mRNA_Ecto-sp13_S_contig78127.19067.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig78127.19067.1
Unique NamemRNA_Ecto-sp13_S_contig78127.19067.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78127.19067.1 vs. uniprot
Match: A0A6H5KKH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKH3_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.290e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:    1 VRAFKSEIDALTDRSRFAEGSFLALYKLLREAPDP 105
            VRAFKSEIDALTDRSRFAEGSFLALYKLLREAPDP
Sbjct:   93 VRAFKSEIDALTDRSRFAEGSFLALYKLLREAPDP 127
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78127.19067.1 vs. uniprot
Match: D8LC71_ECTSI (Protein CASP n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC71_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 3.270e-13
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:    1 VRAFKSEIDALTDRSRFAEGSFLALYKLLREAPDP 105
            VRAFKSEID+LTDRSRFAEGSFLALYKLLREAPDP
Sbjct:   93 VRAFKSEIDSLTDRSRFAEGSFLALYKLLREAPDP 127
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78127.19067.1 vs. uniprot
Match: A0A836CBY3_9STRA (Protein CASP n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBY3_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.050e-9
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:    1 VRAFKSEIDALTDRSRFAEGSFLALYKLLREAPDP 105
            VRAFKSE+DALT R+R  E +FLALYKLLREAPDP
Sbjct:  102 VRAFKSEVDALTKRARHGEAAFLALYKLLREAPDP 136
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78127.19067.1 vs. uniprot
Match: A0A1S8VPG1_9FUNG (Protein CASP n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VPG1_9FUNG)

HSP 1 Score: 53.9 bits (128), Expect = 2.250e-7
Identity = 23/35 (65.71%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 VRAFKSEIDALTDRSRFAEGSFLALYKLLREAPDP 105
            ++A++SEID++T RS+FAE SFL+LYKLL +APDP
Sbjct:   68 LKAYQSEIDSMTKRSKFAEASFLSLYKLLSDAPDP 102
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78127.19067.1 vs. uniprot
Match: A0A2G5B3E4_COERN (Uncharacterized protein (Fragment) n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5B3E4_COERN)

HSP 1 Score: 49.7 bits (117), Expect = 1.640e-6
Identity = 23/35 (65.71%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 VRAFKSEIDALTDRSRFAEGSFLALYKLLREAPDP 105
            +RA+++EIDALT R +FAE SFL L+K L EAPDP
Sbjct:   45 LRAYQNEIDALTKRMKFAETSFLKLFKSLSEAPDP 79
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78127.19067.1 vs. uniprot
Match: A0A1Y2FZU9_9BASI (Protein CASP n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2FZU9_9BASI)

HSP 1 Score: 51.2 bits (121), Expect = 2.010e-6
Identity = 23/35 (65.71%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 VRAFKSEIDALTDRSRFAEGSFLALYKLLREAPDP 105
            ++A++ EIDALT RS+ AE SFL++YKLL EAPDP
Sbjct:   70 LKAYQGEIDALTKRSKSAENSFLSVYKLLAEAPDP 104
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78127.19067.1 vs. uniprot
Match: A0A166JDS2_9AGAM (Uncharacterized protein n=1 Tax=Peniophora sp. CONT TaxID=1314672 RepID=A0A166JDS2_9AGAM)

HSP 1 Score: 50.1 bits (118), Expect = 2.600e-6
Identity = 21/35 (60.00%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:    1 VRAFKSEIDALTDRSRFAEGSFLALYKLLREAPDP 105
            ++A+++EID+LT RS+FAE +FL +YK+L EAPDP
Sbjct:   71 LKAYQTEIDSLTKRSKFAENAFLDVYKVLAEAPDP 105
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78127.19067.1 vs. uniprot
Match: R7Q7H9_CHOCR (Protein CASP n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q7H9_CHOCR)

HSP 1 Score: 50.8 bits (120), Expect = 2.750e-6
Identity = 22/35 (62.86%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 VRAFKSEIDALTDRSRFAEGSFLALYKLLREAPDP 105
            +R ++SEID LT+R++ AEGSFLALY+ L +APDP
Sbjct:   12 LRLYQSEIDTLTNRAKAAEGSFLALYRALEDAPDP 46
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78127.19067.1 vs. uniprot
Match: A0A0D7BXR6_9AGAR (Protein CASP n=1 Tax=Cylindrobasidium torrendii FP15055 ss-10 TaxID=1314674 RepID=A0A0D7BXR6_9AGAR)

HSP 1 Score: 50.4 bits (119), Expect = 3.760e-6
Identity = 23/35 (65.71%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 VRAFKSEIDALTDRSRFAEGSFLALYKLLREAPDP 105
            ++A++SEID+LT RSR AE +FL LYK+L EAPDP
Sbjct:   68 LKAYQSEIDSLTKRSRTAENAFLDLYKVLAEAPDP 102
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78127.19067.1 vs. uniprot
Match: A0A5C3QMT0_9AGAR (Protein CASP n=1 Tax=Pterula gracilis TaxID=1884261 RepID=A0A5C3QMT0_9AGAR)

HSP 1 Score: 50.1 bits (118), Expect = 5.140e-6
Identity = 21/35 (60.00%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:    1 VRAFKSEIDALTDRSRFAEGSFLALYKLLREAPDP 105
            ++A++SEIDALT R++FAE +FL +YK+L +APDP
Sbjct:   68 LKAYQSEIDALTKRAKFAENAFLNVYKVLSDAPDP 102
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig78127.19067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKH3_9PHAE1.290e-13100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LC71_ECTSI3.270e-1397.14Protein CASP n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A836CBY3_9STRA2.050e-980.00Protein CASP n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A1S8VPG1_9FUNG2.250e-765.71Protein CASP n=1 Tax=Batrachochytrium salamandrivo... [more]
A0A2G5B3E4_COERN1.640e-665.71Uncharacterized protein (Fragment) n=1 Tax=Coemans... [more]
A0A1Y2FZU9_9BASI2.010e-665.71Protein CASP n=1 Tax=Leucosporidium creatinivorum ... [more]
A0A166JDS2_9AGAM2.600e-660.00Uncharacterized protein n=1 Tax=Peniophora sp. CON... [more]
R7Q7H9_CHOCR2.750e-662.86Protein CASP n=1 Tax=Chondrus crispus TaxID=2769 R... [more]
A0A0D7BXR6_9AGAR3.760e-665.71Protein CASP n=1 Tax=Cylindrobasidium torrendii FP... [more]
A0A5C3QMT0_9AGAR5.140e-660.00Protein CASP n=1 Tax=Pterula gracilis TaxID=188426... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig78127contigEcto-sp13_S_contig78127:507..611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score70.9
Seed ortholog evalue1.4e-10
Seed eggNOG ortholog2880.D8LC71
Model size105
KEGG koko:K09313
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006810,GO:0008150,GO:0012505,GO:0016020,GO:0016192,GO:0031090,GO:0031984,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0048193,GO:0051179,GO:0051234,GO:0098588,GO:0098791
Exons1
EggNOG free text desc.intra-Golgi vesicle-mediated transport
EggNOG OGsKOG0963@1,KOG0963@2759
Cds size105
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464052.041523-CDS-Ecto-sp13_S_contig78127:506..6111681464052.041523-CDS-Ecto-sp13_S_contig78127:506..611Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig78127 507..611 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig78127.19067.1prot_Ecto-sp13_S_contig78127.19067.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig78127 507..611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig78127.19067.1

>prot_Ecto-sp13_S_contig78127.19067.1 ID=prot_Ecto-sp13_S_contig78127.19067.1|Name=mRNA_Ecto-sp13_S_contig78127.19067.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=35bp
VRAFKSEIDALTDRSRFAEGSFLALYKLLREAPDP
back to top

mRNA from alignment at Ecto-sp13_S_contig78127:507..611+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig78127.19067.1 ID=mRNA_Ecto-sp13_S_contig78127.19067.1|Name=mRNA_Ecto-sp13_S_contig78127.19067.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78127:507..611+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCGTGCGTTTAAGAGCGAGATCGATGCGCTGACCGATAGGAGCCGTTT
CGCCGAGGGGTCGTTCTTAGCCCTTTATAAGCTGCTTCGGGAAGCTCCCG
ACCCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig78127:507..611+

>mRNA_Ecto-sp13_S_contig78127.19067.1 ID=mRNA_Ecto-sp13_S_contig78127.19067.1|Name=mRNA_Ecto-sp13_S_contig78127.19067.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78127:507..611+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCGTGCGTTTAAGAGCGAGATCGATGCGCTGACCGATAGGAGCCGTTT
CGCCGAGGGGTCGTTCTTAGCCCTTTATAAGCTGCTTCGGGAAGCTCCCG
ACCCG
back to top