mRNA_Ecto-sp13_S_contig76884.18918.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig76884.18918.1
Unique NamemRNA_Ecto-sp13_S_contig76884.18918.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig76884.18918.1 vs. uniprot
Match: A0A6H5JGF3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGF3_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 3.130e-42
Identity = 68/78 (87.18%), Postives = 71/78 (91.03%), Query Frame = 1 
Query:    1 VTETPRFGWGLKAERDIELGEKLATIPRCMCIGSTAAVQGEEDVDDNNSIPEEDKSWMGPPELQALVEKVPRAYPDLR 234
            + ETP FGWGLKAERDIELGEKLATIPRCMCIGSTAAVQGEE  DD+N +PEEDKSWMGPPELQALVEKVP  YPDLR
Sbjct:   88 LEETPHFGWGLKAERDIELGEKLATIPRCMCIGSTAAVQGEEGADDSNGVPEEDKSWMGPPELQALVEKVPPTYPDLR 165
[Close]
BLAST of mRNA_Ecto-sp13_S_contig76884.18918.1 vs. uniprot
Match: D7FW30_ECTSI (Set domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW30_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 1.370e-40
Identity = 70/78 (89.74%), Postives = 72/78 (92.31%), Query Frame = 1 
Query:    1 VTETPRFGWGLKAERDIELGEKLATIPRCMCIGSTAAVQGEEDVDDNNSIPEEDKSWMGPPELQALVEKVPRAYPDLR 234
            + ETPRFGWGLKAERDIELGEKLATIPRCMCIGSTAAVQGEE  DDNN + EEDKSWMGPPELQALVEKVPR YPDLR
Sbjct:   88 LEETPRFGWGLKAERDIELGEKLATIPRCMCIGSTAAVQGEEGADDNNGVLEEDKSWMGPPELQALVEKVPRTYPDLR 165
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig76884.18918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JGF3_9PHAE3.130e-4287.18Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FW30_ECTSI1.370e-4089.74Set domain protein n=1 Tax=Ectocarpus siliculosus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig76884contigEcto-sp13_S_contig76884:99..335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score150.2
Seed ortholog evalue4e-34
Seed eggNOG ortholog2880.D7FW30
Model size237
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.peptidyl-lysine monomethylation
EggNOG OGsKOG1337@1,KOG1337@2759
Ec32 ortholog descriptionRubisco LSMT, substrate-binding domain
Ec32 orthologEc-01_003160.1
Cds size237
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464039.0846426-CDS-Ecto-sp13_S_contig76884:98..3351681464039.0846426-CDS-Ecto-sp13_S_contig76884:98..335Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig76884 99..335 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig76884.18918.1prot_Ecto-sp13_S_contig76884.18918.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig76884 99..335 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig76884.18918.1

>prot_Ecto-sp13_S_contig76884.18918.1 ID=prot_Ecto-sp13_S_contig76884.18918.1|Name=mRNA_Ecto-sp13_S_contig76884.18918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
VTETPRFGWGLKAERDIELGEKLATIPRCMCIGSTAAVQGEEDVDDNNSI
PEEDKSWMGPPELQALVEKVPRAYPDLR*
back to top

mRNA from alignment at Ecto-sp13_S_contig76884:99..335-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig76884.18918.1 ID=mRNA_Ecto-sp13_S_contig76884.18918.1|Name=mRNA_Ecto-sp13_S_contig76884.18918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76884:99..335- (Ectocarpus species13 EcNAP12_S_4_19m)
GTAACAGAAACGCCTCGGTTTGGGTGGGGGTTGAAGGCGGAGCGAGATAT
CGAGCTCGGGGAGAAGCTGGCGACAATCCCCAGGTGCATGTGCATTGGAA
GCACCGCCGCCGTGCAAGGCGAAGAGGACGTAGACGATAACAACAGTATC
CCCGAGGAGGACAAATCTTGGATGGGACCGCCCGAATTACAGGCTCTCGT
CGAGAAGGTCCCTCGCGCGTACCCGGACCTTAGGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig76884:99..335-

>mRNA_Ecto-sp13_S_contig76884.18918.1 ID=mRNA_Ecto-sp13_S_contig76884.18918.1|Name=mRNA_Ecto-sp13_S_contig76884.18918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76884:99..335- (Ectocarpus species13 EcNAP12_S_4_19m)
GTAACAGAAACGCCTCGGTTTGGGTGGGGGTTGAAGGCGGAGCGAGATAT
CGAGCTCGGGGAGAAGCTGGCGACAATCCCCAGGTGCATGTGCATTGGAA
GCACCGCCGCCGTGCAAGGCGAAGAGGACGTAGACGATAACAACAGTATC
CCCGAGGAGGACAAATCTTGGATGGGACCGCCCGAATTACAGGCTCTCGT
CGAGAAGGTCCCTCGCGCGTACCCGGACCTTAGGTGA
back to top