mRNA_Ecto-sp13_S_contig7746.18981.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7746.18981.1 vs. uniprot
Match: D7G5S5_ECTSI (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5S5_ECTSI) HSP 1 Score: 229 bits (584), Expect = 2.730e-73 Identity = 119/135 (88.15%), Postives = 122/135 (90.37%), Query Frame = 2
Query: 218 ITDNFGRTPPPXXXXXXKTVKNEAELTKLLASDGLVVVKFHAVLCDASRAVEGRFKQTAAEFGDMDGKQVTFADVCFDSNRQLCKRMGIKSVPHVQIFSGSKGKIADFSIAPLQYNTLTSLLSERRDSVAAGGQL 622
+ DN P P KTVKNEAELTKLLASDGLVVVKFHA+LCDASRAVEGRF+QTAAEFGDMD KQVTFADVCFDSNRQLCKRMGIKSVPHVQIFSGSKGKIADFSIAPLQYNTLTSLLSERRDSVAAGGQL
Sbjct: 71 VWDNRQFRPNPAPPAP-KTVKNEAELTKLLASDGLVVVKFHAILCDASRAVEGRFRQTAAEFGDMDNKQVTFADVCFDSNRQLCKRMGIKSVPHVQIFSGSKGKIADFSIAPLQYNTLTSLLSERRDSVAAGGQL 204
BLAST of mRNA_Ecto-sp13_S_contig7746.18981.1 vs. uniprot
Match: D7FJA4_ECTSI (Thioredoxin/AMP-activated kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJA4_ECTSI) HSP 1 Score: 130 bits (328), Expect = 6.040e-35 Identity = 71/120 (59.17%), Postives = 87/120 (72.50%), Query Frame = 2
Query: 269 KTVKNEAELTKLLAS---DGLVVVKFHAVLCDASRAVEGRFKQTAAEFGDMDGKQVTFADVCFDSNRQLCKRMGIKSVPHVQIFSGSKGKIADFSIAPLQYNTLTSLLSERRDSVAAGGQ 619
+TV++E EL +LL + LVVVKF LC AS+AVE +FKQTAAEF + D V FA V SN LCK+MG++SVPHVQIFSG GKIADFS+AP +Y+TL +LL ERRDS+ A Q
Sbjct: 56 QTVRDETELAQLLDATRPSSLVVVKFGKALCKASKAVEEKFKQTAAEFSECDKTDVQFASVDSGSNWLLCKKMGVRSVPHVQIFSGYNGKIADFSLAPPEYDTLDALLGERRDSMLAWKQ 175
BLAST of mRNA_Ecto-sp13_S_contig7746.18981.1 vs. uniprot
Match: A0A7S2UII6_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UII6_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 5.800e-12 Identity = 35/91 (38.46%), Postives = 55/91 (60.44%), Query Frame = 2
Query: 314 DGLVVVKFHAVLCDASRAVEGRFKQTAAEFGD--------MDGKQVTFADVCFDSNRQLCKRMGIKSVPHVQIFSGSKGKIADFSIAPLQY 562
D L VVKFHA C + + R+K+ A + GD ++ +V FA+V F +N LCK +G+ +P++ I+SGSKG++ADF+ P +
Sbjct: 3 DRLCVVKFHASWCKSCQKFGIRYKKLALQEGDKIDRRGAVLEKGRVRFAEVEFTANADLCKTLGVHKLPYIHIYSGSKGRVADFACGPKNF 93
BLAST of mRNA_Ecto-sp13_S_contig7746.18981.1 vs. uniprot
Match: A0A7S1TN71_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TN71_9RHOD) HSP 1 Score: 70.1 bits (170), Expect = 2.310e-11 Identity = 32/94 (34.04%), Postives = 57/94 (60.64%), Query Frame = 2
Query: 308 ASDGLVVVKFHAVLCDASRAVEGRFKQTAAEFGDMDGKQVTFADVCFDSNRQLCKRMGIKSVPHVQIFSGSKGKIADFSIAPLQYNTLTSLLSE 589
+S+ LVV+KF+A C + +A+E + K+ A E+ ++ F +V F N +LC+R+G+KS+P + GS G++ DF+ P + L ++E
Sbjct: 98 SSERLVVIKFYAPWCRSCKAMEPKVKRLAREY-----PEILFCEVDFQENHELCRRIGVKSIPAFHFYDGSAGRVEDFTAGPARAKMLIEKVAE 186
BLAST of mRNA_Ecto-sp13_S_contig7746.18981.1 vs. uniprot
Match: A0A7S4C0Q1_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C0Q1_CHRCT) HSP 1 Score: 69.3 bits (168), Expect = 3.940e-11 Identity = 34/99 (34.34%), Postives = 60/99 (60.61%), Query Frame = 2
Query: 287 AELTKLLASDGLVVVKFHAVLCDASRAVEGRFKQTAAEFGDMDGKQVTFADVCFDSNRQLCKRMGIKSVPHVQIFSGSKGKIADFSIAPLQYNTLTSLL 583
A++ + + +VV+K +A C A +A+ ++++ A ++ D V F D+ FD+N+ LCK +GIK +P+V+I +G KGK+ FS P + + L L
Sbjct: 75 AKIEEAKRENQVVVIKVYASWCRACKAMAPKYQRIAEDWPD-----VEFCDILFDNNKNLCKSLGIKVLPYVEIIAGGKGKVEGFSCGPSKVSQLQEKL 168
BLAST of mRNA_Ecto-sp13_S_contig7746.18981.1 vs. uniprot
Match: A0A7S0J7Q1_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J7Q1_9EUKA) HSP 1 Score: 69.7 bits (169), Expect = 4.670e-11 Identity = 30/100 (30.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query: 284 EAELTKLLASDGLVVVKFHAVLCDASRAVEGRFKQTAAEFGDMDGKQVTFADVCFDSNRQLCKRMGIKSVPHVQIFSGSKGKIADFSIAPLQYNTLTSLL 583
+A++ + + +V++KFHA C A +A+ ++++ A ++ +++ F ++ FD+N++LCK +GIK +P+V++ G+ GK+ FS P + + L L
Sbjct: 103 QAKIDEATRENKVVIIKFHASWCRACKAMAPKYQRVAEDWPELE-----FCEILFDNNKKLCKSLGIKILPYVEVIGGTLGKVEGFSCGPSKISRLQERL 197
BLAST of mRNA_Ecto-sp13_S_contig7746.18981.1 vs. uniprot
Match: A0A7S3WN14_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WN14_EMIHU) HSP 1 Score: 68.9 bits (167), Expect = 7.810e-11 Identity = 34/114 (29.82%), Postives = 63/114 (55.26%), Query Frame = 2
Query: 242 PPPXXXXXXKTVKNEAELTKLLASDGLVVVKFHAVLCDASRAVEGRFKQTAAEFGDMDGKQVTFADVCFDSNRQLCKRMGIKSVPHVQIFSGSKGKIADFSIAPLQYNTLTSLL 583
P P A+L + + +V +KF+A C A +A+ ++K+ A ++ ++ F +V FD+N+ LCK +GIK +P++++ +GS GK+ FS P + ++L L
Sbjct: 78 PTPGLTHLEDEAAYRAKLAQAESESRVVCIKFYASWCRACKAMAPKYKRVADDW-----PEIEFCEVLFDTNKALCKGLGIKVLPYIEVVAGSAGKVEGFSCGPSKISSLMEKL 186
BLAST of mRNA_Ecto-sp13_S_contig7746.18981.1 vs. uniprot
Match: A0A7S3TUC7_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TUC7_9SPIT) HSP 1 Score: 67.4 bits (163), Expect = 8.980e-11 Identity = 31/100 (31.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query: 284 EAELTKLLASDGLVVVKFHAVLCDASRAVEGRFKQTAAEFGDMDGKQVTFADVCFDSNRQLCKRMGIKSVPHVQIFSGSKGKIADFSIAPLQYNTLTSLL 583
EA++ + A + +VV+KF+A C A +A+ ++ + A ++ +++ F ++ +D+N++LCK +GIK +P+++I +G+ GK+ FS P + + L L
Sbjct: 26 EAKIEQAKAENRVVVIKFYASWCRACKAMGPKYVKVAQDWPELE-----FCEMLYDNNKKLCKELGIKVLPYIEIVAGNAGKVDGFSCGPSKISKLIERL 120
BLAST of mRNA_Ecto-sp13_S_contig7746.18981.1 vs. uniprot
Match: A0A7S3ATR9_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ATR9_9EUKA) HSP 1 Score: 67.8 bits (164), Expect = 1.420e-10 Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = 2
Query: 284 EAELTKLLASDGLVVVKFHAVLCDASRAVEGRFKQTAAEFGDMDGKQVTFADVCFDSNRQLCKRMGIKSVPHVQIFSGSKGKIADFSIAPLQYNTLTSLLSE 589
EA + + + +VV+KF A C A +A+ +F + A ++ D V F ++ FD+N++LCK +GIK +P+++I GS GK+ F+ P + + L L +
Sbjct: 65 EALIEEATRENRVVVIKFFASWCRACKAMSPKFTRIADDWPD-----VEFHEIMFDNNKKLCKSLGIKILPYIEIIGGSGGKVEGFTCGPSKISRLQEKLEQ 161
BLAST of mRNA_Ecto-sp13_S_contig7746.18981.1 vs. uniprot
Match: A0A7S2GHN9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2GHN9_9EUKA) HSP 1 Score: 65.1 bits (157), Expect = 2.600e-9 Identity = 31/89 (34.83%), Postives = 53/89 (59.55%), Query Frame = 2
Query: 323 VVVKFHAVLCDASRAVEGRFKQTAAEFGDMDGKQVTFADVCFDSNRQLCKRMGIKSVPHVQIFSGSKGKIADFSIAPLQYNTLTSLLSE 589
V +K +A C A +A+ ++++ A D + V F ++ FD N+ LCK +GIK +P +++ +GSKGK+ F+ P + + LT L E
Sbjct: 88 VCIKIYATWCRACKAMGPKYERIAK---DPEYSHVEFYEIAFDDNKALCKSLGIKVLPVIEVVAGSKGKVTSFACGPSKMSKLTFALEE 173 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7746.18981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7746.18981.1 >prot_Ecto-sp13_S_contig7746.18981.1 ID=prot_Ecto-sp13_S_contig7746.18981.1|Name=mRNA_Ecto-sp13_S_contig7746.18981.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=152bp MTKQQMRLRMSLSGSGITDNFGRTPPPPPPKPPKTVKNEAELTKLLASDGback to top mRNA from alignment at Ecto-sp13_S_contig7746:3498..6484- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7746.18981.1 ID=mRNA_Ecto-sp13_S_contig7746.18981.1|Name=mRNA_Ecto-sp13_S_contig7746.18981.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2987bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7746:3498..6484- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7746:3498..6484- >mRNA_Ecto-sp13_S_contig7746.18981.1 ID=mRNA_Ecto-sp13_S_contig7746.18981.1|Name=mRNA_Ecto-sp13_S_contig7746.18981.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7746:3498..6484- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |