mRNA_Ecto-sp13_S_contig76736.18905.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig76736.18905.1
Unique NamemRNA_Ecto-sp13_S_contig76736.18905.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig76736.18905.1 vs. uniprot
Match: A0A6H5LAW9_9PHAE (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAW9_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 1.790e-61
Identity = 160/202 (79.21%), Postives = 169/202 (83.66%), Query Frame = 1 
Query:    1 GLGRGAAEESPSARTPVRHQNGSGLADADGSIPIALSNVENDGILLAESRVARAAAGAAATMPSVPLRSLGAASSGSLGGGSVPAPPAYAQATPGGXXXXXXXXXXXXXXXXXXTGEARGQGDDLPNAPPSGVSAAGLASGGFGHGXXXXXXXXXXXXRGEEAARTGSDNSSSAISSGASPVAPDAEQHCVSSGQDQAGGKG 606
            GL RGAAEESP A TPV+HQ GSGLADADG+IP ALS+VEN+  LLAESRVA AAAGAAATMPSVPLRSLGAAS GSLGGGSVPAPPAYAQA PG  XXXXXXXXXXXXXXX  TGEARGQG+DLP+  PSG+SAA +ASGGF   XXXXXXX       EEAART SDN+SS  SSG S VAPDA QHCVSSGQDQAGGKG
Sbjct:  102 GLPRGAAEESPFAGTPVQHQTGSGLADADGNIPAALSSVENNRTLLAESRVAGAAAGAAATMPSVPLRSLGAASGGSLGGGSVPAPPAYAQANPGSSXXXXXXXXXXXXXXX--TGEARGQGNDLPDESPSGISAAAVASGGFXXXXXXXXXX-------EEAARTHSDNNSSGTSSGTSAVAPDAGQHCVSSGQDQAGGKG 294
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig76736.18905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LAW9_9PHAE1.790e-6179.21RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig76736contigEcto-sp13_S_contig76736:3..642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size641
Hectar predicted targeting categoryother localisation
Exons1
Cds size639
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464037.667641-CDS-Ecto-sp13_S_contig76736:2..6411681464037.667641-CDS-Ecto-sp13_S_contig76736:2..641Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig76736 3..641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig76736.18905.1prot_Ecto-sp13_S_contig76736.18905.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig76736 3..641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig76736.18905.1

>prot_Ecto-sp13_S_contig76736.18905.1 ID=prot_Ecto-sp13_S_contig76736.18905.1|Name=mRNA_Ecto-sp13_S_contig76736.18905.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=213bp
GLGRGAAEESPSARTPVRHQNGSGLADADGSIPIALSNVENDGILLAESR
VARAAAGAAATMPSVPLRSLGAASSGSLGGGSVPAPPAYAQATPGGSGSS
SSSSISSTGGGSSSTGEARGQGDDLPNAPPSGVSAAGLASGGFGHGGGGG
GGGGCGGGRGEEAARTGSDNSSSAISSGASPVAPDAEQHCVSSGQDQAGG
KGTGVGSGSISGN
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mRNA from alignment at Ecto-sp13_S_contig76736:3..642+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig76736.18905.1 ID=mRNA_Ecto-sp13_S_contig76736.18905.1|Name=mRNA_Ecto-sp13_S_contig76736.18905.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=640bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76736:3..642+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCTGGGACGCGGCGCTGCGGAGGAGTCCCCATCTGCGAGGACCCCTGT
ACGGCACCAGAACGGCAGCGGCCTTGCGGACGCCGACGGGAGTATTCCTA
TAGCGCTATCAAACGTGGAAAATGACGGGATTCTTTTGGCGGAGTCACGG
GTCGCACGGGCGGCAGCGGGGGCGGCGGCAACGATGCCGAGTGTACCGTT
GCGCTCTCTCGGCGCCGCGAGCAGCGGGAGCTTGGGCGGAGGCAGCGTAC
CAGCTCCTCCCGCGTATGCTCAGGCGACTCCTGGCGGCAGCGGTAGCAGC
AGCAGCAGCAGCATCAGTAGCACCGGTGGAGGAAGCAGTAGCACTGGTGA
GGCACGAGGCCAAGGTGATGACTTGCCGAACGCGCCACCAAGCGGTGTCT
CGGCCGCTGGCCTTGCGTCCGGCGGATTCGGACACGGCGGCGGCGGCGGC
GGCGGCGGCGGTTGCGGCGGCGGCCGTGGGGAGGAGGCCGCACGAACTGG
TAGCGATAATAGCAGCAGTGCCATCAGCAGCGGTGCTTCGCCGGTCGCTC
CCGATGCTGAACAGCATTGCGTTAGCAGCGGGCAGGATCAAGCCGGCGGC
AAAGGCACCGGTGTTGGTAGCGGCAGCATCAGTGGAAACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig76736:3..642+

>mRNA_Ecto-sp13_S_contig76736.18905.1 ID=mRNA_Ecto-sp13_S_contig76736.18905.1|Name=mRNA_Ecto-sp13_S_contig76736.18905.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=639bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76736:3..642+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCTGGGACGCGGCGCTGCGGAGGAGTCCCCATCTGCGAGGACCCCTGT
ACGGCACCAGAACGGCAGCGGCCTTGCGGACGCCGACGGGAGTATTCCTA
TAGCGCTATCAAACGTGGAAAATGACGGGATTCTTTTGGCGGAGTCACGG
GTCGCACGGGCGGCAGCGGGGGCGGCGGCAACGATGCCGAGTGTACCGTT
GCGCTCTCTCGGCGCCGCGAGCAGCGGGAGCTTGGGCGGAGGCAGCGTAC
CAGCTCCTCCCGCGTATGCTCAGGCGACTCCTGGCGGCAGCGGTAGCAGC
AGCAGCAGCAGCATCAGTAGCACCGGTGGAGGAAGCAGTAGCACTGGTGA
GGCACGAGGCCAAGGTGATGACTTGCCGAACGCGCCACCAAGCGGTGTCT
CGGCCGCTGGCCTTGCGTCCGGCGGATTCGGACACGGCGGCGGCGGCGGC
GGCGGCGGCGGTTGCGGCGGCGGCCGTGGGGAGGAGGCCGCACGAACTGG
TAGCGATAATAGCAGCAGTGCCATCAGCAGCGGTGCTTCGCCGGTCGCTC
CCGATGCTGAACAGCATTGCGTTAGCAGCGGGCAGGATCAAGCCGGCGGC
AAAGGCACCGGTGTTGGTAGCGGCAGCATCAGTGGAAAC
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