mRNA_Ecto-sp13_S_contig7668.18897.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7668.18897.1
Unique NamemRNA_Ecto-sp13_S_contig7668.18897.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7668.18897.1 vs. uniprot
Match: A0A6H5JE27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE27_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 1.590e-49
Identity = 131/370 (35.41%), Postives = 168/370 (45.41%), Query Frame = 1 
Query:   73 SGDSSAAGEGDARARELDLDNVHTRINEYVGAEVVDGQNLRLAPEALRSPYFQWVNLTEQLVSVWSLTTRPSRRSLQLLLDLLRYKEGSIPRCSEVS*APPQQSPGEVALPSTRAPEGGG*GWSARADC*MLVQPGSSAELESPRVVEEIMMNLGGKQMSHAEHVRSRVPERHLTLIATREVDGVRQSFMNEEIMAASAHMGLDCITTVEGVRLVVGDTEMVDVPAFGSSPLPCRIASLFWQNKHSSSXXXXXXXXXXXXXXXXXXXX--------------------------------------------------------------SGHLVVRVSPFLGREHMPQEIKNKRRADDDDLSSVWEVTN 996
            SG    A +G A+     L+++H  I EY+ AEVVDG++L  A  AL S +F W NLTE LVSVW++  RPSR+SLQ+LLDLLR ++    R        P+ S   V+    R P                             ++  +   + GK    AE     VP+ H T IATRE DG R  FM+ +IM ASAHMGL+C+ T +GVRL+VGDT MV +PAFG+SP PCRIA++FWQN                                                                                       +GHLVVRV+PF+ R  MP  IK+KRR D D + SVWEVTN
Sbjct:  111 SGAGDPASDGSAKVPPW-LEHLHKLIEEYMNAEVVDGEDLNFAGLALGSRFFPWANLTEMLVSVWAIVCRPSRKSLQMLLDLLRVEDSEGGRFDPRD--VPESSEHLVSRMRRRLP-----------------------------LLPVVRREVKGKDDKAAE-----VPDFHFTPIATRESDGARGGFMSGDIMMASAHMGLECVATTDGVRLMVGDTAMVRLPAFGNSPHPCRIAAIFWQNTRKQRRRALELSGGNGGGVCRWFQALDTIDEEDEDAGSSPSSTXXGASWQXXXXXXXXXXXXXXXXXXXXXXXXETQQGRPGGGVQSTGHLVVRVNPFVFRSDMPDGIKSKRRRDQD-VESVWEVTN 442
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BLAST of mRNA_Ecto-sp13_S_contig7668.18897.1 vs. uniprot
Match: A0A6H5LGI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGI1_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 4.090e-32
Identity = 85/231 (36.80%), Postives = 130/231 (56.28%), Query Frame = 1 
Query:  124 DLDNVHTRINEYVGAEVVDGQNLRLAPEALRSPYFQWVNLTEQLVSVWSLTTRPSRRSLQLLLDLL--------RYKEGSIPRCSE-VS*APPQQSPGEVALPSTRAPEGGG*GWSARADC*MLVQPGSSAELESPRVVEEIMMNLGGKQMSHAEHVRSRVPERHLTLIATREVDGVRQSFMNEEIMAASAHMGLDCITTVEGVRLVVGDTEMVDVPAFGSSPLPCRIASL 789
            DL ++H  + EY  AE VDG + +   +ALRS +F W NL EQL+ VW++T RPSR+SLQ+LL L         R++    PR  E +     ++ P       T   + G    +      +L+Q      L  PRVVEE   N GG  MS +E  ++ +P+ H+T +AT   D   +++MN +++ + +HMGL C+T  +GV+++VGDT M  VP  G+ P PCR+A++
Sbjct:   25 DLKDMHKTLPEYKDAECVDGVDPQFLIDALRSRHFPWRNLMEQLIGVWAVTHRPSRKSLQILLGLFSFVDRQGYRFRPEDAPRSVEHLISRMRKRLPHLPVFERTINDKNGETAKAIDIPFNVLLQ----RMLSCPRVVEEWRKNFGGHVMSRSERAKNNLPDEHITPVATELADKACETYMNGKLVRSFSHMGLQCVTAGDGVQVMVGDTIMARVPDCGT-PQPCRLAAI 250
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BLAST of mRNA_Ecto-sp13_S_contig7668.18897.1 vs. uniprot
Match: A0A6H5JTN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTN6_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 7.900e-28
Identity = 76/202 (37.62%), Postives = 92/202 (45.54%), Query Frame = 1 
Query:  577 VPERHLTLIATREVDGVRQSFMNEEIMAASAHMGLDCITTVEGVRLVVGDTEMVDVPAFGSSPLPCRIASLFWQNKHSSSXXXXXXXXXXXXXXXXXXXX--------------------------------------------------------------SGHLVVRVSPFLGREHMPQEIKNKRRADDDDLSSVWEVTN 996
            VP+ H T IATRE DG R  FM+ +IM ASAHMGL+C+ T +GVRL+VGDT MV +PAFG+SP PCRIA++FWQN                                                                                       +GHLVVRV+PF+ R  MP  IK+KRR D D + SVWEVTN
Sbjct:   25 VPDFHFTPIATRESDGARGGFMSGDIMMASAHMGLECVATTDGVRLMVGDTAMVRLPAFGNSPHPCRIAAIFWQNTRKQRRRALELSGGNGGGVCRWFQALDTIDEEDEDAGSSPSSTXXGASWQXXXXXXXXXXXXXXXXXXXXXXXXETQQGRPGGGVQSTGHLVVRVNPFVFRSDMPDGIKSKRRRDQD-VESVWEVTN 225
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7668.18897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JE27_9PHAE1.590e-4935.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LGI1_9PHAE4.090e-3236.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTN6_9PHAE7.900e-2837.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7668contigEcto-sp13_S_contig7668:6355..7350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size997
Hectar predicted targeting categoryother localisation
Exons1
Cds size534
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464037.0119479-UTR-Ecto-sp13_S_contig7668:6354..68161681464037.0119479-UTR-Ecto-sp13_S_contig7668:6354..6816Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7668 6355..6816 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464037.0231144-CDS-Ecto-sp13_S_contig7668:6816..73501681464037.0231144-CDS-Ecto-sp13_S_contig7668:6816..7350Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7668 6817..7350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7668.18897.1prot_Ecto-sp13_S_contig7668.18897.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7668 6817..7350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7668.18897.1

>prot_Ecto-sp13_S_contig7668.18897.1 ID=prot_Ecto-sp13_S_contig7668.18897.1|Name=mRNA_Ecto-sp13_S_contig7668.18897.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=178bp
MLVQPGSSAELESPRVVEEIMMNLGGKQMSHAEHVRSRVPERHLTLIATR
EVDGVRQSFMNEEIMAASAHMGLDCITTVEGVRLVVGDTEMVDVPAFGSS
PLPCRIASLFWQNKHSSSTSREETMRGGDEEEEKEEEESGHLVVRVSPFL
GREHMPQEIKNKRRADDDDLSSVWEVTN
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mRNA from alignment at Ecto-sp13_S_contig7668:6355..7350+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7668.18897.1 ID=mRNA_Ecto-sp13_S_contig7668.18897.1|Name=mRNA_Ecto-sp13_S_contig7668.18897.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=996bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7668:6355..7350+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGGTGGAAAAGACCATGATTTCGGCTGTGGTAACGACGACCCTCATTA
CGAAGGAGGCGGGCCTGCCGGTTCGGGCGACTCATCTGCGGCTGGCGAGG
GTGATGCTCGTGCGCGTGAGCTGGATTTGGACAATGTGCACACCCGTATA
AACGAATACGTGGGGGCTGAAGTAGTGGACGGCCAGAACCTTCGTTTAGC
CCCCGAGGCGCTGAGGAGCCCATATTTTCAGTGGGTGAACCTCACAGAAC
AGCTGGTGTCCGTGTGGTCGCTGACGACACGCCCTTCGCGCAGATCGCTA
CAACTGTTGCTCGATCTTCTCCGCTACAAGGAAGGTTCAATCCCGAGATG
TTCCGAAGTCAGCTGAGCACCTCCTCAGCAGAGCCCGGGAGAGGTTGCCC
TTCCTTCGACTCGTGCGCCGGAAGGTGGAGGGTAAGGGTGGTCAGCCCGG
GCAGACTGTTGAATGCTCGTTCAACCTGGTTCTTCAGCGGAATTGGAGTC
ACCGCGAGTCGTGGAAGAGATCATGATGAACCTGGGCGGGAAACAGATGT
CACACGCCGAGCACGTTCGTAGTCGTGTACCTGAGCGCCACCTCACACTG
ATCGCCACCCGGGAGGTGGACGGAGTGAGGCAGAGCTTCATGAATGAGGA
AATCATGGCCGCATCTGCACACATGGGACTTGATTGTATCACGACGGTGG
AAGGGGTGCGACTCGTTGTGGGAGACACGGAAATGGTTGACGTACCGGCG
TTTGGATCATCACCCCTGCCGTGCAGGATAGCCTCGCTATTCTGGCAGAA
CAAGCATTCATCATCGACTTCACGGGAGGAGACGATGCGTGGGGGGGACG
AAGAGGAGGAGAAGGAGGAAGAGGAAAGCGGCCATCTTGTTGTGCGTGTG
AGCCCCTTTCTGGGGAGGGAGCACATGCCGCAAGAGATCAAGAACAAGCG
TCGGGCAGACGATGACGACCTCAGCTCTGTCTGGGAAGTCACGAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7668:6355..7350+

>mRNA_Ecto-sp13_S_contig7668.18897.1 ID=mRNA_Ecto-sp13_S_contig7668.18897.1|Name=mRNA_Ecto-sp13_S_contig7668.18897.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7668:6355..7350+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCGTTCAACCTGGTTCTTCAGCGGAATTGGAGTCACCGCGAGTCGT
GGAAGAGATCATGATGAACCTGGGCGGGAAACAGATGTCACACGCCGAGC
ACGTTCGTAGTCGTGTACCTGAGCGCCACCTCACACTGATCGCCACCCGG
GAGGTGGACGGAGTGAGGCAGAGCTTCATGAATGAGGAAATCATGGCCGC
ATCTGCACACATGGGACTTGATTGTATCACGACGGTGGAAGGGGTGCGAC
TCGTTGTGGGAGACACGGAAATGGTTGACGTACCGGCGTTTGGATCATCA
CCCCTGCCGTGCAGGATAGCCTCGCTATTCTGGCAGAACAAGCATTCATC
ATCGACTTCACGGGAGGAGACGATGCGTGGGGGGGACGAAGAGGAGGAGA
AGGAGGAAGAGGAAAGCGGCCATCTTGTTGTGCGTGTGAGCCCCTTTCTG
GGGAGGGAGCACATGCCGCAAGAGATCAAGAACAAGCGTCGGGCAGACGA
TGACGACCTCAGCTCTGTCTGGGAAGTCACGAAC
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