mRNA_Ecto-sp13_S_contig77552.18987.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig77552.18987.1
Unique NamemRNA_Ecto-sp13_S_contig77552.18987.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig77552.18987.1 vs. uniprot
Match: A0A6H5J904_9PHAE (Polyketide_cyc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J904_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.850e-17
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:    1 EVAWESTTGLSNRGRVTFDDKGDGRCLMTLTLSYNLP 111
            EVAWESTTGLSNRGRVTFDDKGDGRCLMTLTLSYNLP
Sbjct:  143 EVAWESTTGLSNRGRVTFDDKGDGRCLMTLTLSYNLP 179
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BLAST of mRNA_Ecto-sp13_S_contig77552.18987.1 vs. uniprot
Match: D8LS08_ECTSI (Polyketide_cyc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS08_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.890e-16
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 EVAWESTTGLSNRGRVTFDDKGDGRCLMTLTLSYNLP 111
            EVAWESTTGLSNRGRVTFDDKG  RCLMTLTLSYNLP
Sbjct:  127 EVAWESTTGLSNRGRVTFDDKGGERCLMTLTLSYNLP 163
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BLAST of mRNA_Ecto-sp13_S_contig77552.18987.1 vs. uniprot
Match: A0A5J4Z354_PORPP (Polyketide_cyc domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z354_PORPP)

HSP 1 Score: 50.1 bits (118), Expect = 3.750e-6
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    4 VAWESTTGLSNRGRVTFDDKGDGRCL-MTLTLSYNLP 111
            + WES TGLSNRG+VTF D  DG    MTLT+S+N+P
Sbjct:  113 IQWESVTGLSNRGKVTFADADDGASTNMTLTVSFNVP 149
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig77552.18987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J904_9PHAE1.850e-17100.00Polyketide_cyc domain-containing protein n=1 Tax=E... [more]
D8LS08_ECTSI1.890e-1694.59Polyketide_cyc domain-containing protein n=1 Tax=E... [more]
A0A5J4Z354_PORPP3.750e-662.16Polyketide_cyc domain-containing protein n=1 Tax=P... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig77552contigEcto-sp13_S_contig77552:207..317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score76.3
Seed ortholog evalue3.5e-12
Seed eggNOG ortholog2880.D8LS08
Model size111
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.Polyketide cyclase / dehydrase and lipid transport
EggNOG OGs2QSDH@2759,COG5637@1
Cds size111
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464045.295057-CDS-Ecto-sp13_S_contig77552:206..3171681464045.295057-CDS-Ecto-sp13_S_contig77552:206..317Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77552 207..317 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig77552.18987.1prot_Ecto-sp13_S_contig77552.18987.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig77552 207..317 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig77552.18987.1

>prot_Ecto-sp13_S_contig77552.18987.1 ID=prot_Ecto-sp13_S_contig77552.18987.1|Name=mRNA_Ecto-sp13_S_contig77552.18987.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=37bp
EVAWESTTGLSNRGRVTFDDKGDGRCLMTLTLSYNLP
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mRNA from alignment at Ecto-sp13_S_contig77552:207..317+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig77552.18987.1 ID=mRNA_Ecto-sp13_S_contig77552.18987.1|Name=mRNA_Ecto-sp13_S_contig77552.18987.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77552:207..317+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGTGGCGTGGGAGAGCACGACGGGCCTCAGCAACCGGGGTCGAGTGAC
GTTCGACGACAAGGGGGACGGGCGATGCCTCATGACGCTGACGCTGTCGT
ACAACCTGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig77552:207..317+

>mRNA_Ecto-sp13_S_contig77552.18987.1 ID=mRNA_Ecto-sp13_S_contig77552.18987.1|Name=mRNA_Ecto-sp13_S_contig77552.18987.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77552:207..317+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGTGGCGTGGGAGAGCACGACGGGCCTCAGCAACCGGGGTCGAGTGAC
GTTCGACGACAAGGGGGACGGGCGATGCCTCATGACGCTGACGCTGTCGT
ACAACCTGCCG
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