mRNA_Ecto-sp13_S_contig7726.18962.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7726.18962.1
Unique NamemRNA_Ecto-sp13_S_contig7726.18962.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7726.18962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7726contigEcto-sp13_S_contig7726:5419..5803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size385
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464043.1838608-UTR-Ecto-sp13_S_contig7726:5418..54761681464043.1838608-UTR-Ecto-sp13_S_contig7726:5418..5476Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7726 5419..5476 +
1681464043.2127542-UTR-Ecto-sp13_S_contig7726:5776..58031681464043.2127542-UTR-Ecto-sp13_S_contig7726:5776..5803Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7726 5777..5803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464043.2007535-CDS-Ecto-sp13_S_contig7726:5476..57761681464043.2007535-CDS-Ecto-sp13_S_contig7726:5476..5776Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7726 5477..5776 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7726.18962.1prot_Ecto-sp13_S_contig7726.18962.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7726 5477..5776 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7726.18962.1

>prot_Ecto-sp13_S_contig7726.18962.1 ID=prot_Ecto-sp13_S_contig7726.18962.1|Name=mRNA_Ecto-sp13_S_contig7726.18962.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
MTLVFNAVTAVQFPVTTQCTSCHVTRQVTMPPLFLSLVMHAAHAAPRPGL
ARQDNAGWFPRKTSQPQPHFVRQRKRPGLFIASSYQANSECTGTEFSGV*
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mRNA from alignment at Ecto-sp13_S_contig7726:5419..5803+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7726.18962.1 ID=mRNA_Ecto-sp13_S_contig7726.18962.1|Name=mRNA_Ecto-sp13_S_contig7726.18962.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=385bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7726:5419..5803+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCTGTGTTTCGGGAATTGAGGTCGATCCCCGCCCAGCTACCATCAAAGG
CGCACAGGATGACGCTCGTGTTTAATGCCGTTACTGCTGTTCAGTTTCCC
GTCACCACGCAGTGCACTTCATGCCACGTCACGCGCCAGGTTACCATGCC
GCCCCTCTTTCTCTCTCTCGTGATGCATGCGGCACATGCGGCACCACGTC
CGGGACTTGCGCGACAAGACAACGCTGGTTGGTTCCCAAGAAAAACATCA
CAACCACAGCCACACTTCGTCAGACAAAGGAAGAGACCCGGCCTCTTTAT
CGCCTCATCCTATCAAGCAAATTCTGAATGTACCGGGACAGAGTTTTCAG
GAGTTTAATTACGCGGGCGAAGCCCGCCAGTACAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7726:5419..5803+

>mRNA_Ecto-sp13_S_contig7726.18962.1 ID=mRNA_Ecto-sp13_S_contig7726.18962.1|Name=mRNA_Ecto-sp13_S_contig7726.18962.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7726:5419..5803+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGCTCGTGTTTAATGCCGTTACTGCTGTTCAGTTTCCCGTCACCAC
GCAGTGCACTTCATGCCACGTCACGCGCCAGGTTACCATGCCGCCCCTCT
TTCTCTCTCTCGTGATGCATGCGGCACATGCGGCACCACGTCCGGGACTT
GCGCGACAAGACAACGCTGGTTGGTTCCCAAGAAAAACATCACAACCACA
GCCACACTTCGTCAGACAAAGGAAGAGACCCGGCCTCTTTATCGCCTCAT
CCTATCAAGCAAATTCTGAATGTACCGGGACAGAGTTTTCAGGAGTTTAA
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