mRNA_Ecto-sp13_S_contig1016.191.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1016.191.1
Unique NamemRNA_Ecto-sp13_S_contig1016.191.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1016.191.1 vs. uniprot
Match: D7G1F2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1F2_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 3.850e-32
Identity = 68/74 (91.89%), Postives = 70/74 (94.59%), Query Frame = 1 
Query:    1 MASTLGVLDVLSKLREESERASTALTAQQETNRTLLQKCIEAETQSGRTDEAKEALQHRSVQLEQWHRNAETGR 222
            MASTLGVLDVLSKLREESERASTALTAQQETNRTLLQKCIEAET+SGRTDEAKEALQ R VQLEQ H +AETGR
Sbjct:    1 MASTLGVLDVLSKLREESERASTALTAQQETNRTLLQKCIEAETESGRTDEAKEALQLRKVQLEQGHEDAETGR 74
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1016.191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1F2_ECTSI3.850e-3291.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1016contigEcto-sp13_S_contig1016:18623..19796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size222
Hectar predicted targeting categoryother localisation
Exons3
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462512.0616577-CDS-Ecto-sp13_S_contig1016:18622..187091681462512.0616577-CDS-Ecto-sp13_S_contig1016:18622..18709Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1016 18623..18709 +
1681462512.070464-CDS-Ecto-sp13_S_contig1016:18879..189721681462512.070464-CDS-Ecto-sp13_S_contig1016:18879..18972Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1016 18880..18972 +
1681462512.0841336-CDS-Ecto-sp13_S_contig1016:19754..197961681462512.0841336-CDS-Ecto-sp13_S_contig1016:19754..19796Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1016 19755..19796 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1016.191.1prot_Ecto-sp13_S_contig1016.191.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1016 18623..19796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1016.191.1

>prot_Ecto-sp13_S_contig1016.191.1 ID=prot_Ecto-sp13_S_contig1016.191.1|Name=mRNA_Ecto-sp13_S_contig1016.191.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
MASTLGVLDVLSKLREESERASTALTAQQETNRTLLQKCIEAETQSGRTD
EAKEALQHRSVQLEQWHRNAETGR
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mRNA from alignment at Ecto-sp13_S_contig1016:18623..19796+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1016.191.1 ID=mRNA_Ecto-sp13_S_contig1016.191.1|Name=mRNA_Ecto-sp13_S_contig1016.191.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1016:18623..19796+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTTCCACTCTTGGCGTCCTTGACGTCCTAAGCAAGCTTCGTGAGGA
ATCAGAGAGAGCTTCCACAGCCTTGACGGCCCAGCAGGTGATATATTGAC
AATTTCCCGATGCGTGGATAACATTTCGACTATTGTACATCATTGAGGTT
CGTGAGAGTTGTTCAAGAGAGAGACAAGATGGACCCTCAAGTCTGATTGA
CCCCGAACCGATCATCGTCTTCCCCTGCTAACAAGCAACATATCGCGTAC
TTCCCAGGAAACCAATCGAACGCTTCTCCAGAAATGTATCGAGGCCGAGA
CGCAAAGCGGCCGCACAGACGAAGCCAAAGAAGCGCTCCAACATCGAAGT
GTGAGATGTAAAACTATGACTACTGTAGAACAGATTCACCAATCAACTCA
TGCCCGCTCTATCTCAGATTTGAGCGGTATTCCACGACTAGATGTGAAGC
TGTATTTCACACACGCAAGCATACAAACAGGAGGGACACCGGGAGGATCT
TTCCACACAGCATCATTTCACAACAGCCCCTTAGTGAAATTATACTGCGA
GCCACAACCAAGACCACCCAGATCCACGGCCCTTTCACGCAAAGAATTCA
TTCTTCGGCTGTGACTTGCTGGAGAGTGAGTGGGCCGCAGGGCACACGTT
GTCCGTTTCCAGCGGTATCGTGCGAATGAATTGAGGTACCGTATACGACA
CAAGATAGGACACACCCTGTACCAATTTTCAAAGCTCGATCTTTCCACGA
CGAAACGGTACGTTTCCGGAGAGGTCTTGACCAGGCTGCTTCAACGCCGA
TATTTTCGGCGCTACTCTTTCTGCTGTCGATGAAATCGAACTTTGAAAAA
CTGCCCATGGGGTGTGTTGTCTTGTGTTGCATGCAGAAATAGGTTGCAGT
GTTTGGGCCACGTATCAATGTCATCTTTCTTTGATGGGCCTGTTGAACCC
AGCAGCCATTGTCGACCACGCAAGCTACCCGGACGTACAATTCCGATACG
ATGTGTGCGGCAGAAGGCGTGCGACTCATTGCATCAATGAACACGACCAT
CCACGATGCGCAGCAACACTCATTCTGCTCATTGTAGCGGTCGACCAAAG
CTTTGACCACGTCCTCTTTCTTGCTGCTCTAGGTGCAGCTTGAGCAGTGG
CATAGGAACGCAGAGACTGGGCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1016:18623..19796+

>mRNA_Ecto-sp13_S_contig1016.191.1 ID=mRNA_Ecto-sp13_S_contig1016.191.1|Name=mRNA_Ecto-sp13_S_contig1016.191.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1016:18623..19796+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTTCCACTCTTGGCGTCCTTGACGTCCTAAGCAAGCTTCGTGAGGA
ATCAGAGAGAGCTTCCACAGCCTTGACGGCCCAGCAGGAAACCAATCGAA
CGCTTCTCCAGAAATGTATCGAGGCCGAGACGCAAAGCGGCCGCACAGAC
GAAGCCAAAGAAGCGCTCCAACATCGAAGTGTGCAGCTTGAGCAGTGGCA
TAGGAACGCAGAGACTGGGCGT
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