mRNA_Ecto-sp13_S_contig7763.19007.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7763.19007.1
Unique NamemRNA_Ecto-sp13_S_contig7763.19007.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7763.19007.1 vs. uniprot
Match: D8LHY4_ECTSI (Geranyl-diphosphate synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHY4_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 1.650e-40
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:    1 VILMSQACNSNSRQVPPDVQPGTELVNPLQLRLAEITEMIHAASLFHDDVIDEADTRRGVPSVNKVFGNKLAILAG 228
            VILMSQACNSNS+QV PDVQPGTELVNPLQLRLAEITEMIHAASLFHDDVIDEADTRRGVPSVNKVFGNKLAILAG
Sbjct:  231 VILMSQACNSNSQQVRPDVQPGTELVNPLQLRLAEITEMIHAASLFHDDVIDEADTRRGVPSVNKVFGNKLAILAG 306
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BLAST of mRNA_Ecto-sp13_S_contig7763.19007.1 vs. uniprot
Match: A0A7S2B533_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B533_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 9.720e-21
Identity = 52/76 (68.42%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:    1 VILMSQACNSNSRQVPPDVQPGTELVNPLQLRLAEITEMIHAASLFHDDVIDEADTRRGVPSVNKVFGNKLAILAG 228
            V+LMS A  +++     DV PG   V P Q RLAEITEMIH ASLFHDDVID+ADTRRGVPSVN+ FGNKLAIL G
Sbjct:  148 VLLMSHAVAASASAG--DVTPG---VLPSQRRLAEITEMIHTASLFHDDVIDKADTRRGVPSVNRAFGNKLAILGG 218
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BLAST of mRNA_Ecto-sp13_S_contig7763.19007.1 vs. uniprot
Match: A0A836CLR5_9STRA (Geranyl-diphosphate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLR5_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.950e-20
Identity = 48/76 (63.16%), Postives = 54/76 (71.05%), Query Frame = 1 
Query:    1 VILMSQACNSNSRQVPPDVQPGTELVNPLQLRLAEITEMIHAASLFHDDVIDEADTRRGVPSVNKVFGNKLAILAG 228
            V+LMS+ACN++         P        Q RLAEITEMIH ASLFHDDVID+ADTRRG PS N+ FGNKLAILAG
Sbjct:  165 VLLMSRACNASC------APPPAPFALACQRRLAEITEMIHTASLFHDDVIDKADTRRGAPSANRAFGNKLAILAG 234
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BLAST of mRNA_Ecto-sp13_S_contig7763.19007.1 vs. uniprot
Match: A0A8K1CPQ7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPQ7_PYTOL)

HSP 1 Score: 90.9 bits (224), Expect = 8.680e-20
Identity = 50/78 (64.10%), Postives = 56/78 (71.79%), Query Frame = 1 
Query:    1 VILMSQACNSNSRQV--PPDVQPGTELVNPLQLRLAEITEMIHAASLFHDDVIDEADTRRGVPSVNKVFGNKLAILAG 228
            V+L+S A  ++ R V  P       E     Q RLAEITEMIH ASL HDDVIDEADTRRGVPSVNKVFG+KL+ILAG
Sbjct:  137 VLLVSMAAEAHRRAVGLPLPSTQSEEFTVAAQQRLAEITEMIHTASLLHDDVIDEADTRRGVPSVNKVFGDKLSILAG 214
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BLAST of mRNA_Ecto-sp13_S_contig7763.19007.1 vs. uniprot
Match: A0A3M6VHD5_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHD5_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.440e-19
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:    1 VILMSQACNSNSRQVP---PDVQPGTELVNPLQLRLAEITEMIHAASLFHDDVIDEADTRRGVPSVNKVFGNKLAILAG 228
            V+LM++A  ++ R +    PD Q   E  +  Q RLAEITEMIH ASL HDDVIDEADTRRG PSVNK+FG K+A+LAG
Sbjct:  151 VLLMARAAEAHRRAIGTPLPDTQ-SEEYTHAAQQRLAEITEMIHTASLMHDDVIDEADTRRGRPSVNKIFGAKMAVLAG 228
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BLAST of mRNA_Ecto-sp13_S_contig7763.19007.1 vs. uniprot
Match: D0P144_PHYIT (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=D0P144_PHYIT)

HSP 1 Score: 88.6 bits (218), Expect = 6.410e-19
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:    1 VILMSQACNSNSRQVP---PDVQPGTELVNPLQLRLAEITEMIHAASLFHDDVIDEADTRRGVPSVNKVFGNKLAILAG 228
            V+L+S+A  ++ R      P+ Q   E ++  Q RLAEITEMIH ASL HDDVIDEADTRRG PSVNKVFG K+A+LAG
Sbjct:  152 VLLVSRAAEAHRRATDTPLPETQ-SEEYMHAAQQRLAEITEMIHTASLMHDDVIDEADTRRGRPSVNKVFGGKMAVLAG 229
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BLAST of mRNA_Ecto-sp13_S_contig7763.19007.1 vs. uniprot
Match: A0A7S2RZQ9_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RZQ9_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 6.540e-19
Identity = 46/76 (60.53%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:    1 VILMSQACNSNSRQVPPDVQPGTELVNPLQLRLAEITEMIHAASLFHDDVIDEADTRRGVPSVNKVFGNKLAILAG 228
            V+LMS+A N++      + +     V   Q+RL EITEMIH ASL HDDVID ADTRRGV SVN++FGNKLAILAG
Sbjct:  159 VLLMSRAANAHESPAQENDKEMNSAVYASQIRLGEITEMIHTASLLHDDVIDVADTRRGVKSVNQMFGNKLAILAG 234
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BLAST of mRNA_Ecto-sp13_S_contig7763.19007.1 vs. uniprot
Match: A0A2D4C6A7_PYTIN (Solanesyl diphosphate synthase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6A7_PYTIN)

HSP 1 Score: 88.6 bits (218), Expect = 6.570e-19
Identity = 48/78 (61.54%), Postives = 55/78 (70.51%), Query Frame = 1 
Query:    1 VILMSQACNSNSRQV--PPDVQPGTELVNPLQLRLAEITEMIHAASLFHDDVIDEADTRRGVPSVNKVFGNKLAILAG 228
            V+L+S A  ++ R +  P       +     Q RLAEITEMIH ASL HDDVIDEADTRRGVPSVNKVFG KL+ILAG
Sbjct:  159 VLLVSXAAEAHRRALGLPVPTTQSEDFTVAAQQRLAEITEMIHTASLLHDDVIDEADTRRGVPSVNKVFGXKLSILAG 236
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BLAST of mRNA_Ecto-sp13_S_contig7763.19007.1 vs. uniprot
Match: W7TXB8_9STRA (Decaprenyl-diphosphate synthase subunit 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TXB8_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 9.660e-19
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:   82 PLQLRLAEITEMIHAASLFHDDVIDEADTRRGVPSVNKVFGNKLAILAG 228
            P Q RLAEITEMIH ASLFHDDVIDEAD RRGVPS+NK++GNK+AILAG
Sbjct:  223 PSQKRLAEITEMIHTASLFHDDVIDEADERRGVPSINKIYGNKMAILAG 271
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BLAST of mRNA_Ecto-sp13_S_contig7763.19007.1 vs. uniprot
Match: A0A4D9DEU4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DEU4_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 9.830e-19
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:   82 PLQLRLAEITEMIHAASLFHDDVIDEADTRRGVPSVNKVFGNKLAILAG 228
            P Q RLAEITEMIH ASLFHDDVIDEAD RRGVPS+NK++GNK+AILAG
Sbjct:  203 PSQKRLAEITEMIHTASLFHDDVIDEADERRGVPSINKIYGNKMAILAG 251
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7763.19007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHY4_ECTSI1.650e-4097.37Geranyl-diphosphate synthase n=2 Tax=Ectocarpus Ta... [more]
A0A7S2B533_9STRA9.720e-2168.42Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A836CLR5_9STRA1.950e-2063.16Geranyl-diphosphate synthase n=1 Tax=Tribonema min... [more]
A0A8K1CPQ7_PYTOL8.680e-2064.10Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3M6VHD5_9STRA2.440e-1960.76Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
D0P144_PHYIT6.410e-1960.76Uncharacterized protein n=12 Tax=Phytophthora TaxI... [more]
A0A7S2RZQ9_9STRA6.540e-1960.53Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A2D4C6A7_PYTIN6.570e-1961.54Solanesyl diphosphate synthase n=1 Tax=Pythium ins... [more]
W7TXB8_9STRA9.660e-1983.67Decaprenyl-diphosphate synthase subunit 1 n=1 Tax=... [more]
A0A4D9DEU4_9STRA9.830e-1983.67Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7763contigEcto-sp13_S_contig7763:420..1080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score142.9
Seed ortholog evalue5.9e-32
Seed eggNOG ortholog2880.D8LHY4
Preferred nameGPPS
Model size228
KEGG rclassRC00279
KEGG koko:K05355,ko:K14066
KEGG ReactionR01658,R09245,R09246
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00366
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009507,GO:0009536,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0016740,GO:0016765,GO:0022414,GO:0032501,GO:0032502,GO:0042180,GO:0042181,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050347,GO:0051186,GO:0051188,GO:0061458,GO:0071704,GO:1901576,GO:1901661,GO:1901663
Exons2
EggNOG free text desc.isoprenoid biosynthetic process
EggNOG OGsCOG0142@1,KOG0776@2759
EC2.5.1.1,2.5.1.82,2.5.1.83
Cds size219
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01006
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464046.6736703-CDS-Ecto-sp13_S_contig7763:419..5751681464046.6736703-CDS-Ecto-sp13_S_contig7763:419..575Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7763 420..575 -
1681464046.6928833-CDS-Ecto-sp13_S_contig7763:1008..10711681464046.6928833-CDS-Ecto-sp13_S_contig7763:1008..1071Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7763 1009..1071 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464046.7042103-UTR-Ecto-sp13_S_contig7763:1071..10801681464046.7042103-UTR-Ecto-sp13_S_contig7763:1071..1080Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7763 1072..1080 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7763.19007.1prot_Ecto-sp13_S_contig7763.19007.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7763 420..1071 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7763.19007.1

>prot_Ecto-sp13_S_contig7763.19007.1 ID=prot_Ecto-sp13_S_contig7763.19007.1|Name=mRNA_Ecto-sp13_S_contig7763.19007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=73bp
MSQACNSNSRQVPPDVQPGTELVNPLQLRLAEITEMIHAASLFHDDVIDE
ADTRRGVPSVNKVFGNKLAILAG
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mRNA from alignment at Ecto-sp13_S_contig7763:420..1080-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7763.19007.1 ID=mRNA_Ecto-sp13_S_contig7763.19007.1|Name=mRNA_Ecto-sp13_S_contig7763.19007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=661bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7763:420..1080- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTATCCTGATGAGCCAGGCGTGCAACAGTAATTCGCGGCAGGTTCCACC
AGATGTCCAACCGGGAACAGAGGTTCGTCTCTCTCTAAATATATACATCG
TATACATAAATGTTTCTCGGTGTGTGGCTCTGCCTTGCTTCCATGTTGCC
GTTGAAGTTTTTTGGACTCCTTTGGCCCGTCGCTTCCGACCCAACCCTCG
ATATGCTCATGTTGCCCCGCGGTGCGGTATTCCCGTGGAGCATAGTTTGC
TCCATTCTTCTCTATTGTACACTGGACCGGTAATGCTGTACACTGGACCG
GTAAATGCTGTACACTGGACCGGTAAATGCTCCACGAATACATTTCCTAG
CTTGTAGTTGTTGTGGTGATGACGATTGGTGCTACTGCGCTAACCCTCCG
AAAGCTGGTGATGTTTCCTCGCCCTTCTCTTCCACGCTTGCCTCTATGCC
TTGCTTCGAAAAAACAAACTCAACAAACTTCCATGGTTCGGTGCGATTCT
GGAAGCTGGTGAACCCGCTGCAGCTGCGGCTGGCGGAGATAACGGAGATG
ATCCACGCCGCCTCCTTGTTCCACGATGACGTCATCGACGAGGCGGACAC
GCGTAGGGGGGTGCCGTCGGTGAACAAGGTCTTCGGCAACAAGCTCGCAA
TTCTTGCCGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7763:420..1080-

>mRNA_Ecto-sp13_S_contig7763.19007.1 ID=mRNA_Ecto-sp13_S_contig7763.19007.1|Name=mRNA_Ecto-sp13_S_contig7763.19007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7763:420..1080- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCCAGGCGTGCAACAGTAATTCGCGGCAGGTTCCACCAGATGTCCA
ACCGGGAACAGAGCTGGTGAACCCGCTGCAGCTGCGGCTGGCGGAGATAA
CGGAGATGATCCACGCCGCCTCCTTGTTCCACGATGACGTCATCGACGAG
GCGGACACGCGTAGGGGGGTGCCGTCGGTGAACAAGGTCTTCGGCAACAA
GCTCGCAATTCTTGCCGGC
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