prot_Ecto-sp13_S_contig7702.18943.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7702.18943.1
Unique Nameprot_Ecto-sp13_S_contig7702.18943.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length568
Homology
BLAST of mRNA_Ecto-sp13_S_contig7702.18943.1 vs. uniprot
Match: D8LI19_ECTSI (Circadian RNA-binding protein CHLAMY 1 subunit C1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI19_ECTSI)

HSP 1 Score: 406 bits (1044), Expect = 1.250e-132
Identity = 302/543 (55.62%), Postives = 307/543 (56.54%), Query Frame = 0
Query:    1 MWMDQNFPDGVMRKLHIHGNKQQVEAAVAEVEFLMKSAPVNTPRPGKMGPNQLPHGGGLPPGHPDLNYSKKTIKCPHALVGYLIGKKGAMIKHIKSMSNANVELFQGYPDGHPRDVFITGTAEEVDLAATLVDEVIASGTASDNTAXXXXXXXXAGIGRAPSFASGPVLGFNPSSALSQARNLPLTLIGSSTPPSVGTPSXXXXXXXXXXXITHNFGDLGGLGNGGSAVAGMNGHPASAAATQMAIDNLHRPXXXXXXXXXXXXXXXXXXXXXGMMGAHEEYLAQQEALARRHQIQSPILTVDWQQQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQQQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNSVEELLAKAGQMHLLPNFLEQEFDVNAIVLMEEQDFDEIKARSFIPFGPQKKIQKAIREATANMERAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGADAAAASDDEPRAADLCAICMENPIEVTFVGCGHFICCVTCGNR 543
            MWMDQNFPDGVMRKLHIHGNKQQVEAA+ EVEFLMKSAPVNTPRPGKMGP QLPHGGGLPPGHPDLNYSKKTIKCPHALVGYLIGKKGAMIKHIKSMSNANVELFQGYPDGHPRDVFITGTA+EVDLAATLVDEVIASGTASD+TAXXXXXXXX GIGRA SFASGPVLGFNPSSALSQ                                                                                                                                                                                                                          ELLAKAGQMHLLPNFLEQEFDVNAIVLMEEQDFDEIK    IPFGPQKKIQKAIREATANMERAAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         ++DEPRAADLCAICMENPIEVTFVGCGHFICCVTCGNR
Sbjct:  230 MWMDQNFPDGVMRKLHIHGNKQQVEAAIDEVEFLMKSAPVNTPRPGKMGPKQLPHGGGLPPGHPDLNYSKKTIKCPHALVGYLIGKKGAMIKHIKSMSNANVELFQGYPDGHPRDVFITGTADEVDLAATLVDEVIASGTASDSTAXXXXXXXX-GIGRALSFASGPVLGFNPSSALSQ--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ELLAKAGQMHLLPNFLEQEFDVNAIVLMEEQDFDEIK----IPFGPQKKIQKAIREATANMERAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------TEDEPRAADLCAICMENPIEVTFVGCGHFICCVTCGNR 540          
BLAST of mRNA_Ecto-sp13_S_contig7702.18943.1 vs. uniprot
Match: A0A6H5KMM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMM6_9PHAE)

HSP 1 Score: 295 bits (756), Expect = 8.990e-87
Identity = 150/159 (94.34%), Postives = 153/159 (96.23%), Query Frame = 0
Query:    1 MWMDQNFPDGVMRKLHIHGNKQQVEAAVAEVEFLMKSAPVNTPRPGKMGPNQLPHGGGLPPGHPDLNYSKKTIKCPHALVGYLIGKKGAMIKHIKSMSNANVELFQGYPDGHPRDVFITGTAEEVDLAATLVDEVIASGTASDNTAXXXXXXXXAGIGR 159
            MWMDQNFPDGVMRKLHIHGNKQQVEAA+AEVEFLMKSAPVNTPRP +MGP QLPHGGGLPPGHPDLNYSKKTIKCPHALVGYLIGKKGAMIKHIKSMSNANVELFQGYPDGHPRDVFITGTAEEVDLAATLVDEVIASGTASDNTA XXXX   AG+GR
Sbjct:  664 MWMDQNFPDGVMRKLHIHGNKQQVEAAIAEVEFLMKSAPVNTPRPARMGPKQLPHGGGLPPGHPDLNYSKKTIKCPHALVGYLIGKKGAMIKHIKSMSNANVELFQGYPDGHPRDVFITGTAEEVDLAATLVDEVIASGTASDNTAAXXXXA--AGVGR 820          
BLAST of mRNA_Ecto-sp13_S_contig7702.18943.1 vs. uniprot
Match: A0A7S2G2V8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G2V8_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.300e-10
Identity = 45/137 (32.85%), Postives = 68/137 (49.64%), Query Frame = 0
Query:    3 MDQNFPDGVMRKLHIHGNKQQVEAAVAEVEFLMKSAPVNTPRPGKMGPNQLPHGGGLPPGHPDLNYSKKTIKCPHALVGYLIGKKGAMIKHIKSMSNANVELFQGYPDGHPRDVFITGTAEEVDLAATLVDEVIASG 139
            +DQN+P+G+ RK+ + G+  QV  AVA V   +                   HG       P    + +TI CP  LVG +IG+ G  I  ++  S A +++ Q  P+G P  V I GT + V++A  LV++VI  G
Sbjct:   60 IDQNYPEGMPRKITVSGSILQVSQAVAMVNQKIND-----------------HG-------PSTGGTTQTIDCPKNLVGRVIGRGGETINDLQQRSGARIQILQDVPEGTPCKVTINGTPQTVEVALELVNDVIQHG 172          
BLAST of mRNA_Ecto-sp13_S_contig7702.18943.1 vs. uniprot
Match: A0A7S0KCC2_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KCC2_MICPS)

HSP 1 Score: 68.9 bits (167), Expect = 8.400e-9
Identity = 49/144 (34.03%), Postives = 71/144 (49.31%), Query Frame = 0
Query:    3 MDQNFPDGVMRKLHIHGNKQQVEAAVAEVEFLMKSAPVNTPRPGKMGPNQLPHGGGLPPGHPDLNYSKKTIKCPHALVGYLIGKKGAMIKHIKSMSNANVELFQGYPDGHPRDVFITGTAEEVDLAATLVDEVIASGTASDNTA 146
            +DQNFP+GV RK+ I G    V+ A   VE L+K  PV   R G +GP Q  H                 ++CP  +VG +I + G  IK ++S + A +++ Q      P  V ITG    V+ AA  V +VI  G+ +  +A
Sbjct:  102 VDQNFPEGVPRKISISGPAGCVDIATKLVEDLLKGGPV---RSGSVGPGQAQH----------------LVECPKEMVGRVISRGGETIKGLQSQTGARIQIDQ---TTSPCTVTITGNPYCVEAAARAVTDVINGGSTAPYSA 223          
BLAST of mRNA_Ecto-sp13_S_contig7702.18943.1 vs. uniprot
Match: A0A7S3UBS0_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UBS0_9CHLO)

HSP 1 Score: 65.1 bits (157), Expect = 1.090e-7
Identity = 40/138 (28.99%), Postives = 69/138 (50.00%), Query Frame = 0
Query:    3 MDQNFPDGVMRKLHIHGNKQQVEAAVAEVEFLMKSAPVNTPRPGKMGPNQLPHGGGLPPGHPDLNYSKKTIKCPHALVGYLIGKKGAMIKHIKSMSNANVELFQGYPDGHPRDVFITGTAEEVDLAATLVDEVIASGT 140
            +DQ++P+G+ RK+ + G K++VE  V  V  L++  P  T +     P    H                 ++CP A +G +IG+ G  IK +++ S A +++ Q      P  + I+G  + V LAA +V ++I  GT
Sbjct:  106 IDQDYPEGMPRKITVKGKKEKVERGVKLVHDLIRGGPGATAQVLAAVPGGTTH----------------VVECPKATIGRVIGRGGETIKRLQATSGARIQINQ---TEEPMKITISGHQDCVQLAAAMVADIIGGGT 224          
BLAST of mRNA_Ecto-sp13_S_contig7702.18943.1 vs. uniprot
Match: A0A3M7KQ00_AUXPR (WW domain-containing protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7KQ00_AUXPR)

HSP 1 Score: 64.3 bits (155), Expect = 2.970e-7
Identity = 34/94 (36.17%), Postives = 55/94 (58.51%), Query Frame = 0
Query:   70 KKTIKCPHALVGYLIGKKGAMIKHIKSMSNANVELFQGYPDGHPRDVFITGTAEEVDLAATLVDEVIASGTASDNTAXXXXXXXXAGIGRAPSF 163
            ++T++CP  +VG +IG+ G  I+ ++S S A++ + Q +P+G PR V I+GTA+    A  L+ E+I  G A    A         GIG++ SF
Sbjct:  238 QETMECPAGIVGRIIGRGGETIRALQSASQAHITVDQNFPEGQPRKVIISGTADAARRAVALIQELIV-GEAGSAQAIIQRVCAENGIGKSHSF 330          
BLAST of mRNA_Ecto-sp13_S_contig7702.18943.1 vs. uniprot
Match: A0A7S0S6K2_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0S6K2_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 3.460e-7
Identity = 42/126 (33.33%), Postives = 62/126 (49.21%), Query Frame = 0
Query:    3 MDQNFPDGVMRKLHIHGNKQQVEAAVAEVEFLMKSAPVNTPRPGKMGPNQLPHGGGLPPGHPDLNYSKKTIKCPHALVGYLIGKKGAMIKHIKSMSNANVELFQGYPDGHPRDVFITGTAEEVDLA 128
            +DQNFPDG+ RK+ I G    VE A   VE L+K  PV +                + PG      +++ ++CP  +VG +IG+ G  IK ++S + A +++ Q      P  V ITG    VD A
Sbjct:   23 IDQNFPDGIPRKISISGPVGCVEIASKLVEDLLKGGPVGSTS--------------VVPGQ-----AQQLVECPKEMVGRVIGRGGETIKGLQSQTGARIQIDQA---ASPCTVTITGDPYCVDAA 126          
BLAST of mRNA_Ecto-sp13_S_contig7702.18943.1 vs. uniprot
Match: A0A061RZW2_9CHLO (Far upstream element-binding protein n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RZW2_9CHLO)

HSP 1 Score: 64.3 bits (155), Expect = 3.740e-7
Identity = 44/144 (30.56%), Postives = 69/144 (47.92%), Query Frame = 0
Query:    3 MDQNFPDGVMRKLHIHGNKQQVEAAVAEVEFLMKSAPVNTPRPGKMGPNQL------PHGGGLPPGHPDLNYSKKTIKCPHALVGYLIGKKGAMIKHIKSMSNANVELFQGYPDGHPRDVFITGTAEEVDLAATLVDEVIASGT 140
            +DQNFP+GV R++HI G    V+  +  V  L+   P +         N +       HGGG+           +T++CP  +VG +IGK G  IK +++ S A +++ Q      P  V ITG  + V  A   V ++I  G+
Sbjct:  276 IDQNFPEGVDRQVHIQGRPDAVDRGLKMVTELIAGGPGSA--------NDVIQKVIQKHGGGI----------SQTLQCPKTMVGRVIGKGGETIKALQNASGARIQIDQST---EPMTVTITGAPDAVARAEASVTDIINGGS 398          
BLAST of mRNA_Ecto-sp13_S_contig7702.18943.1 vs. uniprot
Match: A0A250X1Z5_9CHLO (WW domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X1Z5_9CHLO)

HSP 1 Score: 63.5 bits (153), Expect = 6.150e-7
Identity = 30/76 (39.47%), Postives = 51/76 (67.11%), Query Frame = 0
Query:   71 KTIKCPHALVGYLIGKKGAMIKHIKSMSNANVELFQGYPDGHPRDVFITGTAEEVDLAATLVDEVIAS-GTASDNT 145
            + + CP  +VG +IG+ G  I+ +++ S A++ + Q +P+GHPR+V I+GT + V+ A  +V+E+I S G AS  T
Sbjct:  212 RKVSCPAHIVGRIIGRGGETIRSLQTASTAHIVINQDFPEGHPREVLISGTPDAVNRAHEMVNELINSEGAASTQT 287          
BLAST of mRNA_Ecto-sp13_S_contig7702.18943.1 vs. uniprot
Match: A0A7S2QUF9_9CHLO (Hypothetical protein n=2 Tax=Chlamydomonas chlamydogama TaxID=225041 RepID=A0A7S2QUF9_9CHLO)

HSP 1 Score: 61.2 bits (147), Expect = 3.170e-6
Identity = 25/68 (36.76%), Postives = 47/68 (69.12%), Query Frame = 0
Query:   71 KTIKCPHALVGYLIGKKGAMIKHIKSMSNANVELFQGYPDGHPRDVFITGTAEEVDLAATLVDEVIAS 138
            +++ CP  +VG +IG+ G  I+ +++ S A++ + Q +P+GHPR V I+G  + V+ A  +V+E+I+S
Sbjct:  200 RSVSCPAGIVGRIIGRGGETIRSLQTASGAHIMVNQNFPEGHPRQVDISGKPDAVERAFNMVNELISS 267          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7702.18943.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LI19_ECTSI1.250e-13255.62Circadian RNA-binding protein CHLAMY 1 subunit C1 ... [more]
A0A6H5KMM6_9PHAE8.990e-8794.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2G2V8_9STRA2.300e-1032.85Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0KCC2_MICPS8.400e-934.03Hypothetical protein (Fragment) n=2 Tax=Micromonas... [more]
A0A7S3UBS0_9CHLO1.090e-728.99Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
A0A3M7KQ00_AUXPR2.970e-736.17WW domain-containing protein n=2 Tax=Auxenochlorel... [more]
A0A7S0S6K2_9CHLO3.460e-733.33Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A061RZW2_9CHLO3.740e-730.56Far upstream element-binding protein n=2 Tax=Tetra... [more]
A0A250X1Z5_9CHLO6.150e-739.47WW domain-containing protein n=1 Tax=Chlamydomonas... [more]
A0A7S2QUF9_9CHLO3.170e-636.76Hypothetical protein n=2 Tax=Chlamydomonas chlamyd... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 444..464
NoneNo IPR availableCOILSCoilCoilcoord: 309..329
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 514..559
e-value: 1.8E-7
score: 30.9
NoneNo IPR availablePANTHERPTHR23202WASP INTERACTING PROTEIN-RELATEDcoord: 114..507
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 68..132
score: 12.496
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 509..558
IPR004087K Homology domainSMARTSM00322kh_6coord: 67..137
e-value: 2.2E-12
score: 57.1
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 72..133
e-value: 8.2E-12
score: 44.8
IPR013761Sterile alpha motif/pointed domain superfamilyGENE3D1.10.150.50coord: 393..466
e-value: 6.7E-11
score: 43.8
IPR013761Sterile alpha motif/pointed domain superfamilySUPERFAMILY47769SAM/Pointed domaincoord: 387..458
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 500..566
e-value: 3.7E-9
score: 37.9
IPR036612K Homology domain, type 1 superfamilyGENE3D3.30.1370.10coord: 63..161
e-value: 7.1E-14
score: 53.6
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 69..137

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7702contigEcto-sp13_S_contig7702:1469..7208 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7702.18943.1mRNA_Ecto-sp13_S_contig7702.18943.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7702 1469..7208 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7702.18943.1 ID=prot_Ecto-sp13_S_contig7702.18943.1|Name=mRNA_Ecto-sp13_S_contig7702.18943.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=568bp
MWMDQNFPDGVMRKLHIHGNKQQVEAAVAEVEFLMKSAPVNTPRPGKMGP
NQLPHGGGLPPGHPDLNYSKKTIKCPHALVGYLIGKKGAMIKHIKSMSNA
NVELFQGYPDGHPRDVFITGTAEEVDLAATLVDEVIASGTASDNTAAAAA
AAAAAGIGRAPSFASGPVLGFNPSSALSQARNLPLTLIGSSTPPSVGTPS
VASVGTPSVSSITHNFGDLGGLGNGGSAVAGMNGHPASAAATQMAIDNLH
RPPPPPGMGGPAAGAGAPPHHPPGMMGAHEEYLAQQEALARRHQIQSPIL
TVDWQQQHQQQHQQQHQQQQHQQQQQQQQHQHQQQQQHQQQQQHQHQHQQ
QQPPPPPPPRKAAAPAAAAAPTAAPPAAAAAANTAPPPPPPPFNSVEELL
AKAGQMHLLPNFLEQEFDVNAIVLMEEQDFDEIKARSFIPFGPQKKIQKA
IREATANMERAAAAASGATAAPAATGSDSGVGSGGGSGGGSGGGDGGVGA
DAAAASDDEPRAADLCAICMENPIEVTFVGCGHFICCVTCGNRQVGSPCP
LPECRIMVERAVQPYTG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR004088KH_dom_type_1
IPR013761SAM/pointed_sf
IPR013083Znf_RING/FYVE/PHD
IPR036612KH_dom_type_1_sf