mRNA_Ecto-sp13_S_contig77.18935.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig77.18935.1
Unique NamemRNA_Ecto-sp13_S_contig77.18935.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig77.18935.1 vs. uniprot
Match: D7FJ17_ECTSI (DUF5745 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ17_ECTSI)

HSP 1 Score: 973 bits (2515), Expect = 0.000e+0
Identity = 529/553 (95.66%), Postives = 536/553 (96.93%), Query Frame = 1 
Query:  109 MSGASPSPPDSSLDEATEEGFILASINTLLNRVGISAKPINSFEELRKSASSMFVAIFEAMFQVRQRGVVRKPAHVHNYVHNAQMVVDALAGPILNMDLSHITGEAIVRGDTVAIRNLVDIFMGISEVVIKRQARPDGGPAAQEFWAGSRRRLKARQGQPQLQQQQNQAQHHGTNSHPPPTASRFSRHGQQHATRVSDTGRGDREHGLRVRPPRHEGLQESDHDGLDESLGRSELSPFRGETELQSSPSGEALTARDILEAHRMFEERGGGFERREDVDAQQGPLRGEQLGMDRRVNRQEEDREMKYRRYYQRVLKDRLTALRKRELADARKQRFAHQNATHVAKVRQIKKERLEEKLRLARLSQRLHLQDEGRGRLSDLYKKILTALHRQRKEDDREDAARLKALHLAWQAQSDDLEKFFKERVELIVEHEQGSGRERAQTMASEERELSDLFRRAEMDYEARLSSQLQQQAVEAAAEERYHAEVQHAYKELLHMEDWSGASRDRFLGVRPNTAFEQRLKQAGQSNNNYTARSRMKKERKHRDLNRAYGRAT 1767
            MSGASPSPPDSSLDEATEEGFILASINTLLNRVGISAKPINSFEELRKSASSMFVAIFEAMFQVRQRGVVRKPAHVHNYVHNAQMVVDALAGPILNMDLSHITGEAIVRGDTVAIRNLVDIFMGISEVVIKRQARPDGGPAAQEFWAGSRRRLKARQGQPQLQQQ  QAQHHGT+SHPPPTASRFSRH +QHATRVSDTGRGDREHGL VRPPRHEGLQESDHDGLDESLGRSELSPFRGETEL+SSPSGEALTARDILEAHRMFEER G FER EDVD QQGPLRGEQLGMDRRVNRQEEDREMKYRRYYQRVLKDRLTALRKRELADARKQRFAHQNATHVAKVRQIKKERLEEKLRLARLSQRLHLQDEGRGRLSDLYKKILTALHRQRKEDDREDAARLKALHLAWQAQSDDLEKFFKERVELIVEHEQGSGRERAQTMA EERELSDLFRRAEMDYEARLSSQL+QQAVEAAAEERYHAEVQHAYKELLHMEDWSGASRDRFLGVRPNTAFEQRLKQ     +  TARSRMKKERKHR+LNRAYGR +
Sbjct:    1 MSGASPSPPDSSLDEATEEGFILASINTLLNRVGISAKPINSFEELRKSASSMFVAIFEAMFQVRQRGVVRKPAHVHNYVHNAQMVVDALAGPILNMDLSHITGEAIVRGDTVAIRNLVDIFMGISEVVIKRQARPDGGPAAQEFWAGSRRRLKARQGQPQLQQQXXQAQHHGTSSHPPPTASRFSRH-RQHATRVSDTGRGDREHGLGVRPPRHEGLQESDHDGLDESLGRSELSPFRGETELKSSPSGEALTARDILEAHRMFEEREGVFERPEDVDVQQGPLRGEQLGMDRRVNRQEEDREMKYRRYYQRVLKDRLTALRKRELADARKQRFAHQNATHVAKVRQIKKERLEEKLRLARLSQRLHLQDEGRGRLSDLYKKILTALHRQRKEDDREDAARLKALHLAWQAQSDDLEKFFKERVELIVEHEQGSGRERAQTMALEERELSDLFRRAEMDYEARLSSQLEQQAVEAAAEERYHAEVQHAYKELLHMEDWSGASRDRFLGVRPNTAFEQRLKQVRVRAD--TARSRMKKERKHRNLNRAYGRGS 550
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BLAST of mRNA_Ecto-sp13_S_contig77.18935.1 vs. uniprot
Match: A0A6H5KDB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDB6_9PHAE)

HSP 1 Score: 536 bits (1380), Expect = 2.070e-186
Identity = 298/338 (88.17%), Postives = 304/338 (89.94%), Query Frame = 1 
Query:  682 HATRVSDTGRGDREHGLRVRPPRHEGLQESDHDGLDESLGRSELSPFRGETELQSSPSGEALTARDILEAHRMFEERGGGFERREDVDAQQGPLRGEQLGMDRRVNRQEEDREMKYRRYYQRVLKDRLTALRKRELADARKQRFAHQNATHVAKVRQIKKERLEEKLRLARLSQRLHLQDEGRGRLSDLYKKILTALHRQRKEDDREDAARLKALHLAWQAQSDDLEKFFKERVELIVEHEQGSGRERAQTMASEERELSDLFRRAEMDYEARLSSQLQQQAVEAAAEERYHAEVQHAYKELLHMEDWSGASRDRFLGVRPNTAFEQRLKQAGQSNNN 1695
            HATRVSDTGRGDREHG RVRPP HEGLQESDHDGLDESLGRSELSPFRGETEL+SSPSGEALTARDILEAHRMFEE+G GFERREDVD QQGPLRGEQLG+DRRV+RQEEDREMKYRRYYQRVLKDRLTALRK                        IKKERLEEKLRLARLSQRLHLQDEGRGRLSDLYKKILTALHRQRKEDDREDAARLKALHLAWQAQSDDLEKFFKERVELIVEHEQGSGRERAQTMASEERELSDLFRRAEMDYEARLSSQ    AVEAAAEERYHAEVQHAYKELL MEDWSGASRDRFLGVRPNTAFEQRLKQA +S+NN
Sbjct:    2 HATRVSDTGRGDREHGFRVRPPAHEGLQESDHDGLDESLGRSELSPFRGETELKSSPSGEALTARDILEAHRMFEEQGEGFERREDVDVQQGPLRGEQLGLDRRVSRQEEDREMKYRRYYQRVLKDRLTALRK------------------------IKKERLEEKLRLARLSQRLHLQDEGRGRLSDLYKKILTALHRQRKEDDREDAARLKALHLAWQAQSDDLEKFFKERVELIVEHEQGSGRERAQTMASEERELSDLFRRAEMDYEARLSSQ----AVEAAAEERYHAEVQHAYKELLQMEDWSGASRDRFLGVRPNTAFEQRLKQASESSNN 311
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BLAST of mRNA_Ecto-sp13_S_contig77.18935.1 vs. uniprot
Match: A0A6H5KJC8_9PHAE (DUF5745 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC8_9PHAE)

HSP 1 Score: 255 bits (651), Expect = 1.720e-78
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1 
Query:  109 MSGASPSPPDSSLDEATEEGFILASINTLLNRVGISAKPINSFEELRKSASSMFVAIFEAMFQVRQRGVVRKPAHVHNYVHNAQMVVDALAGPILNMDLSHITGEAIVRGDTVAIRNLVDIFMGISEVVIKRQ 507
            MSGASPSPPDSSLDEATEEGFILASINTLLNRVGISAKPINSFEELRKSASSMFVAIFEAMFQVRQRGVVRKPAHVHNYVHNAQMVVDALAGPILNMDLSHITGEAIVRGDTVAIRNLVDIFMGISEVVIKRQ
Sbjct:    1 MSGASPSPPDSSLDEATEEGFILASINTLLNRVGISAKPINSFEELRKSASSMFVAIFEAMFQVRQRGVVRKPAHVHNYVHNAQMVVDALAGPILNMDLSHITGEAIVRGDTVAIRNLVDIFMGISEVVIKRQ 133
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BLAST of mRNA_Ecto-sp13_S_contig77.18935.1 vs. uniprot
Match: A0A835Z720_9STRA (DUF5745 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z720_9STRA)

HSP 1 Score: 144 bits (364), Expect = 2.510e-37
Identity = 74/125 (59.20%), Postives = 94/125 (75.20%), Query Frame = 1 
Query:  154 ATEEGFILASINTLLNRVGISAKPINSFEELRKSASSMFVAIFEAMFQVRQRGVVRKPAHVHNYVHNAQMVVDALAGPILNMDLSHITGEAIVRGDTVAIRNLVDIFMGISEVVIK-RQARPDGG 525
            A E+  +L  INTLL RVGI AKPI SF E++KSASSMFVAIFE MF+V + G+VRKP  + +YV NAQ+++DAL   IL+++L H+TG A+ RGD  AI NLVDIF GIS++V+K RQ    GG
Sbjct:    6 AAEDEVLLRKINTLLTRVGIPAKPITSFNEVKKSASSMFVAIFEGMFKVTREGIVRKPTQLQDYVRNAQVIIDALDKEILHINLDHVTGAAVARGDAQAIHNLVDIFFGISDMVLKFRQQDSRGG 130
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BLAST of mRNA_Ecto-sp13_S_contig77.18935.1 vs. uniprot
Match: A0A7S4DH09_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DH09_HETAK)

HSP 1 Score: 142 bits (358), Expect = 2.240e-35
Identity = 70/119 (58.82%), Postives = 94/119 (78.99%), Query Frame = 1 
Query:  151 EATEEGFILASINTLLNRVGISAKPINSFEELRKSASSMFVAIFEAMFQVRQRGVVRKPAHVHNYVHNAQMVVDALAGPILNMDLSHITGEAIVRGDTVAIRNLVDIFMGISEVVIKRQ 507
            E +EE  I+A+ N LL  VGI AKPI+SF+EL++ ASSMFVA+FEAMF +R +G++R+P    +YVHNAQMV+DAL+  IL M+L HITG+ IV GD + I+N+VDI +GISEV +KR+
Sbjct:   20 ELSEENVIVANTNELLQAVGIYAKPISSFQELQRIASSMFVAVFEAMFDIRLKGIIREPGSRSDYVHNAQMVIDALSKSILKMNLVHITGDLIVDGDPIGIKNMVDILIGISEVWLKRR 138
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BLAST of mRNA_Ecto-sp13_S_contig77.18935.1 vs. uniprot
Match: A0A2D4CC91_PYTIN (DUF5745 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CC91_PYTIN)

HSP 1 Score: 92.0 bits (227), Expect = 8.080e-18
Identity = 54/145 (37.24%), Postives = 84/145 (57.93%), Query Frame = 1 
Query:  172 ILASINTLLNRVGISAKPINSFEELRKSASSMFVAIFEAMFQVRQRGVVRKPAHVHNYVHNAQMVVDALAGPILN--MDLSHITGEAIVRGDTVAIRNLV-------DIFMGISEVVIKRQARPDGGPAAQEFWAGSRRRLKARQ 579
            +L   N LL+R+G  A+    +++L  S SSM VA++E +FQ R  GVVR P+ V +Y HNAQ+VVDAL+G +L+   D +H++GE++  GD  +I  LV       D+  G  +  + R A  D  P+     + SR  ++ R+
Sbjct:   41 VLLQTNALLDRLGFGARSFEDYDDLVASVSSMSVALYEKLFQFRLEGVVRVPSSVTDYAHNAQLVVDALSGALLDEDFDAAHLSGESLCSGDVDSIAQLVRMLEHIHDVLYGDDDAALSRSAT-DPNPSGSRSKSLSRPSIEERE 184
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BLAST of mRNA_Ecto-sp13_S_contig77.18935.1 vs. uniprot
Match: A0A2R5GFQ7_9STRA (Centrosomal protein of 95 kDa n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GFQ7_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.060e-16
Identity = 57/133 (42.86%), Postives = 83/133 (62.41%), Query Frame = 1 
Query:   76 GGN*EQDSNHTMSGASPSPPDSSLDEATEEGFILASINTLLNRVGISAKPINSFEELRKSASSMFVAIFEAMFQVRQRGVVRKPAHVHNYVHNAQMVVDALAGPILNMDLSHITGEAIVRGDTVAIRNLVDIF 474
            GG+     + T+ G+ P   D +  E      I+   N L  ++ I+ +PI +FEEL+KSASSMFVAIFE +F VR + V+RKP  V +Y+ NA +V+ AL+   L +DLS ++GE I RGD V I +++ IF
Sbjct:   72 GGSRRGPGSATVGGSHPVDEDPAFYE-----HIVQRTNDLFVKLNITTRPIQAFEELQKSASSMFVAIFETLFNVRLKNVIRKPRVVTDYITNANLVMTALSES-LPIDLSFLSGEDIYRGDPVQIHHMLSIF 198
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BLAST of mRNA_Ecto-sp13_S_contig77.18935.1 vs. uniprot
Match: A0A2D4BTL5_PYTIN (DUF5745 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BTL5_PYTIN)

HSP 1 Score: 89.4 bits (220), Expect = 1.400e-15
Identity = 46/108 (42.59%), Postives = 70/108 (64.81%), Query Frame = 1 
Query:  172 ILASINTLLNRVGISAKPINSFEELRKSASSMFVAIFEAMFQVRQRGVVRKPAHVHNYVHNAQMVVDALAGPILN--MDLSHITGEAIVRGDTVAIRNLVDIFMGISE 489
            +L   N LL+R+G  A+    +++L  S SSM VA++E +FQ R  GVVR P+ V +Y HNAQ+VVDAL+G +L+   D +H++GE++  GD  +I  LV +   I +
Sbjct:   41 VLLQTNALLDRLGFGARSFEDYDDLVASVSSMSVALYEKLFQFRLEGVVRVPSSVTDYAHNAQLVVDALSGALLDEDFDAAHLSGESLCSGDVDSIAQLVRMLEHIHD 148
[Close]
BLAST of mRNA_Ecto-sp13_S_contig77.18935.1 vs. uniprot
Match: A0A7S2WBU4_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WBU4_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.610e-15
Identity = 48/101 (47.52%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:  172 ILASINTLLNRVGISAKPINSFEELRKSASSMFVAIFEAMFQVRQRGVVRKPAHVHNYVHNAQMVVDALAGPILNMDLSHITGEAIVRGDTVAIRNLVDIF 474
            I+   N L  ++ I+ +PI +FEEL+KSASSMFVAIFE +F VR + V+RKP  V +Y+ NA++V+ AL+   L +DLS+++ EAI RG+   I +++ IF
Sbjct:   57 IVRRTNELFVKLNITTRPIQAFEELQKSASSMFVAIFETLFNVRLKNVIRKPRVVTDYITNAELVMTALSES-LPVDLSYLSSEAIYRGEPKHIHHMLSIF 156
[Close]
BLAST of mRNA_Ecto-sp13_S_contig77.18935.1 vs. uniprot
Match: A0A1V9YQH6_9STRA (DUF5745 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YQH6_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 8.860e-15
Identity = 46/124 (37.10%), Postives = 73/124 (58.87%), Query Frame = 1 
Query:  172 ILASINTLLNRVGISAKPINSFEELRKSASSMFVAIFEAMFQVRQRGVVRKPAHVHNYVHNAQMVVDALAGPILNMDLSHITGEAIVRGDTVAIRNLVDIFMGISEVVIKRQARPDGGPAAQEF 543
            +L   N LL   G   +   + +EL  S SSM VA+FE +F +R +GVVR+P    +Y +NAQ+V+DALA  +L  DLSH+ G+ +  GD  +IR LV +   +  ++  +++R D   +  +F
Sbjct:    5 VLQETNALLRLTGFGDRIFRALDELVASVSSMSVALFERLFDLRLKGVVREPHSHEDYCNNAQLVIDALAEAVLTEDLSHVNGQLVCDGDLKSIRELVRVLSHVYHML--QRSRHDDASSESDF 126
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig77.18935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ17_ECTSI0.000e+095.66DUF5745 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KDB6_9PHAE2.070e-18688.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJC8_9PHAE1.720e-78100.00DUF5745 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835Z720_9STRA2.510e-3759.20DUF5745 domain-containing protein (Fragment) n=1 T... [more]
A0A7S4DH09_HETAK2.240e-3558.82Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2D4CC91_PYTIN8.080e-1837.24DUF5745 domain-containing protein n=1 Tax=Pythium ... [more]
A0A2R5GFQ7_9STRA1.060e-1642.86Centrosomal protein of 95 kDa n=1 Tax=Hondaea ferm... [more]
A0A2D4BTL5_PYTIN1.400e-1542.59DUF5745 domain-containing protein n=1 Tax=Pythium ... [more]
A0A7S2WBU4_9STRA1.610e-1547.52Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A1V9YQH6_9STRA8.860e-1537.10DUF5745 domain-containing protein n=1 Tax=Thrausto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig77contigEcto-sp13_S_contig77:19250..26903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score981.1
Seed ortholog evalue2.1e-283
Seed eggNOG ortholog2880.D7FJ17
Preferred nameCEP95
Model size1770
KEGG koko:K16544
Hectar predicted targeting categoryother localisation
GOsGO:0000922,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0015630,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464
Exons13
EggNOG OGs28KYM@1,2QTFE@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_004780.1
Cds size1662
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464040.6594398-CDS-Ecto-sp13_S_contig77:19249..193231681464040.6594398-CDS-Ecto-sp13_S_contig77:19249..19323Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77 19250..19323 -
1681464040.6779635-CDS-Ecto-sp13_S_contig77:19552..197361681464040.6779635-CDS-Ecto-sp13_S_contig77:19552..19736Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77 19553..19736 -
1681464040.6896722-CDS-Ecto-sp13_S_contig77:20037..201821681464040.6896722-CDS-Ecto-sp13_S_contig77:20037..20182Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77 20038..20182 -
1681464040.7008603-CDS-Ecto-sp13_S_contig77:20393..204731681464040.7008603-CDS-Ecto-sp13_S_contig77:20393..20473Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77 20394..20473 -
1681464040.7148328-CDS-Ecto-sp13_S_contig77:20659..207941681464040.7148328-CDS-Ecto-sp13_S_contig77:20659..20794Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77 20660..20794 -
1681464040.7254438-CDS-Ecto-sp13_S_contig77:20967..210391681464040.7254438-CDS-Ecto-sp13_S_contig77:20967..21039Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77 20968..21039 -
1681464040.7355933-CDS-Ecto-sp13_S_contig77:21622..216971681464040.7355933-CDS-Ecto-sp13_S_contig77:21622..21697Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77 21623..21697 -
1681464040.745659-CDS-Ecto-sp13_S_contig77:23046..233731681464040.745659-CDS-Ecto-sp13_S_contig77:23046..23373Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77 23047..23373 -
1681464040.7550852-CDS-Ecto-sp13_S_contig77:24306..244761681464040.7550852-CDS-Ecto-sp13_S_contig77:24306..24476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77 24307..24476 -
1681464040.7649562-CDS-Ecto-sp13_S_contig77:24806..248591681464040.7649562-CDS-Ecto-sp13_S_contig77:24806..24859Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77 24807..24859 -
1681464040.7747388-CDS-Ecto-sp13_S_contig77:25138..252961681464040.7747388-CDS-Ecto-sp13_S_contig77:25138..25296Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77 25139..25296 -
1681464040.785029-CDS-Ecto-sp13_S_contig77:26347..264671681464040.785029-CDS-Ecto-sp13_S_contig77:26347..26467Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77 26348..26467 -
1681464040.7956085-CDS-Ecto-sp13_S_contig77:26726..267951681464040.7956085-CDS-Ecto-sp13_S_contig77:26726..26795Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77 26727..26795 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464040.8059704-UTR-Ecto-sp13_S_contig77:26795..269031681464040.8059704-UTR-Ecto-sp13_S_contig77:26795..26903Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig77 26796..26903 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig77.18935.1prot_Ecto-sp13_S_contig77.18935.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig77 19250..26795 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig77.18935.1

>prot_Ecto-sp13_S_contig77.18935.1 ID=prot_Ecto-sp13_S_contig77.18935.1|Name=mRNA_Ecto-sp13_S_contig77.18935.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=554bp
MSGASPSPPDSSLDEATEEGFILASINTLLNRVGISAKPINSFEELRKSA
SSMFVAIFEAMFQVRQRGVVRKPAHVHNYVHNAQMVVDALAGPILNMDLS
HITGEAIVRGDTVAIRNLVDIFMGISEVVIKRQARPDGGPAAQEFWAGSR
RRLKARQGQPQLQQQQNQAQHHGTNSHPPPTASRFSRHGQQHATRVSDTG
RGDREHGLRVRPPRHEGLQESDHDGLDESLGRSELSPFRGETELQSSPSG
EALTARDILEAHRMFEERGGGFERREDVDAQQGPLRGEQLGMDRRVNRQE
EDREMKYRRYYQRVLKDRLTALRKRELADARKQRFAHQNATHVAKVRQIK
KERLEEKLRLARLSQRLHLQDEGRGRLSDLYKKILTALHRQRKEDDREDA
ARLKALHLAWQAQSDDLEKFFKERVELIVEHEQGSGRERAQTMASEEREL
SDLFRRAEMDYEARLSSQLQQQAVEAAAEERYHAEVQHAYKELLHMEDWS
GASRDRFLGVRPNTAFEQRLKQAGQSNNNYTARSRMKKERKHRDLNRAYG
RAT*
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mRNA from alignment at Ecto-sp13_S_contig77:19250..26903-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig77.18935.1 ID=mRNA_Ecto-sp13_S_contig77.18935.1|Name=mRNA_Ecto-sp13_S_contig77.18935.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7654bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77:19250..26903- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGGTGTCGGCGTCCGACCACAGCACATGCCGGCTCTCCTCAACTTGAA
CCGCGCGCGCCGTTAGGACACGTTAGGAGGAAACTGAGAGCAGGACAGCA
ATCACACTATGAGCGGTGCTTCACCGTCCCCGCCAGACTCATCTCTAGAT
GAAGCCACCGAAGAAGGATTCATACTGGTGAGAAGCTAGCAACCGAAGGA
GAGCATGTTTTGCCAGCGTGGCCTCGGTGTTGGTGCGTTGAGTGTGATAC
GTACAAGAGTTGGCGCCATTTCTTGTGACGTCAAGATCCAAAGCCCCGCA
CACAGGATGCAGTTGTGCTTTCGGCACGAGAGATGGATCCCAAGGAAACT
CCTCGACCTCTCATGTGTGCAATCGCCGCGTCGGATGAAGTGCCAGCGAT
GAACTTTCTTTCGGGAACGTTCGTTGCTTATTGCAGGCGAGTATCAACAC
TCTGCTGAACCGCGTGGGTATTTCTGCCAAGCCCATCAACTCGTTCGAGG
AGCTTCGCAAGAGCGCCTCTAGCATGTTTGTTGCCATTTTCGAGGCCATG
TTCCAGGTGCGAACGGGTGATCTCTGTCGTTCGGTTTTGTGCTGGGTTTT
ACGCTGCTATCTCACGTGGTGACTGTACTGCTGTGTCCCACAACAAACCT
CGGGGCGTGAAACCCGTAAACAAACAACTCGTCCAATCAGGTTCAGCGGT
AGGCTGTCCATCTGCTCATCGATCGGCAAACCCTCCGCTCACAGCATCAT
AGTTACAAGTCAACGTCGAAGCGCCATATATGTTCATACGACCGCTTACC
CGTATGAATACCATACTGTCCAGGAGGATGCGTTCTTGGCAAAGTCAAGT
GAACTTGGATACACAATGCTGCTCATCTATTGCGACGACACCAAAGTCCT
CTTGCTTTTGGGGTGCGCCGTAGTGCAAGCGGCCGTTGGGATTTTTTTCG
TTGCCCCTTCGGTTCTATTTAGATAAGAGCAGACGTGATGGAGTACAGAC
AAGTTGTCCCTTCATTTTCTAGGGACACAAGATTAAGATCGGGGTTTATT
TATAGTCGACACAGGCAGCCTTTTCGTTCCCTGGTGCTTTGACGCGGAAC
TGTGAAGATCATCCACAGTATCACAGCAGCCAGTGCTCAATGTAAATGTT
TTTTTTCATGGGTTTGGGGTTGAGAATGAGAACAGAACCGACATCGTGTA
TCGCCCCCCTCCCGGCTTCAAATTGGGCATGTGAGTATATTCTTGGACAG
GTTTGACCGACATCACTTGGAGTTACAGCAGTCTTGCCGGTAGGTTTGCG
GCATCTAGGGCCGGTTACACATGGCAAACGGTTGGGGCGGGCACACGACT
CTTTCGGTTGTCGAAGCTACCTATTTGTTTCAGGACAATCCTATGAGGAA
CTCTGGTGTAGACTAGCGTGGGGGGTGGGTGACAATTCTCTCTACTTGTG
CGCGTGTGGATGACCAACCGCTTGAACCCACCGCCCCCAAGCGTACGGTT
ACAATAGCGTCCCTCTTTGCCCCCAGGACCAGCACGATGTGGCTGCTGTT
GATATAAAAGTATACGCGATTCGTGTGCAATTGTCATCCGCTCTTCGGTG
CTGGAAGGTCCGGCAGCGAGGAGTCGTGCGAAAGCCGGCGCACGTCCACA
ACTACGTCCACAACGCGCAGATGGTGGTAGATGCTCTCGCCGGCCCGATC
TTGAACATGGACCTCTCGCACATCACGGGAGAGGCGATTGTCAGGGGTGA
TACTGTGGCCATACGGTGAGTTAGCACCTCCTTTGCCCCAACCTTTCTCG
TGCATATTCGTACCTGTCTGTCTTGTATAACCGACATGGGAAGCCCGGTC
CAACGATTAGCATGTGGCAAGCCCAGCTGCGCTTATGGTAGAGTGTGGAA
AGCCTGAAACACCTCTTGTGCTTCCCGCAGGAGCTTTGTCACCCCAGATA
TTCGTGGGCGTCTGCGCCCGAGATCTAACTCGCCGTTTGGAACCCTTTCC
GTTCGACATGTGTGAAAATGAAATTATCATTCATTTGTTTCCAGCAACCT
GGTGGACATCTTCATGGGGATCAGCGAGGTGGTTATCAAGCGCCAGGGTG
AGAACTCCTTGCTGTACGTAATCTTGCCAACATGTGTGCTGCCTGTAGTA
GTCAGCGTGCATATTCTGTGTAGTTTCTCGACTTCGACGGCGAGAACAAA
CTAAAAACAAGGTGCAGCAGGGATATGCGGTCAATTTGCTGTTGGCTGCT
CAGACGTGCACGCTGCTGTCTGTGATGGTTGACAGCGTTGGCAGCTGCTC
TCGCTTATGGTGGATTCTTCCGTTACGAATATTGAACGCCTGCTTTCCTC
TGCGGCGGCCATTCGTGCGCCTCAGTCTGAAGTTAAATCCCCGATCTTGA
CCTTGTCGCTGTCTTTCCCTGCCCCAGCCCGACCGGATGGTGGGCCTGCT
GCTCAGGAATTTTGGGCTGGATCTCGCCGGAGGCTCAAGGCCCGCCAGGG
CCAGCCGCAACTTCAACAACAGCAGAACCAAGCGCAGCACCATGGCACAA
ACTCACACCCACCACCTACGGCTAGCCGTTTCAGTCGTCACGGCCAGGTA
ACCGTAATGAGCTTTTTGCTGTGTTCGCGTCTTTTGGTGGGAAATGCAAC
TGATCATATCCATCCCTGCCGATGAATGATACTTACTTTTCGTCGCTGTA
GAGACAAGATTTCCCACAAGTTTTCGTGCGGCATCATCGAATTGTTTGTA
GGTATGTTGTATTCAGCAAAACGAAGCGGTTAGTTGTCCATGCTAACACA
CCTCGAGTGAAACCACACGTCACCTATGGACTGCAACCCGGTACCTTCTC
CGTTGCTTTTATCCACCATTCGACACACATAGCCTGTAGGCACGGCACCA
CACCGGTCCTTGGGCAACCACACTATAATAACACGCCTGGCTCCGCATCA
AATAGAGTATGACACATGTTTTAGTAATCTATCTTGAACCAAACGCAACA
AAATGATAGCGATGTCATTTAGGCTGTATGAACACATTTGCTCGGAGCCA
AAAACTAGGTGAACTCGTCGTCGTTTGCGCTAGAGAGTAAGTTAGGTGGG
ACAGATCAGGAGCAAGTCGAAAACATATGTCAGTAGTTTGAAGTTGTTCG
CAGTCGTTGCGTGAGGCACAATGGCAACCGTCCCCGGCTAAACCGCGGCT
TTTCGTATGCAGAGGCTCCCACAGACTTAACGCTCCTCGGATCCAATATC
CAACGGTGGTTGTGCCAGTTTCGTGGTGGTATATGGTGGCGCAACCACTA
GCACAAACATTTTTTCCCAGCGATAGACCAACGCCCGTGGCTCCACGTTT
CTCTCACAACTGATCATCACACGGACCACCTTCTTGTTGGTACCTGAGGC
ATTGGGACTCGTCGCATGTGTTTCAGTGGTGTTAGCCTACTCGCCTCTGC
CACTTAGTTGATTGTCATGGTATTTTGCTTGCAGTTCGTGCGACTCACTC
ACTCTGCTCGTCCGTCACGTGCACGAGCAGCAGCACGCCACGCGCGTGTC
AGATACTGGTAGAGGAGACAGGGAGCACGGGTTGAGGGTGCGACCGCCCC
GGCACGAAGGCTTGCAAGAGTCTGATCACGACGGACTGGACGAGAGTTTA
GGGAGGTCCGAGCTGAGCCCCTTTCGGGGAGAAACAGAACTGCAGTCGAG
CCCCTCGGGGGAGGCCCTGACTGCGCGTGACATTCTCGAAGCCCACAGGA
TGTTTGAGGAGCGGGGAGGGGGGTTTGAGAGACGCGAAGATGTGGATGCG
CAACAGGGGCCGCTCAGGGGCGAGCAACTTGGAATGGATCGGCGTGTCAA
CAGACAGGTGACATGCCTGGATCTAGCTATTACTGTAGCGTGCTGTGTTC
GGGGGCTCTGCATTGTATGGCGAGGTTTACATGCTGAAGCTCAACACTAT
GTGCTCCATGTAGATCTCATCACTTGCTACCCTTGCGTCCTTTTCCCTGC
ATGTGTTTCAGAATAGAACGATGTTCTTGTCGAACTCGATGCTGGATGAG
CTGCGTGTCCTTTTGCCGCGGTGCTGCACGTGCAGCTATCACTGGCGTAG
CGTTTGTTTGTTGCCTTTGTCCGGCGCCTTATTTCTCGCTGTCTTCTTGT
GAACCTTTTCCTGCTGTCGTACCGCCGTGCATGATATAACGTACTTCGCC
GATGGCGTGCCATGGGTAATTTTAGATACGTACATCTACCACAAGCCTAT
GATATTTTTTCGGAAACACATGACACGGTATCGTTTTCTGTTTGGGGGGG
TGATGGCCTCCACCCCTGCTGTGAAGGCTGGGCCTTTTGTCACGCGTTGG
TGGTCTTTGTGGGATGTAGTGAAGTAGTCGATTTGATGACATGTGCGTGA
GATAGCTCTCCCGAAAAACAAATGTCGCTTTCGCCCTCTTCTGACGGTGT
GATACCACAGACGTATAATCCTCGACGTCAGAACATGCTGATGATACATA
AACGAGCTGTGGCATTTCGTGCCAACAATTTTGGTGCTGTTCACAGGTAG
CACACCGTGTTTCATATCGAGCACACACCGGTCTTTAGTCCCCTGATACA
AATGGTTTTATACTGTAAGGACCCAGTGGCGCAAGATATCCGCATGCGGA
ACAAATGAAGTACGGCTTAGCTTTAGGTGACACAAGCGCGTTTCACCTAC
GAATACACTCAGAGCTATCAGAGCTAAATACGCGAAACTCCGCGCTCAAA
CCGAGAAACGACGTAGGAATGGGCCAAATGAGCGACAAGATACAGACAAC
CGACCGCAGAGGCAAGGGAATGAAGAAGACAAAGTGATGGCGCTCGATGC
TCATTCGAACCACGGGAGTGGTTGAAATACTCAATCAATGCACAAGCACG
ATCCGTGGGTATTTAACAAGGGAATGGGGTTCCTGCGTGATGGTACGATA
CGGGGGTGTCACTCCGTCACGCATACGTACGTGTTCGATTGTCAGGGGCT
CCGTAATGACAATTCGGTAGAACTCCAGAGCGTGTGATATCGTATGTCAC
CCGTGCGATATCCCGGCCGGCAATACGGAATTTAAAGCAGATACCACACG
ACCCGATATTCTGCGAAGGTGTCCTTTGACACCCATTGATCCACTTTCTA
GGGGAGAGAAAACACGTGCAGCTGACCCCAACTTGTTGTCTGCCCTTGGG
CCTCAGGAGGAGGATCGGGAAATGAAATACCGCCGATACTATCAACGGGT
ACTCAAGGACCGTCTCACAGCGCTGCGAAAGGTACGGCCCATATAATGCA
CTTTGTCGGGGAAGTATTACTTTTGGCTCCTTTGCGATGGAGCCCACGAT
CTGCACCTGTCCGATGGTATCCTCCCTATCTTCCTGTTGCACCCCCCAAA
AACGGATATACGAAAATTATTTAGGAAGCTTTTGTTTCGCTCCCAGGTCG
AAAACCATGACCTTGCTGTTCCTCAGTCTAGCACACCAGGACACCCGGCG
TGCTATACGGTGTTCCCATGTTCCCATATCCCGACCTACTTGTGTGCTCT
GCTCTCGGTGTTACTGAGAGACGGAGTAGAGCCGTATTGTTGGGGGAAAA
CGGGTGCTTGATTGCGCCTTCCACCCGCGCAATGCGCCAAATTTGATTCA
ACTTCACCTGTACAGAGTGTCTGTGTCGCTGCATAGTTTGAGTGGATCTC
TGAACCCACGACGAGGACCTGCCGGTTGGAATACCGCCCGAATGTGTTGA
TCGGCTCGTACGGCCTTGGTCAGCGCTCAGCTAAGAGATATAGCAGGAAG
CTTGTCTCTGATACTCTCTCAGCCCTTTTCCCTGTGCTGCGTGCGTCTGA
TGCACCTCATGCAGAGAGAGCTCGCCGACGCTCGGAAGCAGCGTTTTGCA
CACCAGAACGCTACTCACGTGGCGAAGGTCCGCCAGGTGCGCGCTCCTCA
GATGGCCGATTGCCAACTCGCGGTGAATAGGAGAGATTTCCACCTTGAAG
CTGGGAATATGTACACTCGGTAGTATACTCTCGATGAGCAATTTCCCGTG
TCTTAACGTCACGTGCTATCGTCGTTTGGTGTTGGCTTGCCAACGATTTC
CCTGTGCAGATAAAGAAAGAGCGCTTGGAAGAGAAGCTACGGCTAGCAAG
ACTGTCTCAGCGCTTGCACTTGCAGGACGAAGGCCGCGGCCGGCTGAGTG
ACTTGTACAAGAAGATTCTTACAGCGTTACACCGTCAGAGGAAGGTGAGC
GTGCGATTGTGTCCCACTGTAGGTTGGATCGTCCTTCTCAAAAGCAGTCG
TTCCGAAGGATATGTTGTCGAGTTTGCGCTTGACGACTACTCTAGTATAG
ACCAAACAAACCCAGGGGCTGCTTCTGGGCTGGCTTAACCTGTTTCGTGT
GTGCGGACCTTGCTTTCAACGTTTTGTTAGGAGGATGATCGGGAGGATGC
GGCACGACTGAAGGCCCTTCATCTAGCGTGGCAGGCGCAATCAGACGACC
TCGAGAAGTTGTAAGTGTCTACCATTGTGCGTGCGTGGTATTGTGGGTTG
TGCTGCGAAGCATGTTGTGTTGTCATTCAAGTATATTCATGTTTGGCGTC
ACACCCGTCAACTGGTCCGACTACCTTGGATGTCTTTGTATCGAGTTTGC
TCTAGTATAATTTGTGCAGACCCGACATTACATTGAATCGCTCGGGGCGT
ACGTTCTTGCTTATTTGTCAGCTTCAAAGAGCGCGTGGAGCTGATTGTGG
AACATGAACAAGGCTCTGGTAGGGAGCGTGCCCAGACAATGGCCTCGGAA
GAAAGGGAGCTGTCGGATTTATTCCGCCGCGCCGAAATGGACTACGAGGC
CCGTCTCTCCAGCCAGGTAAAACTCCAACCCGAGTTGTCGGCAGGGCTTT
TGCGCTTGCTGGAGTCACATACCAAATAGTTGCGCGAATCTTCAGCGGCC
CAGGGCTTTGGTTGTGTGAAAATCTTCATCTCGTCCGTGCTCTCTACACC
ACCTTCGCAAAGATGCTCTTGCAGGACCAGCATGGTTGCCCGAGGCAACC
TGCTTGTCCACTTGTCGTGCACAGCTTCCATGGACACAACGGCGTTTAAA
GCGCAAGTTTTTCGGTTTCAAAGGGTTGTTATTCGCTGCCTGCTTTTCGT
CCTGCCACCCCTACCAGCTCCAACAACAGGCGGTGGAGGCAGCGGCTGAG
GAACGGTACCATGCCGAGGTCCAGCACGCCTACAAGGAGCTGCTGCACAT
GGAGGACTGGTCTGGCGCCTCACGAGACAGATTCCTAGGCGTTCGACCGA
ATACCGCCTTCGAGCAGCGACTCAAACAGGCAGGCCAAAGCAACAACAAC
TGTTTTCTGCAGGATTTGTAGTTTGCAGCAGCCTGCGGTTGATCACCACA
GGAGGGCGCAAGCTTTCGCAGCAGATTGCAAAGGTGCTCTACTTCCCCAA
CGTTCTTTGCTAGAGGAACATCGGTGAGGAAGAAACGCATGCTTCAATCG
ATGTAGGGATTTTTTCCTCATGTGACCCCGACAGCTGCTTTTGCTGCCTG
ACGTTTTCGTCCAGGTGCGCGTGAGGGCAGACACGGCGAGGTCGCGAATG
AAGAAGGAGAGGAAGCACAGAGATCTCAACAGAGCGTATGGAAGGGCCAC
CTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig77:19250..26903-

>mRNA_Ecto-sp13_S_contig77.18935.1 ID=mRNA_Ecto-sp13_S_contig77.18935.1|Name=mRNA_Ecto-sp13_S_contig77.18935.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1662bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77:19250..26903- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGGTGCTTCACCGTCCCCGCCAGACTCATCTCTAGATGAAGCCAC
CGAAGAAGGATTCATACTGGCGAGTATCAACACTCTGCTGAACCGCGTGG
GTATTTCTGCCAAGCCCATCAACTCGTTCGAGGAGCTTCGCAAGAGCGCC
TCTAGCATGTTTGTTGCCATTTTCGAGGCCATGTTCCAGGTCCGGCAGCG
AGGAGTCGTGCGAAAGCCGGCGCACGTCCACAACTACGTCCACAACGCGC
AGATGGTGGTAGATGCTCTCGCCGGCCCGATCTTGAACATGGACCTCTCG
CACATCACGGGAGAGGCGATTGTCAGGGGTGATACTGTGGCCATACGCAA
CCTGGTGGACATCTTCATGGGGATCAGCGAGGTGGTTATCAAGCGCCAGG
CCCGACCGGATGGTGGGCCTGCTGCTCAGGAATTTTGGGCTGGATCTCGC
CGGAGGCTCAAGGCCCGCCAGGGCCAGCCGCAACTTCAACAACAGCAGAA
CCAAGCGCAGCACCATGGCACAAACTCACACCCACCACCTACGGCTAGCC
GTTTCAGTCGTCACGGCCAGCAGCACGCCACGCGCGTGTCAGATACTGGT
AGAGGAGACAGGGAGCACGGGTTGAGGGTGCGACCGCCCCGGCACGAAGG
CTTGCAAGAGTCTGATCACGACGGACTGGACGAGAGTTTAGGGAGGTCCG
AGCTGAGCCCCTTTCGGGGAGAAACAGAACTGCAGTCGAGCCCCTCGGGG
GAGGCCCTGACTGCGCGTGACATTCTCGAAGCCCACAGGATGTTTGAGGA
GCGGGGAGGGGGGTTTGAGAGACGCGAAGATGTGGATGCGCAACAGGGGC
CGCTCAGGGGCGAGCAACTTGGAATGGATCGGCGTGTCAACAGACAGGAG
GAGGATCGGGAAATGAAATACCGCCGATACTATCAACGGGTACTCAAGGA
CCGTCTCACAGCGCTGCGAAAGAGAGAGCTCGCCGACGCTCGGAAGCAGC
GTTTTGCACACCAGAACGCTACTCACGTGGCGAAGGTCCGCCAGATAAAG
AAAGAGCGCTTGGAAGAGAAGCTACGGCTAGCAAGACTGTCTCAGCGCTT
GCACTTGCAGGACGAAGGCCGCGGCCGGCTGAGTGACTTGTACAAGAAGA
TTCTTACAGCGTTACACCGTCAGAGGAAGGAGGATGATCGGGAGGATGCG
GCACGACTGAAGGCCCTTCATCTAGCGTGGCAGGCGCAATCAGACGACCT
CGAGAAGTTCTTCAAAGAGCGCGTGGAGCTGATTGTGGAACATGAACAAG
GCTCTGGTAGGGAGCGTGCCCAGACAATGGCCTCGGAAGAAAGGGAGCTG
TCGGATTTATTCCGCCGCGCCGAAATGGACTACGAGGCCCGTCTCTCCAG
CCAGCTCCAACAACAGGCGGTGGAGGCAGCGGCTGAGGAACGGTACCATG
CCGAGGTCCAGCACGCCTACAAGGAGCTGCTGCACATGGAGGACTGGTCT
GGCGCCTCACGAGACAGATTCCTAGGCGTTCGACCGAATACCGCCTTCGA
GCAGCGACTCAAACAGGCAGGCCAAAGCAACAACAACTACACGGCGAGGT
CGCGAATGAAGAAGGAGAGGAAGCACAGAGATCTCAACAGAGCGTATGGA
AGGGCCACCTGA
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