mRNA_Ecto-sp13_S_contig7673.18904.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7673.18904.1
Unique NamemRNA_Ecto-sp13_S_contig7673.18904.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7673.18904.1 vs. uniprot
Match: A0A6H5JC63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC63_9PHAE)

HSP 1 Score: 462 bits (1190), Expect = 3.410e-149
Identity = 233/277 (84.12%), Postives = 241/277 (87.00%), Query Frame = 1
Query:    1 RGDPDNLSFGKFYRLDVPLYDGMNDAAG--------------------AIDHQERLQLWKGDKRRDHTLAWTHAVSSHAFSGDGTMPTVGGMEHNKQRVSIDFLPVTPVVAPVDERATNGTTAEQDGVHTESLEQWVARKTKEFNLATRERPESDDIWLQYADFQEDAVRALHGGHTLQPSTAAIVRMTLEKRASVLEGALRQNPFSVRLRIPQLHLAEQMQEHVVVDSLWRAAIEKSSQSCTLWLRYLQFKASHFASFSVTSQRSIYTRCIRALES 771
            RGDPDN+SFGKFYRLDVPLYDGMNDAAG                    AIDHQE LQLWKGDKRRDHTLAWT A+SS   S DGT+PT GGMEHN+QRVS DFLPVTPVVAPV+ERATNG TAE DGVHT SLEQWVARKTKEFNLATRERP+SDDIWLQYADFQEDAVRALHGGHTLQP TAAIVRMTLEKR+SVLE ALRQNPFSVRL IPQLHLA QMQEHVVVDSLWRAAIEKSSQSCTLWLRYLQFKASHFASFSVT+QRSIY RCIRALES
Sbjct:  161 RGDPDNMSFGKFYRLDVPLYDGMNDAAGSRKSRRKVARYFGSHVRGASAIDHQEHLQLWKGDKRRDHTLAWTQAISSRTLSRDGTIPTFGGMEHNEQRVSTDFLPVTPVVAPVNERATNGMTAEHDGVHTLSLEQWVARKTKEFNLATRERPQSDDIWLQYADFQEDAVRALHGGHTLQPPTAAIVRMTLEKRSSVLERALRQNPFSVRLWIPQLHLAAQMQEHVVVDSLWRAAIEKSSQSCTLWLRYLQFKASHFASFSVTNQRSIYARCIRALES 437          
BLAST of mRNA_Ecto-sp13_S_contig7673.18904.1 vs. uniprot
Match: D7FJJ4_ECTSI (Similar to Uncharacterized protein C14orf102 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJJ4_ECTSI)

HSP 1 Score: 307 bits (786), Expect = 3.180e-102
Identity = 169/257 (65.76%), Postives = 171/257 (66.54%), Query Frame = 1
Query:    1 RGDPDNLSFGKFYRLDVPLYDGMNDAAGAIDHQERLQLWKGDKRRDHTLAWTHAVSSHAFSGDGTMPTVGGMEHNKQRVSIDFLPVTPVVAPVDERATNGTTAEQDGVHTESLEQWVARKTKEFNLATRERPESDDIWLQYADFQEDAVRALHGGHTLQPSTAAIVRMTLEKRASVLEGALRQNPFSVRLRIPQLHLAEQMQEHVVVDSLWRAAIEKSSQSCTLWLRYLQFKASHFASFSVTSQRSIYTRCIRALES 771
            RGDPDNLSFGKFYRLDVPLYDGMNDAAG                                                                                 TESLEQWVARKTKEFNLATRERPESDDIWLQYAD+QEDAVRALHGGHTLQP TAAIVRM LEKRASVLEGALRQNPFSVRLRIPQLHLA QMQEHVVVDSLWRAAIEKSSQSCTLWLRYLQFKASHFASFSVTSQRS Y RC+RALES
Sbjct:   15 RGDPDNLSFGKFYRLDVPLYDGMNDAAG--------------------------------------------------------------------------------QTESLEQWVARKTKEFNLATRERPESDDIWLQYADYQEDAVRALHGGHTLQPPTAAIVRMILEKRASVLEGALRQNPFSVRLRIPQLHLAAQMQEHVVVDSLWRAAIEKSSQSCTLWLRYLQFKASHFASFSVTSQRSFYARCVRALES 191          
BLAST of mRNA_Ecto-sp13_S_contig7673.18904.1 vs. uniprot
Match: A0A2R6W2R1_MARPO (Uncharacterized protein n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6W2R1_MARPO)

HSP 1 Score: 108 bits (269), Expect = 5.530e-23
Identity = 77/276 (27.90%), Postives = 132/276 (47.83%), Query Frame = 1
Query:    1 RGDPDNLSFGKFYRLDVP------LYDGMNDAAGAIDHQ--ERLQLWKGDKRRDHTLAWTHAVSSHAFSGDGTMPTVGGM------------EHNKQRVSIDFLPVTPVVAPVDERATNGTTAEQDGVHT-ESLEQWVARKTKEFNLATRERPESDDIWLQYADFQEDAVRALHGGHTLQPSTAAIVRMTLEKRASVLEGALRQNPFSVRLRIPQLHLAEQMQEHVVVDSLWRAAIEKSSQSCTLWLRYLQFKASHFASFSVTSQRSIYTRCIRAL 765
            RGD DN++FG  YRLD+       L+ GM   +G    Q  +R+ +       D  +       S  FS       +  +            EHN   +  DF+P+        E+A   T++  + V   E+ +++V RKTKE+N   RER   + +W+ +A+FQ++ ++A            A+V+  +EK+ ++LE AL   P S  L +  L   ++      + S W  A+ + S S  +W  +L+F+ S F++FSV+S R++Y R  ++L
Sbjct:  210 RGDRDNMAFGSLYRLDIARYRRQDLFKGMYGGSGRPSSQRLKRIDVGGDGMVEDEAVKSAGRYWSPKFSSLERKRKLRHVRLCKERFGFKQKEHNSAALG-DFVPLE------FEKAVQNTSSVAEDVDAGETWQEYVTRKTKEYNEQIRERSRDESLWISFANFQDELIQATE--------KKAVVQQAVEKKVAILEKALHILPDSEDLLLLYLESCQRRDTAAALVSKWEDAVSRHSSSFRMWREFLRFRCSQFSAFSVSSLRALYIRAFQSL 470          
BLAST of mRNA_Ecto-sp13_S_contig7673.18904.1 vs. uniprot
Match: UPI00090194DB (protein NRDE2 homolog isoform X1 n=5 Tax=Ipomoea TaxID=4119 RepID=UPI00090194DB)

HSP 1 Score: 103 bits (258), Expect = 1.570e-21
Identity = 80/273 (29.30%), Postives = 124/273 (45.42%), Query Frame = 1
Query:    1 RGDPDNLSFGKFYRLDVPLYDGMN------------------DAAGAIDHQERLQLWKGDKRRDHTLAWTHAVSSHAFSGDGTMPTVGGMEHNKQRVSIDFLPVTPVVAPVDERATNGTTAEQDGVHTESLEQWVARKTKEFNLATRERPESDDIWLQYADFQEDAVRALHGGHTLQPSTAAIVRMTLEKRASVLEGALRQNPFSVRLRIPQLHLAEQMQEHVVVDSLWRAAIEKSSQSCTLWLRYLQFKASHFASFSVTSQRSIYTRCIRAL 765
            RGD DNL+FG  Y++DV  Y   N                  D  G +D  +        K R     W+   ++     +     +      + + S+DF+P+      +DE  + G +     V  ES E  +  KTKEFN  TRERP+ + IWL +ADFQ+          ++QP   A +++ LEK+ S+LE A   NP S  L +  ++  +      V+ S W   + ++S S TLW  +L+F    F+ F V+  R IY   ++AL
Sbjct:  175 RGDRDNLAFGCLYKMDVARYKLHNTRKTFELNYCWRNHNSIFDPDGDVDAFD-------SKLRAEGRYWSAKYAAVERHKNLKRTRIFSHARPQLKDSVDFIPL------IDE-GSGGESVSGATVVEESWEDEIFCKTKEFNKMTRERPQDEKIWLDFADFQDKVA-------SMQPHKGARLQI-LEKKISILEKATELNPDSEDLLLSLMNAYQSRDSIDVLISRWERILLQNSDSYTLWREFLRFVQGEFSRFKVSEMRKIYANAVQAL 425          
BLAST of mRNA_Ecto-sp13_S_contig7673.18904.1 vs. uniprot
Match: A0A2G9I709_9LAMI (Uncharacterized protein n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9I709_9LAMI)

HSP 1 Score: 102 bits (254), Expect = 5.310e-21
Identity = 82/267 (30.71%), Postives = 121/267 (45.32%), Query Frame = 1
Query:    1 RGDPDNLSFGKFYRLDVPLYDGMNDAAGA----IDHQERLQLWKGDKRRDHTLAWTHAVSSHAFSGDGTMPT-VGGMEHNKQ----RVSIDFLPVTPVVA---PVDERATNGTTAEQDGVHTESLEQWVARKTKEFNLATRERPESDDIWLQYADFQEDAVRALHGGHTLQPSTAAIVRMTLEKRASVLEGALRQNPFSVRLRIPQLHLAEQMQEHVVVDSLWRAAIEKSSQSCTLWLRYLQFKASHFASFSVTSQRSIYTRCIRAL 765
            RGD DNL+FG  YR+DV  Y   N    +        +R+    GD   D       A+ +   SG          +E +K     R+     P+   VA   P+ +  ++G       V  ES E  V RKTKEFN  TRERP+ + IWL++A+FQ+          ++QP   A ++ TLEK+ S+LE A   NP S  L +  +   +      V+   W   +  +S S  LW  +L+     F+ F V+  R +Y   I+AL
Sbjct:  162 RGDRDNLAFGCIYRMDVARYKLYNSKKVSEYNYFRPSKRVGRLDGDSDID-------ALDTKLRSGGRYWSAKYAAIERHKNLKRVRIVAPSKPLGSSVADYIPLSDEGSDGGATSSLTVVEESWEDEVLRKTKEFNKMTRERPQDESIWLEFAEFQDKVA-------SMQPHKGARLQ-TLEKKISILEKATELNPDSEDLLLSLMKSYQSRDSTDVLIKRWEKILTANSWSYKLWREFLRVAQGEFSRFKVSEMRKMYANAIQAL 413          
BLAST of mRNA_Ecto-sp13_S_contig7673.18904.1 vs. uniprot
Match: UPI000900E7BC (protein NRDE2 homolog isoform X1 n=3 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI000900E7BC)

HSP 1 Score: 102 bits (253), Expect = 7.190e-21
Identity = 82/264 (31.06%), Postives = 123/264 (46.59%), Query Frame = 1
Query:    1 RGDPDNLSFGKFYRLDVPLYDGMNDAAGA--IDHQERLQL--WKGDKRRDHTLAWTHAVSSHAFSGDGTMPTVGGMEHNKQRVSI----DFLPVT-PVVAPVDERATNGTTAEQDGVHTESLEQWVARKTKEFNLATRERPESDDIWLQYADFQEDAVRALHGGHTLQPSTAAIVRMTLEKRASVLEGALRQNPFSVRLRIPQLHLAEQMQEHVVVDSLWRAAIEKSSQSCTLWLRYLQFKASHFASFSVTSQRSIYTRCIRAL 765
            RGDPDNL+FG  YR+DV  Y  ++D AG+  ID     Q+  W    R +  +    A             +V     N +R  I      LPV+     P+     +G+   +  V  ES E  + RKT+EFN+ TRE P +  +WL +++FQ+          + QP   A ++ TLEK+ S+LE A   NP    L +  L   +      V+   W   + + S SC LW  +L+     F++F V+  R +YT  I+AL
Sbjct:  149 RGDPDNLAFGCLYRMDVGRYK-LHDVAGSSEIDFGGHTQVSNWGLLTRGEFDVDGLDAKLKSNGRYWSVKHSVLEKNRNFKRFRIVATEKHLPVSWDDFIPLSAEDGDGSLFSRSSVIVESWEDEILRKTREFNIMTREHPHNVRVWLDFSEFQDKIA-------SNQPQKGARLQ-TLEKKISILEKAAELNPEDEDLLLCLLKAYQNRDTADVLIGRWEKVLMQHSGSCKLWREFLRVVQGDFSTFKVSELRRMYTHAIQAL 403          
BLAST of mRNA_Ecto-sp13_S_contig7673.18904.1 vs. uniprot
Match: A0A2J6JPU3_LACSA (Uncharacterized protein n=4 Tax=Lactuca TaxID=4235 RepID=A0A2J6JPU3_LACSA)

HSP 1 Score: 101 bits (251), Expect = 1.320e-20
Identity = 75/274 (27.37%), Postives = 122/274 (44.53%), Query Frame = 1
Query:    1 RGDPDNLSFGKFYRLDVPLYDGMNDAAGA-----IDHQERLQLWKGDKRRDHTLAWTHAVSSHAFSGDGTMPTVGGMEHNKQ--------------RVSIDFLPVTPVVAPVDERATNGTTAEQDGVHTESLEQWVARKTKEFNLATRERPESDDIWLQYADFQEDAVRALHGGHTLQPSTAAIVRMTLEKRASVLEGALRQNPFSVRLRIPQLHLAEQMQEHVVVDSLWRAAIEKSSQSCTLWLRYLQFKASHFASFSVTSQRSIYTRCIRAL 765
            RGD DNL+FG  YR+DV  Y   +    +     + H    + W  D   D     T   S   +           +EH+K                +  DF+P++  +      ++NG   +   +  ES E  V RKTKEFN+ TRE P ++  WL++A+FQ+          + QP   A ++ TLEK+ S+LE A+  NP +  L +  ++  ++   + V+   W   +   S S  LW  +L+     F+ F V+  R ++   I+AL
Sbjct:  161 RGDRDNLAFGSLYRMDVARYKLFHGTKSSGFNSNVFHSSNTRSWGFDGDNDVNSLDTKLRSEGRYWS----AKYAALEHHKNFKRLRIIAPKDSTPELGTDFVPLSDELT-----SSNG---QDSSLVEESWEDEVLRKTKEFNIMTREHPYNEKFWLEFANFQDKV-------ESRQPQRGARLQ-TLEKKISILERAVEVNPDNEELLLALMNAYQRRDNNDVLIGRWEKLLMHHSGSYKLWREFLRIVQGDFSKFKVSEVRKMFANAIQAL 414          
BLAST of mRNA_Ecto-sp13_S_contig7673.18904.1 vs. uniprot
Match: A0A7S0HB21_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HB21_9CRYP)

HSP 1 Score: 97.8 bits (242), Expect = 1.480e-19
Identity = 75/264 (28.41%), Postives = 118/264 (44.70%), Query Frame = 1
Query:    4 GDPDNLSFGKFYRLDVPLYDGMNDAAGAIDHQERLQL----------WKGDKRRDHTLAWTHAVSSHAFSGDGTMPTVGGMEHNKQRVSIDFLPVTPVVAPVDERATNGTTAEQDGVHTESLEQWVARKTKEFNLATRERPESDDIWLQYADFQEDAVRALHGGHTLQPSTAAIVRMTLEKRASVLEGALRQNPFSVRLRIPQLHLAEQMQEHVVVDSLWRAAIEKSSQSCTLWLRYLQFKASHFASFSVTSQRSIYTRCIRAL 765
            GD  NL +G  ++LDVP+Y      AG    + R  +           KGD R      W +  + H      T   +  +  +K             ++ VD ++   T  E       SLE  +AR+TKEFN++TRERP     WL + + Q++  +  +     + +  AI     EK+ ++L  AL++NP +  L +  L   +   +   V SLW A + K S    LW  YL  + S+F SF ++S R+ Y   IRA+
Sbjct:  195 GDKANLEYGHPFKLDVPMYRIQRFWAGNGFMKRRTAVVSMLGLPSMGLKGDARG----TWRYVRAQHILRLQSTQIKLLKLSLHKDENCQPLRRQNEFISIVDTKSDEVTAGE-------SLEDALARRTKEFNVSTRERPNDIRNWLAFVNLQDEFFKLYN-----RKNQMAIT----EKKVAILIRALKENPKNEELLVKYLEAIQGQLDPEKVQSLWEAVVAKHSNKPYLWRAYLMHRRSNFKSFEMSSVRAAYVTAIRAM 438          
BLAST of mRNA_Ecto-sp13_S_contig7673.18904.1 vs. uniprot
Match: A0A7I4EI35_PHYPA (Uncharacterized protein n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4EI35_PHYPA)

HSP 1 Score: 96.7 bits (239), Expect = 5.180e-19
Identity = 74/276 (26.81%), Postives = 123/276 (44.57%), Query Frame = 1
Query:    1 RGDPDNLSFGKFYRLDVPLY---------DGMN----------DAAGAIDHQERLQLWKGDKRRDHTLAWTHAVSSHAFSGDGTMPTVGGMEHNKQRVSIDFLPVTPVVAPVDERATNGTTAEQDGVHTESLEQWVARKTKEFNLATRERPESDDIWLQYADFQEDAVRALHGGHTLQPSTAAIVRMTLEKRASVLEGALRQNPFSVRLRIPQLHLAEQMQEHVVVDSL--WRAAIEKSSQSCTLWLRYLQFKASHFASFSVTSQRSIYTRCIRAL 765
            RGD DNL+FG  YR+D+  Y         +G            +  G +   +  + W G+     T      +  H+               N ++    F+P+      + ++       +++G   ES   ++ R+T+EFN  TRERP+ ++ WL++A FQ++ V      H  Q     + +  +EK+ SVLE AL  +P S++L +  L+L        V + L  W  A    S S   W  +LQF  S F+ FSV + RS+Y + + +L
Sbjct:  272 RGDRDNLAFGSLYRMDIARYVRQQVDRGEEGTKKRYATYLDVPEPDGDVQENKAYRYWSGEAMALETRRDLRRIRIHSLRPSAAT-------FNSRQDLDTFIPLEE--KDIKKKDVGDEDEQEEG---ESWNDYIIRRTREFNSLTRERPDDENSWLEFAKFQDELV------HMAQRK--GVKQQAVEKKISVLEKALEHHPDSLQLTL--LYLESCRLRDTVPEMLAKWEKAAILLSGSYRFWKNFLQFVCSQFSLFSVATVRSVYVQALGSL 525          
BLAST of mRNA_Ecto-sp13_S_contig7673.18904.1 vs. uniprot
Match: A0A1Q3BI86_CEPFO (NRDE-2 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3BI86_CEPFO)

HSP 1 Score: 96.3 bits (238), Expect = 6.860e-19
Identity = 76/270 (28.15%), Postives = 126/270 (46.67%), Query Frame = 1
Query:    1 RGDPDNLSFGKFYRLDVPLYDGMNDAA-GAIDHQE--RLQLWKGDKRRDHTLAWTHAVSSHAF--SGDGTMPTVGGMEH-------NKQRVSI---DFLPVTPVVAPVDERATNGTTAEQDGVHTESLEQWVARKTKEFNLATRERPESDDIWLQYADFQEDAVRALHGGHTLQPSTAAIVRMTLEKRASVLEGALRQNPFSVRLRIPQLHLAEQMQEHVVVDSLWRAAIEKSSQSCTLWLRYLQFKASHFASFSVTSQRSIYTRCIRAL 765
            RGDPDNL+FG  YR+DVP Y   +     + D  +     +   D+  D     T   SS  +  +    +     ++        N  ++S+   DFLP+  +        T+ T+  +     ES +  + R+T+EFN+ TRE P  ++ WL +A+FQ+          ++QP+  A ++ TLEK+ S+LE A   NP + +L I  L   +      ++ S W   + + S S  LW  +L+     F+ F V+  R +Y   I+AL
Sbjct:  141 RGDPDNLAFGCLYRMDVPRYKRYDPTKLSSFDSHQCGSSSILDRDRDSDADALDTKLKSSGRYWSAKHAALELHNSLKRVRILAPGNMSQLSVLDDDFLPLLDI-------QTSSTSLVE-----ESWDDQLLRRTREFNILTREHPHDENAWLAFAEFQDRVA-------SMQPTKGARLQ-TLEKKISILEKAAELNPGNEQLLICLLKAYQNRDSSDLLISKWEKILMQHSGSYKLWREFLRVVQVDFSRFKVSDMRKMYAHAIQAL 390          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7673.18904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JC63_9PHAE3.410e-14984.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJJ4_ECTSI3.180e-10265.76Similar to Uncharacterized protein C14orf102 homol... [more]
A0A2R6W2R1_MARPO5.530e-2327.90Uncharacterized protein n=3 Tax=Marchantia polymor... [more]
UPI00090194DB1.570e-2129.30protein NRDE2 homolog isoform X1 n=5 Tax=Ipomoea T... [more]
A0A2G9I709_9LAMI5.310e-2130.71Uncharacterized protein n=1 Tax=Handroanthus impet... [more]
UPI000900E7BC7.190e-2131.06protein NRDE2 homolog isoform X1 n=3 Tax=Beta vulg... [more]
A0A2J6JPU3_LACSA1.320e-2027.37Uncharacterized protein n=4 Tax=Lactuca TaxID=4235... [more]
A0A7S0HB21_9CRYP1.480e-1928.41Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A7I4EI35_PHYPA5.180e-1926.81Uncharacterized protein n=4 Tax=Physcomitrium pate... [more]
A0A1Q3BI86_CEPFO6.860e-1928.15NRDE-2 domain-containing protein n=1 Tax=Cephalotu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7673contigEcto-sp13_S_contig7673:279..1736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score309.7
Seed ortholog evalue1.3e-81
Seed eggNOG ortholog2880.D7FJJ4
Model size771
Hectar predicted targeting categoryother localisation
GOsGO:0001672,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0006325,GO:0006342,GO:0006355,GO:0006996,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010847,GO:0016043,GO:0016246,GO:0016441,GO:0016458,GO:0019219,GO:0019222,GO:0031047,GO:0031048,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031445,GO:0032991,GO:0033043,GO:0033044,GO:0035194,GO:0040029,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044087,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065007,GO:0071013,GO:0071840,GO:0080090,GO:1902275,GO:1902494,GO:1902679,GO:1902802,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Exons4
EggNOG free text desc.NRDE-2, necessary for RNA interference, domain containing
EggNOG OGsKOG1972@1,KOG1972@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-04_006350.1
Cds size771
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464037.5974576-CDS-Ecto-sp13_S_contig7673:278..3991681464037.5974576-CDS-Ecto-sp13_S_contig7673:278..399Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7673 279..399 -
1681464037.6104023-CDS-Ecto-sp13_S_contig7673:569..7591681464037.6104023-CDS-Ecto-sp13_S_contig7673:569..759Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7673 570..759 -
1681464037.624779-CDS-Ecto-sp13_S_contig7673:891..12681681464037.624779-CDS-Ecto-sp13_S_contig7673:891..1268Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7673 892..1268 -
1681464037.634996-CDS-Ecto-sp13_S_contig7673:1653..17361681464037.634996-CDS-Ecto-sp13_S_contig7673:1653..1736Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7673 1654..1736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7673.18904.1prot_Ecto-sp13_S_contig7673.18904.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7673 279..1736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7673.18904.1

>prot_Ecto-sp13_S_contig7673.18904.1 ID=prot_Ecto-sp13_S_contig7673.18904.1|Name=mRNA_Ecto-sp13_S_contig7673.18904.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=257bp
RGDPDNLSFGKFYRLDVPLYDGMNDAAGAIDHQERLQLWKGDKRRDHTLA
WTHAVSSHAFSGDGTMPTVGGMEHNKQRVSIDFLPVTPVVAPVDERATNG
TTAEQDGVHTESLEQWVARKTKEFNLATRERPESDDIWLQYADFQEDAVR
ALHGGHTLQPSTAAIVRMTLEKRASVLEGALRQNPFSVRLRIPQLHLAEQ
MQEHVVVDSLWRAAIEKSSQSCTLWLRYLQFKASHFASFSVTSQRSIYTR
CIRALES
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mRNA from alignment at Ecto-sp13_S_contig7673:279..1736-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7673.18904.1 ID=mRNA_Ecto-sp13_S_contig7673.18904.1|Name=mRNA_Ecto-sp13_S_contig7673.18904.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1458bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7673:279..1736- (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGGAGATCCGGATAATTTGTCGTTTGGCAAATTCTACCGGCTCGACGT GCCTCTGTATGACGGCATGAACGACGCTGCGGGGTGAGAACTTGCACTTG TAGTTTTGCCTGGAAATAAGTGGACATGTTGTCGCTACCATTGTAACAGT TGACAATCCTGGCGTGTGGAAGACGAAATAGTTGTTGTCGTGGTGCACCC TCCACCCTCGCGATCAGCAACCCGGCGATAGTTGAGTCACGATATTTGTG CTGCAGGCAGGTGAGTATAGTGGCACATCCTCGCCCTGCGGCTTGAAGAC TTTAGTCGACCGTTCCCGCGAAGACTTACCCTGTTCACCTGCAGCTCACA CAATGTTTCAAGCTTGGGTACAATATTCACGCCGCGCCGTTCTGCGTAAA TCCCACAGGAGCAGAAAATCGCGAAGGAAAGTTGCAAGGTACTTCGGTAG CCATCTCCGGGGTGCCAGCGCCATTGATCACCAAGAACGCCTGCAACTCT GGAAAGGCGACAAACGCAGGGATCACACCCTGGCTTGGACTCATGCTGTA TCTTCGCACGCTTTTTCTGGAGACGGGACGATGCCCACAGTTGGCGGGAT GGAGCACAATAAACAGAGGGTGAGCATCGACTTTCTGCCTGTAACTCCTG TCGTGGCGCCCGTGGATGAACGCGCTACGAACGGCACGACTGCCGAGCAA GACGGCGTGCACACGGAGAGTCTTGAACAGTGGGTGGCACGAAAGACCAA GGAGTTCAACCTGGCGACACGAGAGCGACCGGAATCAGACGACATCTGGC TGCAGTACGCGGATTTTCAGGAAGACGCCGTTCGGGCTCTGCACGGTGAG AAAGAGGCTGCGGCCACGGCCGTTCTCTTCGTGAAAGTAGGCGAGAGTCC AATCCATCTTCGTTTGACGCTCTGGAGTTAGAGGGGTTCAGTGTTAATAC ACGCGTTGTTTCGTCGGCTGTGTGCAGGTGGTCACACCTTGCAGCCCTCT ACAGCTGCTATTGTGCGGATGACCCTCGAAAAGCGAGCCTCCGTCCTGGA GGGAGCGCTACGACAGAATCCGTTCAGCGTCAGGCTACGGATACCACAGC TACATTTGGCGGAACAGATGCAGGAGCATGTTGTTGTGGACTCACTCTGG AGGGCAGCCATCGAAAAGTGAGCCATTGTCGAGGCGAGAGTGCCTCACGC GAAGCCTTGGCGCTTTTGCATGGACATCTAGGCAACCGGACGAATGAGAG TTTCCACTTTTTCCGGAGTGATCAAACTTTTGCTAATCGTTCCTTGGCGT CGTTTGTTGTTGTTCGCGCACGTCTTCTGACCCTCAGGAGCAGCCAATCT TGCACATTATGGCTTCGTTACCTGCAGTTCAAGGCATCCCACTTCGCTTC CTTTTCGGTTACCAGCCAGCGCTCTATCTACACCCGCTGCATTCGAGCTC TAGAATCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7673:279..1736-

>mRNA_Ecto-sp13_S_contig7673.18904.1 ID=mRNA_Ecto-sp13_S_contig7673.18904.1|Name=mRNA_Ecto-sp13_S_contig7673.18904.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=771bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7673:279..1736- (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGGAGATCCGGATAATTTGTCGTTTGGCAAATTCTACCGGCTCGACGT
GCCTCTGTATGACGGCATGAACGACGCTGCGGGCGCCATTGATCACCAAG
AACGCCTGCAACTCTGGAAAGGCGACAAACGCAGGGATCACACCCTGGCT
TGGACTCATGCTGTATCTTCGCACGCTTTTTCTGGAGACGGGACGATGCC
CACAGTTGGCGGGATGGAGCACAATAAACAGAGGGTGAGCATCGACTTTC
TGCCTGTAACTCCTGTCGTGGCGCCCGTGGATGAACGCGCTACGAACGGC
ACGACTGCCGAGCAAGACGGCGTGCACACGGAGAGTCTTGAACAGTGGGT
GGCACGAAAGACCAAGGAGTTCAACCTGGCGACACGAGAGCGACCGGAAT
CAGACGACATCTGGCTGCAGTACGCGGATTTTCAGGAAGACGCCGTTCGG
GCTCTGCACGGTGGTCACACCTTGCAGCCCTCTACAGCTGCTATTGTGCG
GATGACCCTCGAAAAGCGAGCCTCCGTCCTGGAGGGAGCGCTACGACAGA
ATCCGTTCAGCGTCAGGCTACGGATACCACAGCTACATTTGGCGGAACAG
ATGCAGGAGCATGTTGTTGTGGACTCACTCTGGAGGGCAGCCATCGAAAA
GAGCAGCCAATCTTGCACATTATGGCTTCGTTACCTGCAGTTCAAGGCAT
CCCACTTCGCTTCCTTTTCGGTTACCAGCCAGCGCTCTATCTACACCCGC
TGCATTCGAGCTCTAGAATCG
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