGCCGGATTTCAGTGGTGAAAATACGGTCTATGC
TTGTACCGAGTAAGACTATCATCATGAGGGCGCGGTTCGCCCTTCGTCTC
CAGCCTGAACTCTGCTGGACGGTTGGATGGACGGAAGCTCCGGGCGTGTT
TGGGCAGAGTGGTTTGTGGGACCCTCTTCCACTCGCGGCGCGCGGGAGGG
AGAGAGACAGGAAGGGGGGGCTTTTGGTTCGTGTGCCTTGCTGGATCGGC
TGTACTGCTCACAATACACTAGCCGAAGCACGCAAGGGCGCATGAGTGTC
TTCTTTCTATTTGTTCATTGTACGCCATGCACGCTCCAAGCTTTCCCACA
CTGCTCTATCCAGAAGGTGTGTTGGGAACCCATCACTTCAGAACGGTGGT
CAACGGAGCCGTCTCCTCCGTCGACGGGCGGTAGGATCCTCCAACAGAAG
CACCAGACGACACGAGGCTGAGCTCGTCGCGGTGCCATATTCCCGCCACA
GGGTCGCCGTCACCGGGCGCTCCGCCGGGGGAAGCGTAGAAGACACCCTC
CCCGTGTCGCAGCCCGTCGAGCCAGAGTCCTTCGTACCTGCTGCCCGAGG
CGTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7861:734..5738+

>mRNA_Ecto-sp13_S_contig7861.19132.1 ID=mRNA_Ecto-sp13_S_contig7861.19132.1|Name=mRNA_Ecto-sp13_S_contig7861.19132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=765bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7861:734..5738+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGCTTATCACAAGATTTATCACGGCTTGCACTTTGTTGTCATGTTG
GTCCTGTCAGCGGTGCTCCGGATTCGTTAGCTCGCCGCTTCGGTCGGCAC
TGCTGTCACCTGTCGGAATTAAGCATCACAAACATGACAATCGCAGCATA
CGGCGAAGATGCGGAACGAGGATGGCGGTCGCTCCTACCGAGCTGTGGGA
CTCGTACCTCCATGCTCTCGAGACAGCTCCGCTGTTAACCAAGTCTATCA
CGGCGGGGTGCATCTTCCCCGCCGCCGACGCCGTGGCTCAGCGGTTCGAC
AACAAGGGCCAGGACGACGGAGAGCTGCAGCAGCAATGGGAAATCGCGCG
GACGCTGCGATGGTTGTTCTTCGGCTTCGCGGTACAGGCGCCGTGGAACC
ACTTCTTTTACGTCCTCCTGGACGGAGCGTTGCCCCCGACCCCCGACCCC
CTTTCGACGACGACGGCTGTGAAGGTTTTGATCGACCAGTTCGTGCAAGC
GCCAATCTTTACGGTGGTCATCTTTGGGGTCCTCGGCCTTCTTGAAGGCA
AGGCTGTGGCGGATATCCGGGAGCAGCTGGACCAGGACTACAAGAGCACG
ATGCTGGCAAACTGGGGAGTGTTCGTCCCCGCGGCTGTCGTGAACCTCGC
CTTCTGCCCCCCGGAGCTGCGAGTCCTCTTCCTGAACGTGGTGTTCTTTG
GGTGGACGATATTCCTCAGTACGGTCGTTAGCAAGGGCCCAGGGGAAGCA
GTAGAAGAAGCCTAG
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