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Homology
BLAST of mRNA_Ecto-sp13_S_contig12269.1903.1 vs. uniprot
Match: D8LNZ7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNZ7_ECTSI) HSP 1 Score: 801 bits (2069), Expect = 3.230e-284 Identity = 543/599 (90.65%), Postives = 559/599 (93.32%), Query Frame = 1
Query: 1 QLATDLSRAESEVARLKEETRQARRALDERDDMVEQLKASKANTNQRYTALLQSHEEANKELALLRTQKLDSSSDSGSGSVERLKATVENLETNNELLREERGSLQTRLAKRDAAVSAMKADLVAAAQRDDALRQETDRLREELDAAAAAAAKAGAQAEWDLDREVLEARIGELETQAASSGSRCVELVAERDLLAEESARREKEHASTVASLRSEMQGLHRRTTADLGDWRQRYRQEVGAKKALEGQLERLVGASESVTRVIEKHAILEASLQEAYGLLSQAVLAEEXXXXXXXXXAARVVEGVLEHLLGRVFQATATSGDEEE-GEDEEGRKEREADRRLSKEASDNLGEELEKLTADMEALRSFGLDEAHTFLEQAKSLETELEAVREKHAASVSDLEAARAHSEQEVERLAGMLERGQGEREELQLRLETAANELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERRAYGQKAEAXXXXXXXXXXXXXXXXXXASALKAKAAAREASSPPTVSVTDWEAKQQELEEMEARLSAVVSKNQELERKVQTVKAEGQEASLGSEERQAQVAALEA 1794
QLATDLSRAESE+ARLKEE RQARRALDER++MVEQLKASKANT QRYTALLQSHEEANKEL LLRTQKLDSS DSGSG VE+L+ATVENLETNNELLREERGSLQTRLAKRDAAVSAMKADL AA QRDDALRQ+ DRLREELDAAAAA+ KAGAQA+WDLD+E LEARIGELETQAASSG RCVELVAERDLLAEESARREKEHASTVASLRSEMQGLHRRTTADLGDWRQRYRQEVGAK+ALEGQLERLV ASESVTRVIEKHA+LEASLQEAYGLLSQAVLAEE XXXXXXXAARVVEGVLEHLLGRVFQATATSGDEEE GEDEEGRKEREADRRLSKEASDNLGEELEKLTADMEALRSFGLDEAHTFLEQAKSLETELEAVREKHAASVSDLEAARAHSE+EVERLAGMLERGQGEREEL+LRLETAANEL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RRAY QKAEA ASALKAKAAAREA+SPP+VSVTDWEAKQQELEEMEARLS VVSKNQELERKV+TVKAEGQEASLGSEERQAQVAALEA
Sbjct: 80 QLATDLSRAESELARLKEEARQARRALDERNEMVEQLKASKANTKQRYTALLQSHEEANKELELLRTQKLDSSGDSGSGIVEQLRATVENLETNNELLREERGSLQTRLAKRDAAVSAMKADLAAATQRDDALRQKADRLREELDAAAAAS-KAGAQAQWDLDKEALEARIGELETQAASSGRRCVELVAERDLLAEESARREKEHASTVASLRSEMQGLHRRTTADLGDWRQRYRQEVGAKRALEGQLERLVAASESVTRVIEKHAVLEASLQEAYGLLSQAVLAEERGXXXXXXXAARVVEGVLEHLLGRVFQATATSGDEEEEGEDEEGRKEREADRRLSKEASDNLGEELEKLTADMEALRSFGLDEAHTFLEQAKSLETELEAVREKHAASVSDLEAARAHSEREVERLAGMLERGQGEREELKLRLETAANELVINVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRAYAQKAEAMEGENRALHEKLEGLATQASALKAKAAAREATSPPSVSVTDWEAKQQELEEMEARLSTVVSKNQELERKVETVKAEGQEASLGSEERQAQVAALEA 677
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 0 |
| Model size | 1809 |
| Hectar predicted targeting category | other localisation |
| Exons | 7 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-01_000560.1 |
| Cds size | 1809 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462652.2479222-CDS-Ecto-sp13_S_contig12269:1..1081 | 1681462652.2479222-CDS-Ecto-sp13_S_contig12269:1..1081 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig12269 2..1081 + |
| 1681462652.2636395-CDS-Ecto-sp13_S_contig12269:1540..1606 | 1681462652.2636395-CDS-Ecto-sp13_S_contig12269:1540..1606 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig12269 1541..1606 + |
| 1681462652.2720945-CDS-Ecto-sp13_S_contig12269:2224..2512 | 1681462652.2720945-CDS-Ecto-sp13_S_contig12269:2224..2512 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig12269 2225..2512 + |
| 1681462652.280596-CDS-Ecto-sp13_S_contig12269:3035..3113 | 1681462652.280596-CDS-Ecto-sp13_S_contig12269:3035..3113 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig12269 3036..3113 + |
| 1681462652.2887006-CDS-Ecto-sp13_S_contig12269:3394..3474 | 1681462652.2887006-CDS-Ecto-sp13_S_contig12269:3394..3474 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig12269 3395..3474 + |
| 1681462652.2974179-CDS-Ecto-sp13_S_contig12269:3795..3898 | 1681462652.2974179-CDS-Ecto-sp13_S_contig12269:3795..3898 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig12269 3796..3898 + |
| 1681462652.307714-CDS-Ecto-sp13_S_contig12269:4450..4564 | 1681462652.307714-CDS-Ecto-sp13_S_contig12269:4450..4564 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig12269 4451..4564 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12269.1903.1 >prot_Ecto-sp13_S_contig12269.1903.1 ID=prot_Ecto-sp13_S_contig12269.1903.1|Name=mRNA_Ecto-sp13_S_contig12269.1903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=603bp
QLATDLSRAESEVARLKEETRQARRALDERDDMVEQLKASKANTNQRYTA LLQSHEEANKELALLRTQKLDSSSDSGSGSVERLKATVENLETNNELLRE ERGSLQTRLAKRDAAVSAMKADLVAAAQRDDALRQETDRLREELDAAAAA AAKAGAQAEWDLDREVLEARIGELETQAASSGSRCVELVAERDLLAEESA RREKEHASTVASLRSEMQGLHRRTTADLGDWRQRYRQEVGAKKALEGQLE RLVGASESVTRVIEKHAILEASLQEAYGLLSQAVLAEEGGGGGQEEEAAR VVEGVLEHLLGRVFQATATSGDEEEGEDEEGRKEREADRRLSKEASDNLG EELEKLTADMEALRSFGLDEAHTFLEQAKSLETELEAVREKHAASVSDLE AARAHSEQEVERLAGMLERGQGEREELQLRLETAANELAINVELSEQAIA ASVTAGEQDVREAEARRAAEEKRRMQELEADNKKRREELEAERRAYGQKA EALEGENRALHEKLEGLASQASALKAKAAAREASSPPTVSVTDWEAKQQE LEEMEARLSAVVSKNQELERKVQTVKAEGQEASLGSEERQAQVAALEAEV RG* back to topmRNA from alignment at Ecto-sp13_S_contig12269:2..4564+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig12269.1903.1 ID=mRNA_Ecto-sp13_S_contig12269.1903.1|Name=mRNA_Ecto-sp13_S_contig12269.1903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4563bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12269:2..4564+ (Ectocarpus species13 EcNAP12_S_4_19m) CAACTCGCCACCGACCTCTCGCGTGCGGAGTCGGAAGTGGCCAGGTTGAA
GGAAGAGACCCGTCAAGCCCGACGAGCACTGGACGAGCGGGACGACATGG
TTGAGCAACTCAAGGCCAGCAAGGCCAATACCAATCAGCGATATACAGCG
CTGCTCCAGAGCCACGAGGAGGCCAACAAGGAGCTAGCGCTGCTGCGTAC
CCAGAAGCTCGACAGCAGCAGCGACAGCGGCAGCGGCAGCGTGGAGCGGC
TCAAAGCCACGGTCGAGAACCTCGAGACCAACAACGAGCTCCTGCGAGAG
GAGCGGGGTTCGCTCCAGACGCGCCTGGCCAAGCGCGACGCGGCCGTCTC
CGCCATGAAGGCCGACCTCGTGGCCGCCGCGCAACGGGACGACGCCCTGC
GCCAGGAGACTGACCGCTTGCGGGAAGAGCTCGACGCAGCAGCTGCAGCA
GCGGCGAAGGCTGGAGCGCAGGCCGAGTGGGACCTCGACAGAGAAGTCCT
CGAGGCCCGCATCGGCGAGCTCGAGACACAGGCGGCTTCCTCGGGGAGCC
GGTGCGTGGAGCTGGTGGCGGAGCGCGATTTGCTGGCGGAGGAGTCGGCG
CGGCGGGAGAAGGAGCACGCGTCTACGGTGGCTTCCCTCCGGAGCGAGAT
GCAGGGATTGCATAGGAGGACGACGGCAGACCTGGGGGACTGGAGGCAGA
GGTACCGGCAGGAGGTGGGCGCGAAGAAGGCGCTGGAGGGTCAGCTCGAG
CGGCTCGTCGGCGCCAGCGAGAGCGTCACCCGCGTCATCGAGAAGCACGC
CATCCTCGAGGCCTCCCTGCAGGAGGCGTACGGGCTGCTGTCCCAGGCGG
TGCTCGCGGAAGAAGGGGGGGGAGGGGGGCAGGAAGAGGAGGCGGCGAGG
GTGGTTGAAGGGGTGCTCGAGCACCTGCTGGGACGGGTGTTTCAAGCTAC
CGCAACGAGCGGTGACGAGGAGGAAGGCGAGGACGAAGAGGGGAGGAAAG
AGCGGGAGGCTGATCGACGCCTGAGTAAGGAGGCCTCGGACAACCTGGGA
GAGGAGCTGGAGAAGCTTACGGCCGACATGGTGCGCACGTGACTGTACTC
ACCAAGTGTTCGATAGGCTCGAGCCATGAAGTGGCGTGTGCCGTGCCCGT
GCCACGCATACGTGCGGTGATCCACTCGCCGCCGATCGAACGGGTGTGAA
TAGGGAATTGGTGCATTTGGGTGCCCCGGGGGTGTAGGCGACAGATCGCA
AATACAGGGAAGAGCACCTGCCATAATTCGCCCAAGGAGCGGTGAATTGC
AGCGTTTCTCATGCCCTACTCCTGCAATTTGTTCAGTCCTTTCCGTAGAT
ATGCGGTGTGGTTACAAGCCGCCTTTTGACGCTCGCTACCTCCGAGCGTC
CTGTTTATTGCAAAACCTAGCCGTGGTCAGTAAACGAAGTAGAGCTAGAA
GTCTGAATCTTCTTCTCCCCTTCCCCCGTGGAATTCGTTGTTGTGTTGAT
GGCTACGCTGCTGTGGCGGATCTGGAACTTGCGCTGCAGGAAGCCCTTCG
GAGTTTCGGCTTAGATGAGGCCCACACGTTTCTGGAGCAGGCCAAATCGC
TCGAGGTGAGTGAAGAGTTTAGCAAACTTGAAGCTTGTGCATCCAACAGG
AATGGAGGAACTCCTTGCAGTATCTCGAAACCCTGCAACAACGGCTTCGA
GTAGGAAATGCTGCATCCAGTTGGATTATTTCTGCTGCAGTGCCTTTTTT
CTGCGAGAAAGTGGTGCCTCCCGCTCAAAAGAAAACCAAGTCAGAGTTCA
GCTGCCCTCCGCACCCTTTCCACCTGGTCGTCCGGAATCCGCATGTCCTA
AACAATATCGTCTTGGGGTGTGAACGTCCATGACTGTGCGTGTACGTAAG
CGGCAATTCCTGCATTAGGTTGTGTTGGAAGAATCCTCATTCCTTGAGGG
TATGCCCTGGAAAGCACCGATGGAACCCCCGTGTGGCAACAATGCCCCGC
CCTCTCGAGAACGCGTGGTCGGTGTTCCAACCGCTAACGCAAGGCATGCA
AAACATTACTACGCCCTATCAGAGCCGAACTCCATCCACAAGATAAATAG
TCAGCGCTGACTAGGTAGTTAATGGTTTGAAAAAGCTCGTGGGTTTGACA
ACAACCCCCGCCCCTCCCCGTTTCGCTTTCACTTTCACTTTCACTTTCCC
GCGACAACATCCCACAACACCAGACCGAGCTCGAAGCTGTTCGCGAGAAG
CACGCGGCATCGGTGTCCGACCTGGAAGCCGCCCGCGCACACTCGGAGCA
GGAGGTGGAACGCCTGGCCGGCATGCTTGAGAGGGGGCAGGGGGAGCGCG
AGGAGCTCCAGCTGCGCCTGGAGACCGCCGCCAACGAGCTTGCCATCAAC
GTTGAGCTGTCGGAGCAGGCGATCGCCGCTAGCGTGACCGCCGGGGAGCA
GGATGTTAGGGAGGCCGAGGCAAGGAGGGCGGCGGAGGAAAAGCGGCGGA
TGCAAGAGCTGGTGGGGGTCTCGATTGTGGAGCAAAACATTGTTTTTCTT
GTTGATGGTGTTGCTGTGGCTGTTGCTGCTGCTGCTGCTTTGGGGTTGTG
ATCGCTGTTGCCGTTATGGGTGTAGCAGTTGTTGTTGGTGTTATGGATGC
TGCTGCTGCTGTAGTTGGTGTAGTGGCTGTAGTTGGTGTAGTTGGTGTAG
TTGGTGGTGGTCGTGTTATGGCTGCTGCTTGTGCTGTTATTGTTGTTGTT
GTGGCGGTTGCGTAAGGTGATGATTCTGAAAGGAGGAGCGAGAGCCTAGT
CTCAATTGTCTGTGGGTATTTGGACGGCTATAACTCCCGTGTTGTTTCTG
TTCGGATGTTGCTGGCGAGGCCGATGCTGTTAGATCATCGTCCTTGAGCT
GGCTACTTCACCATCAATGAAGGTCCTGACCATTGTATTCTCGAACGCCT
CGGCTCGATTCCCAAAACCAAGAAGCCTTGTTACGAAGCTCCTTCTCTTG
TTTGTTTGTTGGGGTGTCGTGTGTCGTTATGCAGGAAGCCGACAATAAGA
AGCGGAGAGAGGAGCTAGAGGCGGAGCGGCGGGCCTACGGTCAAAAGGCA
GAGGCGTTGGAGGTGCGAACATGTTTCTTTCATAGAAATGGAGGTACCTC
GCTTTTTTGTCGGAGAGAACTAAGGACACGCCTGACGAGCCCATCAAGGG
TGCATAATGGATGGTGTGTTGCCGGGGGGCGGGGTGATGGACGAAGCATT
GCACGAACAGAGCGGCAGTGGTAGTTGTGGTTTGATCGCCGGGTGTACAC
CTCAACCGCAGCCCTCATTAGCTCGGGACCTTGTCTGCATTCTTCTGCCT
TGCGGACCAACCGCACGCCCTGGCGTTGCTCCGGATGGAACAGGGTGAGA
ACCGGGCGCTGCACGAAAAGCTCGAGGGCTTGGCTTCGCAAGCGTCGGCG
CTCAAGGCTAAGGCGGCGGCTAGGTGAGCCTAAAGTCATGGTGCCGTTGC
TGAGATCGCTCCAAAAGTCATGATGTTGTTGATGCGATCGCTCCAAACCC
TGTTGTCCAGGTGGATAACTAGCGCTGTTGTGTACTACGTACTCTGCGGA
AATTTTTCGTTGCTCTGAAATGGTAATTCTCTCTACCCCTTCACGTGTTG
TGAGAGGATGACCAATTCGTGTGAGGTTGTCGATATGTCACCATCCCATT
GTAATGGGACCTGGTTGCCTGCAGTTCGTCGGTGGAATTTTTGTTTCAAC
GAGACGTCCTAACGTCGTTTCTGTTTTGCTGCGTTGATTGATAGGGAGGC
GTCTTCTCCACCGACGGTTTCAGTTACAGATTGGGAGGCAAAGCAGCAAG
AGCTGGAGGAGATGGAAGCACGGCTGTCTGCAGTGGTATCGAAGAACGTG
AGATTGATGGAGGGAGAGCCGTCTTTGTTATTTATTCCCTGCGTGACCCA
CAACAAGTCCAAGTATCCACACATCAGTTGTTGTTGTTGCTGCTGCCGCT
GTTGCGTATTGTTGCTGTTTCTATCAAGAGGTTGTGCTCGAAGAAGGCCA
ACCCTCGTCCTGCAGAGTTTTTCTGGTTCGGGCCTCCATGCCGGGTTCAA
CACAATAATCGACTCGCCTAATATCCCTTTCCCATTGAAGCATCTTCTTT
TGTACGAGTAGTGTTTCCCCGGACACAGCCTCGGCTGTGTAAGTATTGTA
TGTAGGTGATGCAAGTGATTTTGTACCACAAAAATGTGTTCTCCTTTCTT
TCTTTCGCTTTCCCTTTCTCTTTCCCTCCCTCTCCCTCTCTCTCTCCCTT
CTGTATGTCGGCTTCTCCCTGCGGGCCTGTCTCTCACTTTCTCCCACTCT
CCCTCTCTCTCGGGTCCCCTTGTCTCGTTCTCCCTCCCCCTTCCCACACT
TCTCACCTTGTTTATACGCCGCCATGACACCATGATGTCATGATGATAGC
AAGAACTGGAGAGGAAGGTCCAAACCGTCAAAGCCGAGGGACAAGAAGCG
AGCCTTGGAAGCGAAGAACGACAGGCACAGGTCGCAGCGCTAGAGGCAGA
GGTCAGAGGCTAG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig12269:2..4564+ >mRNA_Ecto-sp13_S_contig12269.1903.1 ID=mRNA_Ecto-sp13_S_contig12269.1903.1|Name=mRNA_Ecto-sp13_S_contig12269.1903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1809bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12269:2..4564+ (Ectocarpus species13 EcNAP12_S_4_19m) CAACTCGCCACCGACCTCTCGCGTGCGGAGTCGGAAGTGGCCAGGTTGAA GGAAGAGACCCGTCAAGCCCGACGAGCACTGGACGAGCGGGACGACATGG TTGAGCAACTCAAGGCCAGCAAGGCCAATACCAATCAGCGATATACAGCG CTGCTCCAGAGCCACGAGGAGGCCAACAAGGAGCTAGCGCTGCTGCGTAC CCAGAAGCTCGACAGCAGCAGCGACAGCGGCAGCGGCAGCGTGGAGCGGC TCAAAGCCACGGTCGAGAACCTCGAGACCAACAACGAGCTCCTGCGAGAG GAGCGGGGTTCGCTCCAGACGCGCCTGGCCAAGCGCGACGCGGCCGTCTC CGCCATGAAGGCCGACCTCGTGGCCGCCGCGCAACGGGACGACGCCCTGC GCCAGGAGACTGACCGCTTGCGGGAAGAGCTCGACGCAGCAGCTGCAGCA GCGGCGAAGGCTGGAGCGCAGGCCGAGTGGGACCTCGACAGAGAAGTCCT CGAGGCCCGCATCGGCGAGCTCGAGACACAGGCGGCTTCCTCGGGGAGCC GGTGCGTGGAGCTGGTGGCGGAGCGCGATTTGCTGGCGGAGGAGTCGGCG CGGCGGGAGAAGGAGCACGCGTCTACGGTGGCTTCCCTCCGGAGCGAGAT GCAGGGATTGCATAGGAGGACGACGGCAGACCTGGGGGACTGGAGGCAGA GGTACCGGCAGGAGGTGGGCGCGAAGAAGGCGCTGGAGGGTCAGCTCGAG CGGCTCGTCGGCGCCAGCGAGAGCGTCACCCGCGTCATCGAGAAGCACGC CATCCTCGAGGCCTCCCTGCAGGAGGCGTACGGGCTGCTGTCCCAGGCGG TGCTCGCGGAAGAAGGGGGGGGAGGGGGGCAGGAAGAGGAGGCGGCGAGG GTGGTTGAAGGGGTGCTCGAGCACCTGCTGGGACGGGTGTTTCAAGCTAC CGCAACGAGCGGTGACGAGGAGGAAGGCGAGGACGAAGAGGGGAGGAAAG AGCGGGAGGCTGATCGACGCCTGAGTAAGGAGGCCTCGGACAACCTGGGA GAGGAGCTGGAGAAGCTTACGGCCGACATGGAAGCCCTTCGGAGTTTCGG CTTAGATGAGGCCCACACGTTTCTGGAGCAGGCCAAATCGCTCGAGACCG AGCTCGAAGCTGTTCGCGAGAAGCACGCGGCATCGGTGTCCGACCTGGAA GCCGCCCGCGCACACTCGGAGCAGGAGGTGGAACGCCTGGCCGGCATGCT TGAGAGGGGGCAGGGGGAGCGCGAGGAGCTCCAGCTGCGCCTGGAGACCG CCGCCAACGAGCTTGCCATCAACGTTGAGCTGTCGGAGCAGGCGATCGCC GCTAGCGTGACCGCCGGGGAGCAGGATGTTAGGGAGGCCGAGGCAAGGAG GGCGGCGGAGGAAAAGCGGCGGATGCAAGAGCTGGAAGCCGACAATAAGA AGCGGAGAGAGGAGCTAGAGGCGGAGCGGCGGGCCTACGGTCAAAAGGCA GAGGCGTTGGAGGGTGAGAACCGGGCGCTGCACGAAAAGCTCGAGGGCTT GGCTTCGCAAGCGTCGGCGCTCAAGGCTAAGGCGGCGGCTAGGGAGGCGT CTTCTCCACCGACGGTTTCAGTTACAGATTGGGAGGCAAAGCAGCAAGAG CTGGAGGAGATGGAAGCACGGCTGTCTGCAGTGGTATCGAAGAACCAAGA ACTGGAGAGGAAGGTCCAAACCGTCAAAGCCGAGGGACAAGAAGCGAGCC TTGGAAGCGAAGAACGACAGGCACAGGTCGCAGCGCTAGAGGCAGAGGTC AGAGGCTAG back to top
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