mRNA_Ecto-sp13_S_contig78273.19079.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig78273.19079.1
Unique NamemRNA_Ecto-sp13_S_contig78273.19079.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig78273.19079.1 vs. uniprot
Match: A0A6H5L776_9PHAE (GT13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L776_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 4.940e-17
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 PEAYWDDWLRDPRRRKGRQFIRPEVCRTFHFGQK 102
            PEAYWDDWLRDPRRRKGRQFIRPEVCRTFHFGQK
Sbjct:  275 PEAYWDDWLRDPRRRKGRQFIRPEVCRTFHFGQK 308
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BLAST of mRNA_Ecto-sp13_S_contig78273.19079.1 vs. uniprot
Match: D7FXV4_ECTSI (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, family GT13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV4_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.280e-16
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 PEAYWDDWLRDPRRRKGRQFIRPEVCRTFHFGQK 102
            PEAYWDDWLRDPRRRKGRQFIRPEVCRT+HFGQK
Sbjct:  373 PEAYWDDWLRDPRRRKGRQFIRPEVCRTYHFGQK 406
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BLAST of mRNA_Ecto-sp13_S_contig78273.19079.1 vs. uniprot
Match: A0A7S2XX81_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX81_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.170e-11
Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:    1 PEAYWDDWLRDPRRRKGRQFIRPEVCRTFHFGQ 99
            P  YWDDW+R+P +RKGR+ IRPE+CRTFHFG+
Sbjct:   93 PRGYWDDWIREPPQRKGRETIRPEICRTFHFGE 125
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BLAST of mRNA_Ecto-sp13_S_contig78273.19079.1 vs. uniprot
Match: A0A7S1BVZ6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BVZ6_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 5.770e-11
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    1 PEAYWDDWLRDPRRRKGRQFIRPEVCRTFHFGQ 99
            P  YWDDWLRDP  RKGRQ IRPEVCR++HFG+
Sbjct:   97 PNGYWDDWLRDPDIRKGRQVIRPEVCRSYHFGR 129
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BLAST of mRNA_Ecto-sp13_S_contig78273.19079.1 vs. uniprot
Match: A0A482SQF6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SQF6_9ARCH)

HSP 1 Score: 63.5 bits (153), Expect = 8.610e-11
Identity = 24/32 (75.00%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:    1 PEAYWDDWLRDPRRRKGRQFIRPEVCRTFHFG 96
            P+AYWDDWLR+P +R+ RQFIRPEVCRT H+G
Sbjct:  251 PKAYWDDWLREPAQRQSRQFIRPEVCRTLHYG 282
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BLAST of mRNA_Ecto-sp13_S_contig78273.19079.1 vs. uniprot
Match: A0A388LUK1_CHABU (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LUK1_CHABU)

HSP 1 Score: 63.5 bits (153), Expect = 8.690e-11
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:    1 PEAYWDDWLRDPRRRKGRQFIRPEVCRTFHFGQ 99
            P AYWDDWLR P+ RKGRQ IRPEVCRT++FG+
Sbjct:  322 PAAYWDDWLRSPQNRKGRQSIRPEVCRTYNFGE 354
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BLAST of mRNA_Ecto-sp13_S_contig78273.19079.1 vs. uniprot
Match: A0A7S1SHF8_9CHLO (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SHF8_9CHLO)

HSP 1 Score: 62.8 bits (151), Expect = 1.620e-10
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 PEAYWDDWLRDPRRRKGRQFIRPEVCRTFHFGQK 102
            P AYWDDW+R  + RKGRQ IRPEVCRTF+FG+K
Sbjct:  309 PRAYWDDWMRQTQHRKGRQSIRPEVCRTFNFGEK 342
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BLAST of mRNA_Ecto-sp13_S_contig78273.19079.1 vs. uniprot
Match: A0A7S3XJB6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJB6_HETAK)

HSP 1 Score: 62.4 bits (150), Expect = 2.030e-10
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 PEAYWDDWLRDPRRRKGRQFIRPEVCRTFHFGQK 102
            P+ YWDDWLR+P +R+GR  +RPE+CRTFHFG K
Sbjct:  190 PKGYWDDWLREPAQRRGRHTLRPEICRTFHFGIK 223
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BLAST of mRNA_Ecto-sp13_S_contig78273.19079.1 vs. uniprot
Match: A0A5J5BX56_9ASTE (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5BX56_9ASTE)

HSP 1 Score: 62.4 bits (150), Expect = 2.220e-10
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:    1 PEAYWDDWLRDPRRRKGRQFIRPEVCRTFHFGQ 99
            P+AYWDDWLR    RKGRQFIRPEVCRT++FG+
Sbjct:  282 PKAYWDDWLRLKENRKGRQFIRPEVCRTYNFGE 314
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BLAST of mRNA_Ecto-sp13_S_contig78273.19079.1 vs. uniprot
Match: A0A1Q3ALD2_CEPFO (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3ALD2_CEPFO)

HSP 1 Score: 62.4 bits (150), Expect = 2.220e-10
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:    1 PEAYWDDWLRDPRRRKGRQFIRPEVCRTFHFGQ 99
            P+AYWDDWLR    RKGRQFIRPEVCRT++FG+
Sbjct:  282 PKAYWDDWLRLKENRKGRQFIRPEVCRTYNFGE 314
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig78273.19079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L776_9PHAE4.940e-17100.00GT13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FXV4_ECTSI1.280e-1697.06Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
A0A7S2XX81_9STRA3.170e-1169.70Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S1BVZ6_9STRA5.770e-1175.76Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A482SQF6_9ARCH8.610e-1175.00Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A388LUK1_CHABU8.690e-1175.76Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
A0A7S1SHF8_9CHLO1.620e-1073.53Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
A0A7S3XJB6_HETAK2.030e-1067.65Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A5J5BX56_9ASTE2.220e-1075.76Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
A0A1Q3ALD2_CEPFO2.220e-1075.76Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig78273contigEcto-sp13_S_contig78273:529..630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score80.5
Seed ortholog evalue1.7e-13
Seed eggNOG ortholog2880.D7FXV4
Preferred nameMGAT1
Model size102
KEGG koko:K00726
KEGG ReactionR05983
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000139,GO:0001701,GO:0002252,GO:0002376,GO:0003002,GO:0003674,GO:0003824,GO:0003827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005797,GO:0005975,GO:0006040,GO:0006047,GO:0006049,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007568,GO:0007610,GO:0007626,GO:0008150,GO:0008152,GO:0008194,GO:0008340,GO:0008344,GO:0008375,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009227,GO:0009790,GO:0009792,GO:0009987,GO:0010259,GO:0012505,GO:0016020,GO:0016021,GO:0016319,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019439,GO:0019538,GO:0030534,GO:0031090,GO:0031224,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0034641,GO:0034645,GO:0034655,GO:0034656,GO:0035010,GO:0035282,GO:0035283,GO:0035284,GO:0036211,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044270,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046348,GO:0046483,GO:0046700,GO:0048471,GO:0048513,GO:0048731,GO:0048856,GO:0055086,GO:0060322,GO:0070085,GO:0071704,GO:0098588,GO:0098791,GO:0140096,GO:0140103,GO:1901135,GO:1901136,GO:1901137,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576
Exons1
EggNOG free text desc.alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity
EggNOG OGsKOG1413@1,KOG1413@2759
EC2.4.1.101
Cds size102
COG Functional cat.S
CAZyGT13
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464053.23394-CDS-Ecto-sp13_S_contig78273:528..6301681464053.23394-CDS-Ecto-sp13_S_contig78273:528..630Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig78273 529..630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig78273.19079.1prot_Ecto-sp13_S_contig78273.19079.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig78273 529..630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig78273.19079.1

>prot_Ecto-sp13_S_contig78273.19079.1 ID=prot_Ecto-sp13_S_contig78273.19079.1|Name=mRNA_Ecto-sp13_S_contig78273.19079.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=34bp
PEAYWDDWLRDPRRRKGRQFIRPEVCRTFHFGQK
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mRNA from alignment at Ecto-sp13_S_contig78273:529..630-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig78273.19079.1 ID=mRNA_Ecto-sp13_S_contig78273.19079.1|Name=mRNA_Ecto-sp13_S_contig78273.19079.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78273:529..630- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGAGGCCTACTGGGACGACTGGCTTAGAGACCCGCGGAGACGGAAGGG
GCGTCAGTTCATCCGCCCGGAAGTCTGTCGGACCTTCCACTTCGGCCAGA
AG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig78273:529..630-

>mRNA_Ecto-sp13_S_contig78273.19079.1 ID=mRNA_Ecto-sp13_S_contig78273.19079.1|Name=mRNA_Ecto-sp13_S_contig78273.19079.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78273:529..630- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGAGGCCTACTGGGACGACTGGCTTAGAGACCCGCGGAGACGGAAGGG
GCGTCAGTTCATCCGCCCGGAAGTCTGTCGGACCTTCCACTTCGGCCAGA
AG
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