mRNA_Ecto-sp13_S_contig7714.18954.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig7714.18954.1
Unique Name	mRNA_Ecto-sp13_S_contig7714.18954.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig7714.18954.1 vs. uniprot
Match: A0A6H5KJB2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB2_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 3.580e-15
Identity = 42/48 (87.50%), Postives = 44/48 (91.67%), Query Frame = 1

Query: 1012 VREFRARAMRYLFGHDHDEYEENDSGRGAGETIEAFARRCLTESKRIT 1155
            +RE RAR M YLFGHDHDE+EENDSGRGAGETIEAFARRCL ESKRIT
Sbjct:  784 LRELRARTMWYLFGHDHDEHEENDSGRGAGETIEAFARRCLAESKRIT 831

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig7714.18954.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig7714.18954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5KJB2_9PHAE	3.580e-15	87.50	Reverse transcriptase domain-containing protein n=...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig7714	contig	Ecto-sp13_S_contig7714:2902..5667 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	1158
Hectar predicted targeting category	other localisation
Exons	5
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-22_002040.1
Cds size	1158

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464042.5419173-CDS-Ecto-sp13_S_contig7714:2901..3345	1681464042.5419173-CDS-Ecto-sp13_S_contig7714:2901..3345	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig7714 2902..3345 +
1681464042.5534523-CDS-Ecto-sp13_S_contig7714:3856..4087	1681464042.5534523-CDS-Ecto-sp13_S_contig7714:3856..4087	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig7714 3857..4087 +
1681464042.5661626-CDS-Ecto-sp13_S_contig7714:4562..4720	1681464042.5661626-CDS-Ecto-sp13_S_contig7714:4562..4720	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig7714 4563..4720 +
1681464042.586846-CDS-Ecto-sp13_S_contig7714:4953..5131	1681464042.586846-CDS-Ecto-sp13_S_contig7714:4953..5131	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig7714 4954..5131 +
1681464042.6037548-CDS-Ecto-sp13_S_contig7714:5520..5667	1681464042.6037548-CDS-Ecto-sp13_S_contig7714:5520..5667	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig7714 5521..5667 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig7714.18954.1	prot_Ecto-sp13_S_contig7714.18954.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig7714 2902..5667 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig7714:2902..5667+
coding sequence from alignment at Ecto-sp13_S_contig7714:2902..5667+

protein sequence of mRNA_Ecto-sp13_S_contig7714.18954.1

>prot_Ecto-sp13_S_contig7714.18954.1 ID=prot_Ecto-sp13_S_contig7714.18954.1|Name=mRNA_Ecto-sp13_S_contig7714.18954.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=386bp
MPRGGLTLRDRHRSAGSNGLHRQQTERPSSGRNPEVNAPSAKDADGLCEP
DENLKDRAALGVSHGGLEVRKDARETCAEGQTSMSRERTEIGPVYSRWHE
IKESSLLANAWREKAEEVVMQTTGCGAKVTSSTDCKRACYPPQWDYFRDR
RREPIDRSKITVPQSLIGRVSADAAMERLKVPPTITTCWQTSCTGETPRK
VAGPSARRDTRSSTTGRVSAYLSIKAEQIRSRRDHERWLLRVASGLHTPT
QDPLRLAEDCLESTICLTGNTQRQLGTSPPPGGCADSNHEKLDHLNILEP
HESEADERAAAERREFLSCAHLEGLVDSARRLLEDEAVREFRARAMRYLF
GHDHDEYEENDSGRGAGETIEAFARRCLTESKRIT*

mRNA from alignment at Ecto-sp13_S_contig7714:2902..5667+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig7714.18954.1 ID=mRNA_Ecto-sp13_S_contig7714.18954.1|Name=mRNA_Ecto-sp13_S_contig7714.18954.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2766bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7714:2902..5667+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGCGTGGCGGACTAACGCTACGAGACAGACACAGAAGTGCTGGTTC
GAACGGTCTCCACAGGCAGCAAACAGAGCGCCCTTCCAGCGGGAGGAATC
CCGAGGTTAATGCTCCTTCCGCCAAGGACGCCGATGGGCTTTGCGAGCCT
GACGAAAATCTTAAGGATCGCGCGGCTCTAGGAGTTTCCCACGGAGGGCT
AGAGGTCCGAAAAGATGCGCGTGAAACATGCGCGGAAGGTCAAACGTCAA
TGTCGAGGGAAAGAACTGAGATTGGTCCAGTGTATTCGCGTTGGCATGAG
ATCAAGGAGAGTTCGTTGCTCGCGAACGCATGGAGAGAAAAGGCCGAGGA
GGTTGTGATGCAGACAACGGGTTGCGGGGCCAAAGTTACCTCTTCCACCG
ACTGCAAGAGAGCATGTTACCCCCCGCAATGGGACTACTTTCGGGTACGA
AGAGAAGGGAGCAGGTAACGTGCGTCAGCCGTGAATCGCCTATCGGTTCA
TGTCGAGAGTTGACTCCCCTGTACTCTGTTGACGTTGGTCACTGAATTTG
CACGTGAGGTTACGGGGATGCCACCTTTGTTGAAAGACGAAATGTAGATC
GCAGTGTCCACTTGTCACGCGCAGTGGCCACTTGTCAGACCTAGCTGCCA
AAAGATGCTCTCAACACGCCTTTTGTAGGGGAATCCCTGCTCAGTGTTTG
CTAGATATGGTGGGTTGCTCTCGTGTTTTCTCTGGCACCGTTGCCACCCA
CGCTTCGTGCTTCTGGCGTGATTGTCGCTCCGGCCTACACCCTTGTGTTT
TGGGCACCATTCCCCCACCTTCTGCCCCCTCGCTCGAGCACGAGTTGCTC
TGCTTCCGCGACATTTTGAGGAACTAAGCGTACGATTGACGACACGTTAA
GATCCATCCCCCCGTCATCTAAATTCTGCATTGATGCCGGACCCTACACA
CGCAGGATCGACGACGGGAACCAATTGACCGGTCCAAAATAACAGTACCG
CAGTCTCTGATCGGGAGGGTTAGCGCCGACGCAGCAATGGAGAGATTGAA
AGTTCCACCCACGATTACGACGTGTTGGCAAACCAGCTGTACCGGGGAAA
CTCCGAGAAAAGTGGCCGGGCCTTCGGCGCGAAGAGACACCCGGTCATCA
ACGACAGGAAGAGTTTCTGCTTACCTTTCCATCAAGGTCAGAGAGGTTGA
CATGTCGAACCTTTGCGTCGTGTTTGAGGAAGTTGCACTTAGAGTCATCG
AATGGGCGAATCACGTGGCGGGAGTGTTTCGGCCGGAACGTGGAGAAGGC
GCAGGCAAAACGGTCAGGTGTGTGTGTGATATCGTATCAAGGTGATGTGG
CTCTACCTTAATGGACTGTCGGAATCACGGCCCCGCCCATCTCAAGGCCG
CTAAGTGCCCTATTGTTCAATATTGTAGAACTCCGTCGAAATTACCATGC
CTTGGAGTGCGTAAAGGCTCCAACCTTCGTGTCCAGACTGGACCAAGGAT
TCTAAATGTCCGAGACTGCTGAGTATTTCGGAAAATGGCGGTTCCCACTG
CACCTTCTGTTGTTCCTCCGCCTGGTTCGTCCTCGTGACGCAAATCAAAT
CCCATATTGGATCAAGGCTGAACGTCTGCTCTATCTCGTGATTTTGTGTT
TTGTACTTCAGGCGGAGCAAATTCGAAGTCGTCGCGACCACGAGCGTTGG
TTGTTAAGGGTTGCTAGTGGACTCCACACACCCACTCAAGACCCGCTTAG
GCTCGCCGAGGATTGCCTAGAAAGTACCATTTGTCTAACGGGAAACACCC
AAAGGCAGCTGGGAACAAGGTAACCGAGAGTCCTGCGGAATTTCTAGCCG
TTACATTCGAACACAGGAACCGCCTTGCATGCGCTGGCCACCAGGTGTGT
TCGGGAGAACCGGCTTGGCCTTGGCGGGCCGTAAGCACGCGCTCTCCAAA
CTGGGTCTCGAAATGTCAGCAAGGATCGGCCTAACATAATTCCCAAGCAT
GATGTTCTCTGTTCTCTCGCCTTTTTCGGTCTCCGCTCCTCGTGCCAAGA
AGCCCTCCGCCTGGTGGCTGCGCGGATTCAAACCACGAGAAGTTGGACCA
CCTCAACATTCTTGAGCCACATGAGAGCGAAGCCGATGAACGAGCCGCCG
CCGAACGGAGAGAATTCCTGTCGTGTGCACACCTGGAAGGACTCGTCGAC
TCCGCACGGCGGCTGCTGGAGGACGAAGCGGTGAGCACGGCAGCGGATGC
TTGTCCTCGACGGCCACCGGTTTCTGTTTCTGAGCGAAGCCAAGCTGGCG
TGAAGGCCTGGTCGTCGTATCCGACTTTCTTGGTCACAATTCGCACTCAA
CAACGTCTGCCTATGTGTTTTGGTACGCTCCTCTCACCCTACTGTAGACC
CACCACTTAGGTTGGCCGTTTCATGGGCCACTGGGGCTAAGTTGCAGTTG
CCGATGATGGAAGGAGCGGAAGGCACCAAGCCACAACTACTACGTACGCC
TTATGCCAGAAAGTTTTAAAGAAACTTGCATGGAAAAAAACTAGACCGGC
GAGAGACTGACGTTGTATAATACCGTCTGAGTCGCGCAGAATCACACGGC
GCGGGACGGCGTAGTGGAGGTGCGGGAATTTCGGGCTCGAGCGATGCGAT
ACCTTTTCGGCCACGACCATGACGAGTACGAGGAGAACGACTCAGGGCGA
GGGGCTGGAGAGACAATAGAAGCCTTTGCTCGGCGCTGTTTGACTGAAAG
CAAGAGGATTACCTAG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7714:2902..5667+

>mRNA_Ecto-sp13_S_contig7714.18954.1 ID=mRNA_Ecto-sp13_S_contig7714.18954.1|Name=mRNA_Ecto-sp13_S_contig7714.18954.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1158bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7714:2902..5667+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGCGTGGCGGACTAACGCTACGAGACAGACACAGAAGTGCTGGTTC
GAACGGTCTCCACAGGCAGCAAACAGAGCGCCCTTCCAGCGGGAGGAATC
CCGAGGTTAATGCTCCTTCCGCCAAGGACGCCGATGGGCTTTGCGAGCCT
GACGAAAATCTTAAGGATCGCGCGGCTCTAGGAGTTTCCCACGGAGGGCT
AGAGGTCCGAAAAGATGCGCGTGAAACATGCGCGGAAGGTCAAACGTCAA
TGTCGAGGGAAAGAACTGAGATTGGTCCAGTGTATTCGCGTTGGCATGAG
ATCAAGGAGAGTTCGTTGCTCGCGAACGCATGGAGAGAAAAGGCCGAGGA
GGTTGTGATGCAGACAACGGGTTGCGGGGCCAAAGTTACCTCTTCCACCG
ACTGCAAGAGAGCATGTTACCCCCCGCAATGGGACTACTTTCGGGATCGA
CGACGGGAACCAATTGACCGGTCCAAAATAACAGTACCGCAGTCTCTGAT
CGGGAGGGTTAGCGCCGACGCAGCAATGGAGAGATTGAAAGTTCCACCCA
CGATTACGACGTGTTGGCAAACCAGCTGTACCGGGGAAACTCCGAGAAAA
GTGGCCGGGCCTTCGGCGCGAAGAGACACCCGGTCATCAACGACAGGAAG
AGTTTCTGCTTACCTTTCCATCAAGGCGGAGCAAATTCGAAGTCGTCGCG
ACCACGAGCGTTGGTTGTTAAGGGTTGCTAGTGGACTCCACACACCCACT
CAAGACCCGCTTAGGCTCGCCGAGGATTGCCTAGAAAGTACCATTTGTCT
AACGGGAAACACCCAAAGGCAGCTGGGAACAAGCCCTCCGCCTGGTGGCT
GCGCGGATTCAAACCACGAGAAGTTGGACCACCTCAACATTCTTGAGCCA
CATGAGAGCGAAGCCGATGAACGAGCCGCCGCCGAACGGAGAGAATTCCT
GTCGTGTGCACACCTGGAAGGACTCGTCGACTCCGCACGGCGGCTGCTGG
AGGACGAAGCGGTGCGGGAATTTCGGGCTCGAGCGATGCGATACCTTTTC
GGCCACGACCATGACGAGTACGAGGAGAACGACTCAGGGCGAGGGGCTGG
AGAGACAATAGAAGCCTTTGCTCGGCGCTGTTTGACTGAAAGCAAGAGGA
TTACCTAG