mRNA_Ecto-sp13_S_contig78432.19105.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig78432.19105.1
Unique NamemRNA_Ecto-sp13_S_contig78432.19105.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig78432.19105.1 vs. uniprot
Match: D7FHR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHR3_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 6.850e-14
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 MLASVVFPGFTINRWVAFVEYLLQASDLESQVSA 102
            MLASVVFPGFTINRWVAFVEYLLQASDLESQ  A
Sbjct:    1 MLASVVFPGFTINRWVAFVEYLLQASDLESQPRA 34
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BLAST of mRNA_Ecto-sp13_S_contig78432.19105.1 vs. uniprot
Match: A0A6H5KVT2_9PHAE (Mitochondrial fission process protein 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT2_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 8.150e-12
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1 
Query:    1 MLASVVFPGFTINRWVAFVEYLLQASDLESQ 93
            MLASVVFPGFTINRWVAFVEYLLQASDLESQ
Sbjct:  185 MLASVVFPGFTINRWVAFVEYLLQASDLESQ 215
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig78432.19105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHR3_ECTSI6.850e-1494.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVT2_9PHAE8.150e-12100.00Mitochondrial fission process protein 1 n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig78432contigEcto-sp13_S_contig78432:526..627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size102
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_006480.1
Cds size102
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464055.251692-CDS-Ecto-sp13_S_contig78432:525..6271681464055.251692-CDS-Ecto-sp13_S_contig78432:525..627Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig78432 526..627 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig78432.19105.1prot_Ecto-sp13_S_contig78432.19105.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig78432 526..627 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig78432.19105.1

>prot_Ecto-sp13_S_contig78432.19105.1 ID=prot_Ecto-sp13_S_contig78432.19105.1|Name=mRNA_Ecto-sp13_S_contig78432.19105.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=34bp
MLASVVFPGFTINRWVAFVEYLLQASDLESQVSA
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mRNA from alignment at Ecto-sp13_S_contig78432:526..627-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig78432.19105.1 ID=mRNA_Ecto-sp13_S_contig78432.19105.1|Name=mRNA_Ecto-sp13_S_contig78432.19105.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78432:526..627- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGCATCGGTAGTGTTCCCGGGCTTCACGATCAACCGTTGGGTGGC
CTTCGTAGAGTACCTGCTTCAAGCCTCCGACCTGGAGTCGCAGGTGAGCG
CT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig78432:526..627-

>mRNA_Ecto-sp13_S_contig78432.19105.1 ID=mRNA_Ecto-sp13_S_contig78432.19105.1|Name=mRNA_Ecto-sp13_S_contig78432.19105.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78432:526..627- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGCATCGGTAGTGTTCCCGGGCTTCACGATCAACCGTTGGGTGGC
CTTCGTAGAGTACCTGCTTCAAGCCTCCGACCTGGAGTCGCAGGTGAGCG
CT
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