mRNA_Ecto-sp13_S_contig7661.18889.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7661.18889.1
Unique NamemRNA_Ecto-sp13_S_contig7661.18889.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7661.18889.1 vs. uniprot
Match: D8LBL2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBL2_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 2.040e-57
Identity = 104/118 (88.14%), Postives = 106/118 (89.83%), Query Frame = 1 
Query:    1 VAKLCALAHIELAPEGADGSCSSGNLDVYAVKKDVGAMLRCMQTMRRENDXXXXXXXXXRRGYQEIEGEEGEDGPWGGAVSWAAPLEEDVVSDGGIQKEVIGAAQHTDDGFFTAPKVV 354
            VAKLCALAHIELAPEGADGSCSSG LDV AVKKDVGAMLRCMQTMRRE D      XX  RG QEIEGEEGEDGPWGGAVSWAAPLEEDVVSDGGIQKEV+GAAQHT+DGFFTAPKVV
Sbjct:  113 VAKLCALAHIELAPEGADGSCSSGKLDVSAVKKDVGAMLRCMQTMRREIDDSSGGGXX--RGNQEIEGEEGEDGPWGGAVSWAAPLEEDVVSDGGIQKEVLGAAQHTEDGFFTAPKVV 228
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7661.18889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBL2_ECTSI2.040e-5788.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7661contigEcto-sp13_S_contig7661:1645..2993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1055
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_003540.1
Cds size357
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464036.536563-UTR-Ecto-sp13_S_contig7661:1644..23401681464036.536563-UTR-Ecto-sp13_S_contig7661:1644..2340Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7661 1645..2340 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464036.5484014-CDS-Ecto-sp13_S_contig7661:2340..24331681464036.5484014-CDS-Ecto-sp13_S_contig7661:2340..2433Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7661 2341..2433 -
1681464036.5584583-CDS-Ecto-sp13_S_contig7661:2729..29931681464036.5584583-CDS-Ecto-sp13_S_contig7661:2729..2993Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7661 2730..2993 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7661.18889.1prot_Ecto-sp13_S_contig7661.18889.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7661 2341..2993 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7661.18889.1

>prot_Ecto-sp13_S_contig7661.18889.1 ID=prot_Ecto-sp13_S_contig7661.18889.1|Name=mRNA_Ecto-sp13_S_contig7661.18889.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
VAKLCALAHIELAPEGADGSCSSGNLDVYAVKKDVGAMLRCMQTMRREND
DSGGGGGGGRRGYQEIEGEEGEDGPWGGAVSWAAPLEEDVVSDGGIQKEV
IGAAQHTDDGFFTAPKVV*
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mRNA from alignment at Ecto-sp13_S_contig7661:1645..2993-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7661.18889.1 ID=mRNA_Ecto-sp13_S_contig7661.18889.1|Name=mRNA_Ecto-sp13_S_contig7661.18889.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1349bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7661:1645..2993- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGCCAAGCTGTGCGCACTTGCGCACATCGAACTCGCACCCGAAGGCGC
CGATGGCAGCTGCAGCAGCGGGAACCTCGACGTCTACGCCGTAAAGAAAG
ACGTCGGGGCTATGCTAAGGTGCATGCAGACCATGCGAAGGGAGAACGAC
GACAGTGGCGGCGGCGGCGGCGGCGGGCGCAGGGGTTACCAAGAAATTGA
AGGGGAAGAAGGCGAGGACGGGCCTTGGGGGGGAGCTGTATCGTGGGCCG
CGCCATTGGAAGAGGTGAGTTCCAAATGAGCTGCGATTTTTTCACTAACA
CGCACAATGTTTTCCGTGCCTACCTTGGGGCGCCGATGGTAACCACGGAT
TATGAATCCCCCCTGAGAGGTTGGCCCAACGGATGGCTATTGGTGCGCGA
TGGTTTTGCTTTGCCCACGTCGACGACTTTTGCTTGCCTCGTAGCGCTTG
CTCTCATCATTCGTCATTTGACGTTCCCCGCCAGCCCTTCATGTTGTGCC
GCCAACGACCTCCCCTCCTACAACCCCCCGCCCCCCCCGAACGAACTACA
ATATTGGCAGGACGTGGTATCAGATGGAGGCATACAAAAGGAAGTAATAG
GAGCGGCCCAACACACAGATGACGGGTTCTTCACCGCCCCCAAGGTGGTG
TAAATAGAGAGAGCTATCGAGCGGTGGGCACATAGGAGACCCCGGGTGAT
GTGATTCCGGCTTCCTGGGAACTTCGGCTTGGCGCAGGCCATGGTCATGG
ATTTTGATGTCCAACGCGTCCTGGTGATGGAGAGCAGTTGGTCGCGAGAG
AGCCCAGCGTTTCGAGGGGAAGGGGTGGTGATGAAGGACGTGATGGCCTA
CAGTATAAGGTCGTGTTGTTTGTTGTTTCTGGTGTTGAATGGTGTATTGA
CATCTAAAATGAACAGCATTCTGGTATCGTGGTCACACATTCTCTCTCTT
ACTCTTTCATGGTGATCATTGTAGGGTGTTCTTGCCTCAGCCCTTTCTCA
GCGCTAGTCGGTATCCAAGCACTGCCGCTCTTTCTGCGCAACCGCGTTTG
TTTGTGCTGGAATTGCTGGTGCTGGTCCGGGTGGCCGGTCAAAGCAACCA
CACTCCGGACTCTCCGCTCACCCAGAGTTGAGGACTCCGTAGTCCCGGTG
TCTATTTTTGTTGTGGTGACGGCATCAACCCGCAGACGATCATTTGTTTT
TAGTAACATCGACCGATGTTGTTGTGTAAGCACGCAAGGTTCGTGAGCGA
GGCGGTATTCGGCATACCCGTAGCCCTAAAAACCGTGAAATAGTATCGAT
GATCACGGCATGTGGTATTGATGGATGGTCAAAGAAAGGCGTCTTTGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7661:1645..2993-

>mRNA_Ecto-sp13_S_contig7661.18889.1 ID=mRNA_Ecto-sp13_S_contig7661.18889.1|Name=mRNA_Ecto-sp13_S_contig7661.18889.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7661:1645..2993- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGCCAAGCTGTGCGCACTTGCGCACATCGAACTCGCACCCGAAGGCGC
CGATGGCAGCTGCAGCAGCGGGAACCTCGACGTCTACGCCGTAAAGAAAG
ACGTCGGGGCTATGCTAAGGTGCATGCAGACCATGCGAAGGGAGAACGAC
GACAGTGGCGGCGGCGGCGGCGGCGGGCGCAGGGGTTACCAAGAAATTGA
AGGGGAAGAAGGCGAGGACGGGCCTTGGGGGGGAGCTGTATCGTGGGCCG
CGCCATTGGAAGAGGACGTGGTATCAGATGGAGGCATACAAAAGGAAGTA
ATAGGAGCGGCCCAACACACAGATGACGGGTTCTTCACCGCCCCCAAGGT
GGTGTAA
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