mRNA_Ecto-sp13_S_contig1226.1897.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1226.1897.1
Unique NamemRNA_Ecto-sp13_S_contig1226.1897.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1226.1897.1 vs. uniprot
Match: D8LKH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH3_ECTSI)

HSP 1 Score: 321 bits (822), Expect = 2.610e-105
Identity = 164/181 (90.61%), Postives = 172/181 (95.03%), Query Frame = 3 
Query:  966 MNHREAYRYTVGKGNFEAVKRTLLEKEDALRKGTGSFLMADTIQRFRSSSEKRPPTSELSARRGSQRRQTTAKRAMVHIESDPFQCGGYNSDKLKREETRRQDLLVHAKGRNNMFCRQKGYEPGDFLKHRSPPGGQNFDSGAASCRRGSVGGAISARKGGARSAKAAVMAAESRRKVHQHL 1508
            MNH+EAYRYT GKGNFEA KRTLLEKEDALRKGTGSFLMADTIQRFRSSSE RPPTS+LSARRGSQRR+  AKRAMV IESDPFQCGGYNS+KLKREETRRQDLLVHAKGRNNMFCR+KGYEPGDFLKHRSPPGGQ+F+SGAASCRRGSVGGAI ARKGGARSA+AA MAAESRRK HQHL
Sbjct:    1 MNHQEAYRYTAGKGNFEAEKRTLLEKEDALRKGTGSFLMADTIQRFRSSSEGRPPTSDLSARRGSQRRRAAAKRAMVPIESDPFQCGGYNSEKLKREETRRQDLLVHAKGRNNMFCRRKGYEPGDFLKHRSPPGGQDFNSGAASCRRGSVGGAIGARKGGARSAEAAAMAAESRRKAHQHL 181
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1226.1897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKH3_ECTSI2.610e-10590.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1226contigEcto-sp13_S_contig1226:9755..14174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1511
Hectar predicted targeting categorymitochondrion
Exons7
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_002960.1
Cds size1332
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1226.1897.1prot_Ecto-sp13_S_contig1226.1897.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1226 9934..14174 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462651.88015-UTR-Ecto-sp13_S_contig1226:9754..99331681462651.88015-UTR-Ecto-sp13_S_contig1226:9754..9933Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1226 9755..9933 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462651.8900592-CDS-Ecto-sp13_S_contig1226:9933..100731681462651.8900592-CDS-Ecto-sp13_S_contig1226:9933..10073Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1226 9934..10073 +
1681462651.899703-CDS-Ecto-sp13_S_contig1226:10099..106771681462651.899703-CDS-Ecto-sp13_S_contig1226:10099..10677Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1226 10100..10677 +
1681462651.9091234-CDS-Ecto-sp13_S_contig1226:11166..112731681462651.9091234-CDS-Ecto-sp13_S_contig1226:11166..11273Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1226 11167..11273 +
1681462651.919153-CDS-Ecto-sp13_S_contig1226:11507..115821681462651.919153-CDS-Ecto-sp13_S_contig1226:11507..11582Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1226 11508..11582 +
1681462651.9292638-CDS-Ecto-sp13_S_contig1226:12225..123321681462651.9292638-CDS-Ecto-sp13_S_contig1226:12225..12332Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1226 12226..12332 +
1681462651.9387877-CDS-Ecto-sp13_S_contig1226:13018..131561681462651.9387877-CDS-Ecto-sp13_S_contig1226:13018..13156Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1226 13019..13156 +
1681462651.9478228-CDS-Ecto-sp13_S_contig1226:13987..141741681462651.9478228-CDS-Ecto-sp13_S_contig1226:13987..14174Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1226 13988..14174 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1226.1897.1

>prot_Ecto-sp13_S_contig1226.1897.1 ID=prot_Ecto-sp13_S_contig1226.1897.1|Name=mRNA_Ecto-sp13_S_contig1226.1897.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=444bp
MEGSNKILLVLRSFPRPCRQMATARSRQRLSRPSTAPAHRDLAPSPPIYS
PVSTSRNGDVGGVGGIGGLHQRQHQQQIELLRPHTADATTMRQPHTMVGG
GVVQGAAMIIPVNADGGRPEPAPVMGVENHRRPTTSDASPQRQQQQRRRD
ASIEPTPNTSSRAQAAAVEGGGQLRPSTTGGGRRRGTVVAHGGLDTTTAA
PNANGVGQRVTDGDGDSSRRRRQLIQQQQHQPPIVLRKEAFLRPFIQRNQ
EHLWAYDPAFVGMNHREAYRYTVGKGNFEAVKRTLLEKEDALRKGTGSFL
MADTIQRFRSSSEKRPPTSELSARRGSQRRQTTAKRAMVHIESDPFQCGG
YNSDKLKREETRRQDLLVHAKGRNNMFCRQKGYEPGDFLKHRSPPGGQNF
DSGAASCRRGSVGGAISARKGGARSAKAAVMAAESRRKVHQHL*
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mRNA from alignment at Ecto-sp13_S_contig1226:9755..14174+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1226.1897.1 ID=mRNA_Ecto-sp13_S_contig1226.1897.1|Name=mRNA_Ecto-sp13_S_contig1226.1897.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1226:9755..14174+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCTGCCCCGCCACGCACGTGTGTTTCGCGTGACCACACGTAGTTCCTGG
GCTTTGATGTGCTGGACCCCCGCTTTCGCGGGGTGCTTGTCGAGTCCAAA
GTCACAGCTCTGAGCAAGGCGGATTCACTCCATCGACTCATTTCAAAACA
CGACGCAGATCCTCTCCAAATGGGTCTGTATGGAAGGGAGCAACAAAATT
CTCTTGGTTCTTCGGAGTTTTCCAAGGCCGTGCCGACAAATGGCTACGGC
GAGGTCGAGGCAACGATTGTCGCGTCCCTCGACTGCCCCGGCGCACCGCG
ACCTCGCTCCATCACCACCGCGAAGCTGGCAAAGAAAGTGTGCAGAATAT
ATTCGCCAGTGTCCACGAGTCGCAACGGCGACGTAGGTGGTGTGGGTGGG
ATTGGTGGTCTACATCAGCGACAACATCAGCAGCAAATTGAGCTGTTGCG
TCCGCATACAGCCGATGCGACGACCATGCGCCAACCTCACACTATGGTCG
GGGGAGGAGTAGTCCAAGGAGCGGCCATGATCATTCCCGTGAACGCCGAC
GGGGGACGCCCTGAACCGGCACCCGTGATGGGCGTTGAAAACCACAGACG
GCCCACAACCTCTGACGCTTCGCCACAACGACAGCAGCAGCAGAGGCGTC
GTGATGCAAGTATTGAGCCTACCCCTAACACTAGCAGTCGCGCCCAGGCA
GCGGCAGTGGAAGGAGGTGGGCAACTGAGGCCGTCGACCACGGGTGGGGG
GAGGAGGCGAGGGACCGTCGTTGCCCATGGTGGATTGGACACAACAACAG
CTGCGCCCAATGCCAACGGGGTCGGTCAACGGGTAACAGATGGGGATGGG
GACAGCAGCAGAAGGCGGAGGCAACTTATACAACAACAGCAGCATCAGCC
GCCAATTGTTCTGCGCAAGGAGGGTCCACGAAGGCAGCAGACGTCACCTG
GTCCTAATACTAGGGCCAACAAGGCACGAGCGTCACCGAACAATCATTTC
GATCGAAGGTAACAAGCAGGCCTCACATACATGCGAAATCGGCACTCACA
TGTTTCCAGGAATTCTCCATGAACATAAATTCTATTTGAGCAACTACAAT
ACAAATTCACGTCGGGATGAGGAGTTCAGGTGGTTCCTCTATGCCTTAGA
ATCCTTATACCGGCCCACCCTACCTTTTTCATCAAGACCAACACTGTTGG
TGTCTGTACAAAAGAGACCGTAACCGTACTGGAAAGTGAAAAACAGCATC
GGCAGCAACAAAAGGAGCGACGACAGGGAACGCTTCAACCGGTTCACGGG
CGGACATCATTTTGCATCTTGAAAATTCTTTGTTTCAGTCTCCAGGACAG
CATGGCGGGGGACGCCGAAGCACCACCGAACAGGTACTGGCCTTCACCGG
GCGGCTTCAAAGCGTTTCTACGGCCGTTCATACAGAGAAATCAAGAGCAT
CTCTGGGCGTATGACCCTGCATTCGTCGGGATGAACCACCGGGAGGCCTA
CCGCTACACTGTCGGCAAGGTACGTACACTTGCTACCTTGTGGAAGCTAG
TTAGGACGATGCGAGTCAACCGGCAAGAACTTTTTACGATGACGCAATCG
TTCCTTGCGGTTATCTGAACGCGTTGCCGCGAGATGAGAGCTTGTGACCC
TCGCTACAATTTGCGAACGTGTGCTTCACGCCAGCCGTTGTTCTTGTGGC
CGCTGCTGTTTTTTTTTTTTCCTCCATTTTTCGTGTCGGATGCCAACATT
CAGGGAAACTTCGAGGCGGTAAAACGAACCCTTTTGGAGAAGGAAGACGC
TCTGAGAAAAGGGACGGGTTCGTTTCTGGTGAGAGTCAACCTCCCGCCTT
AGCAACGTACTACCAATGATGTCCGATACAAAGTACCAGTGAAATCATGA
CGCACACCCTACCGATCTCTTGTTGCTTTTGAGCTTGAATTGGGCGAACA
TGAGGTGATGTTCTAGGAGGCACAACACACGAAGTTTTTTTTCCTTGAAT
ACACGCGCAGTATCTTTCTTGGTTCTGATGCCCCCCTGCGCGCTCCTCCG
AATCCCCGAGAAAAGCGGCTCTTAGGACGGAATGGGGGCAGATGGTGCAT
GTTGCCCCTCGACACGCACAGACGCACGCAACCAGATCAGTCCTATCTGT
GGACGTTCCGCGATAATGATCGCACAGGCACCATTGATGTCAATTTTTCT
ACGAGATCGATCTACTCTCCTTCCGAACGACAAAAAACAGAACCATCGTC
GGGCGACAAACCAGTTCTTGCTACGCCCTGAGCAACGACGATGTCATTGC
ATTGAGTCGATCCACACTATTACTTGCAGACTGGCTACGCAACGCGCCAA
GGGTGATTGGCGTTTCGAACGGCGTCTTTCGAACGAACACTGCGGTAGTC
CTGCCGCTTTGAAGGTCTCAATGTGACTCCGTTCACCTCTGGCTGCCAAC
GTCTAAACTTTGGGGTGGCAGATGGCAGATACGATCCAACGGTTTAGAAG
CAGCTCGGAGAAGAGACCACCGACATCCGAACTCTCGGCCAGGAGGGGTT
CGCAGAGAAGACAAACGACGGCAAAAAGGTGCGAACTGTATCTTCTTCTT
TCCATGGCTTTTCACCTCGTGGAAGCTTGCTTTAGCCACATGAGGATGGC
TGAATAACTTCTTCCACACCGTGGGTGTATCCCAGTCGCCGCTATGTACT
GCGGACCCTTGATGCACGCGTACAACGCGCGGTTTGGTCCATTGTCTTGT
GTGCACTAGTGCGCCGTACCGGCGATACCGTCGATATATCCCTTGACCAT
ATTTTCTCTAGATCAACAGCGACGAGGTTTTCACACCAGCATGAGAAAAT
ATTTCATCAAGTTTCCCATCGAACCTTCTGTTGTGCGTCACCTCAAGAAG
TGTCTAGCTGCCGAAAAGAAGTCGAGACCGCGAGATTGAGTGTCCGTTTT
CCACGATGTGATTTTCAGTTTTTGCCATGCGAACGTAGTTGTTCGAAGCA
CTGTCCTCACACCGTGCGGGACTTCTATTTTCCATCCGCCGCCCGCATAG
GAAGCGACATACGCATAATACCTGTTGGATCTTTTTCAGTTTGCTCACAA
TGACGATGTCCATCTGTCGGCTGATGACCACTTGACCACCATGCTCGACC
CCCATCATTTGAACCATCTTGCAAGAGACTTGCCAAGTGCGCAACCTCTA
TATCCCCCACCTGCGCGTGTTCCCCAACACGCACGCCTCTTGCTCTCCGA
AAATCTTCTTACAGGGCGATGGTGCACATCGAGTCAGACCCCTTTCAATG
CGGTGGGTACAACAGCGATAAGCTCAAGCGGGAAGAGACGAGGCGCCAAG
ACTTGCTAGTTCACGCCAAGGGCAGGAACAACATGTTTTGTAGGCAAAAA
GGGTGAGAAACGGGAAAGGGGAGGGAGCATAAAACCATCGAAGGGAACAG
GGGGGCGTGTGGGATGTGGCGATACACTTGCAAAGCAGTTGGGTAGTTGC
GCTCAACCGAACTCACGACTGCCCTAACCTTCGCTACCGTAGAAAGGACA
GTCCTCCCTCAGGCAACTGTTGCTGCGTGACGAAAACGCTCCTGAGAAGG
TCACTGGAAGGATCGCTATTAATCGTACCTCGATTTGTGTAACACCAACT
CTTCGAAGATGGGAGAGGCACAAAAAGCTGCCATAAGCTTGTCCATGTTA
AGTTTTTTTCAAGAGGGAAGAAGGAGCGACATGAAACGCCCAACTCATAC
TATATACTCCTCACCACTTGATTCGTCGCGGTGAGCAAGCGCGCGAGCGG
CAACATAGGGTCCGTCGGTAGGGTAGTGGTCTTGCGGTCGACTCGAATGT
TGGCACTTGGTTGATTTCTCGTTTTCTCGCGTAGTGTCCTTTCCAAGACA
CGCACTGCACCACATTCCGGGAGTTGTCTTCCGGGGAGAAGTGGCACGCA
TGACCTCTTGCCTCTTGTTCAGTCTAAATGTCTAAGTTTCTTGCCCTCCA
AGTGACAAGCCCGTCTACTTGGCTACCAATGATGGTCTTCGAGATATACG
AAGGCGTTGAGCAACTGGCAAACAATGAGAGTTTTTTTGCGCAGCATGGC
TTTCATCTGTGTTGCCTCTCCCTCGGGTGCACTGCGTTCACAATTCCCAA
TAATGTCTGCAATTGCCCCATCTTGCCCAAATCCCCTCATCCCGTCTCTG
CGAACGAAAACGCCCGACCGTTGTCGTGGGCAGCTACGAGCCGGGTGATT
TTCTGAAGCACCGTTCGCCACCGGGCGGACAGAATTTCGACAGCGGCGCC
GCCAGCTGCAGAAGAGGCAGCGTCGGCGGCGCCATTAGTGCCAGGAAGGG
TGGCGCCCGGTCTGCTAAGGCCGCCGTCATGGCCGCCGAATCGCGCCGAA
AAGTACACCAGCACTTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1226:9755..14174+

>mRNA_Ecto-sp13_S_contig1226.1897.1 ID=mRNA_Ecto-sp13_S_contig1226.1897.1|Name=mRNA_Ecto-sp13_S_contig1226.1897.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1332bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1226:9755..14174+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGGGAGCAACAAAATTCTCTTGGTTCTTCGGAGTTTTCCAAGGCC
GTGCCGACAAATGGCTACGGCGAGGTCGAGGCAACGATTGTCGCGTCCCT
CGACTGCCCCGGCGCACCGCGACCTCGCTCCATCACCACCAATATATTCG
CCAGTGTCCACGAGTCGCAACGGCGACGTAGGTGGTGTGGGTGGGATTGG
TGGTCTACATCAGCGACAACATCAGCAGCAAATTGAGCTGTTGCGTCCGC
ATACAGCCGATGCGACGACCATGCGCCAACCTCACACTATGGTCGGGGGA
GGAGTAGTCCAAGGAGCGGCCATGATCATTCCCGTGAACGCCGACGGGGG
ACGCCCTGAACCGGCACCCGTGATGGGCGTTGAAAACCACAGACGGCCCA
CAACCTCTGACGCTTCGCCACAACGACAGCAGCAGCAGAGGCGTCGTGAT
GCAAGTATTGAGCCTACCCCTAACACTAGCAGTCGCGCCCAGGCAGCGGC
AGTGGAAGGAGGTGGGCAACTGAGGCCGTCGACCACGGGTGGGGGGAGGA
GGCGAGGGACCGTCGTTGCCCATGGTGGATTGGACACAACAACAGCTGCG
CCCAATGCCAACGGGGTCGGTCAACGGGTAACAGATGGGGATGGGGACAG
CAGCAGAAGGCGGAGGCAACTTATACAACAACAGCAGCATCAGCCGCCAA
TTGTTCTGCGCAAGGAGGCGTTTCTACGGCCGTTCATACAGAGAAATCAA
GAGCATCTCTGGGCGTATGACCCTGCATTCGTCGGGATGAACCACCGGGA
GGCCTACCGCTACACTGTCGGCAAGGGAAACTTCGAGGCGGTAAAACGAA
CCCTTTTGGAGAAGGAAGACGCTCTGAGAAAAGGGACGGGTTCGTTTCTG
ATGGCAGATACGATCCAACGGTTTAGAAGCAGCTCGGAGAAGAGACCACC
GACATCCGAACTCTCGGCCAGGAGGGGTTCGCAGAGAAGACAAACGACGG
CAAAAAGGGCGATGGTGCACATCGAGTCAGACCCCTTTCAATGCGGTGGG
TACAACAGCGATAAGCTCAAGCGGGAAGAGACGAGGCGCCAAGACTTGCT
AGTTCACGCCAAGGGCAGGAACAACATGTTTTGTAGGCAAAAAGGCTACG
AGCCGGGTGATTTTCTGAAGCACCGTTCGCCACCGGGCGGACAGAATTTC
GACAGCGGCGCCGCCAGCTGCAGAAGAGGCAGCGTCGGCGGCGCCATTAG
TGCCAGGAAGGGTGGCGCCCGGTCTGCTAAGGCCGCCGTCATGGCCGCCG
AATCGCGCCGAAAAGTACACCAGCACTTGTAG
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