mRNA_Ecto-sp13_S_contig76480.18867.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig76480.18867.1
Unique NamemRNA_Ecto-sp13_S_contig76480.18867.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig76480.18867.1 vs. uniprot
Match: A0A6H5K2H7_9PHAE (DEP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2H7_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 9.410e-55
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 1
Query:    1 IQEVANRMRRELEIVDRKYRLRTYPSCFVGSDAVQWMIKSGLASDVAGAEALGDLLIDHGVFFHVTRRHMFENRRLFYRFMHDRLED 261
            I+EVANRMRRELEIVDRKYRLRTYPSCFVGSDAVQWMIKSGLASDVAGAEALGDLLIDHGVFFHVTRRHMFENRRLFYRFMHDRLED
Sbjct:   13 IKEVANRMRRELEIVDRKYRLRTYPSCFVGSDAVQWMIKSGLASDVAGAEALGDLLIDHGVFFHVTRRHMFENRRLFYRFMHDRLED 99          
BLAST of mRNA_Ecto-sp13_S_contig76480.18867.1 vs. uniprot
Match: D7FIE7_ECTSI (DEP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE7_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.960e-20
Identity = 48/84 (57.14%), Postives = 57/84 (67.86%), Query Frame = 1
Query:    1 IQEVANRMRRELEIVDRKYRLRTYPSCFVGSDAVQWMIK-SGLASDVAGAEALGDLLIDHGVFFHVTRRHMFENRRLFYRFMHD 249
            I+E+ ++M  EL I DR YRLRTY  CFVG DAVQW+IK S   S    A ALG+LL+D G F HVTR H F++  LFYRF  D
Sbjct:   21 IKELGDKMHAELRITDRTYRLRTYKQCFVGKDAVQWLIKASSRVSSTEEAVALGNLLMDLGYFHHVTRDHPFQDSGLFYRFAED 104          
BLAST of mRNA_Ecto-sp13_S_contig76480.18867.1 vs. uniprot
Match: A0A4Y6Q314_9DELT (FAD-containing oxidoreductase n=2 Tax=Persicimonas caeni TaxID=2292766 RepID=A0A4Y6Q314_9DELT)

HSP 1 Score: 91.7 bits (226), Expect = 1.120e-19
Identity = 42/81 (51.85%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    7 EVANRMRRELEIVDRKYRLRTYPSCFVGSDAVQWMIKSGLASDVAGAEALGDLLIDHGVFFHVTRRHMFENRRLFYRFMHD 249
            E+  ++R  +EI DR YRL TY  CFVG +A  WM+++G+A D+  AE +G+LL++ GVF HV R H FEN  LFYRF  D
Sbjct:    5 ELIEKLRENVEITDRTYRLETYEDCFVGEEACAWMVEAGVARDIEEAERIGNLLLEAGVFHHVLREHKFENDYLFYRFSSD 85          
BLAST of mRNA_Ecto-sp13_S_contig76480.18867.1 vs. uniprot
Match: A0A0G4FLL1_VITBC (DEP domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FLL1_VITBC)

HSP 1 Score: 84.0 bits (206), Expect = 5.720e-17
Identity = 40/83 (48.19%), Postives = 59/83 (71.08%), Query Frame = 1
Query:    1 IQEVANRMRRELEIVDRKYRLRTYPSCFVGSDAVQWMIKSGLASDVAGAEALGDLLIDHGVFFHVTRRHMFENRRLFYRFMHD 249
            +Q++A+++R +LEI DR+Y L TY  CF+GSDAV+W++ +G A  V  A  +G L++D G+F HVTR H  ++  LFYRF  D
Sbjct:   21 VQDLADQIRAKLEIRDRRYHLTTYTKCFLGSDAVKWLMGNGHAETVEDALLVGQLMMDQGMFAHVTRDHSLKDESLFYRFALD 103          
BLAST of mRNA_Ecto-sp13_S_contig76480.18867.1 vs. uniprot
Match: A0A388LFS9_CHABU (DEP domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LFS9_CHABU)

HSP 1 Score: 82.8 bits (203), Expect = 1.470e-16
Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = 1
Query:    7 EVANRMRRELEIVDRKYRLRTYPSCFVGSDAVQWMIKSGLASDVAGAEALGDLLIDHGVFFHVTRRHMFENRRLFYRFMHDRLE 258
            E+  ++R  LEI DR Y L+TY SCFVGS+AV +MIKSG+ S       LG+LL+   VF HV + H F+N  LFYRF  D  E
Sbjct:  158 EITEKLRSGLEIKDRTYLLKTYKSCFVGSEAVAFMIKSGMVSSEEDGVHLGNLLMQQKVFHHVVKDHTFKNAYLFYRFAQDETE 241          
BLAST of mRNA_Ecto-sp13_S_contig76480.18867.1 vs. uniprot
Match: F2U0W6_SALR5 (Mercuric reductase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U0W6_SALR5)

HSP 1 Score: 82.4 bits (202), Expect = 1.990e-16
Identity = 39/77 (50.65%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   10 VANRMRRELEIVDRKYRLRTYPSCFVGSDAVQWMIKSGLASDVAGAEALGDLLIDHGVFFHVTRRHMFENRRLFYRF 240
            +  R+ + LE+ DR+YRL++Y +CFVGSDAV  M+ SG+ +    A  LG++L+D G   HV R H FEN+RLFYRF
Sbjct:   10 IVMRLEQGLEVKDRRYRLKSYKNCFVGSDAVALMMSSGITNTEEDAVLLGNVLLDAGYIAHVLREHRFENKRLFYRF 86          
BLAST of mRNA_Ecto-sp13_S_contig76480.18867.1 vs. uniprot
Match: A0A7S3ZB25_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZB25_9EUKA)

HSP 1 Score: 80.5 bits (197), Expect = 9.440e-16
Identity = 40/81 (49.38%), Postives = 52/81 (64.20%), Query Frame = 1
Query:    7 EVANRMRRELEIVDRKYRLRTYPSCFVGSDAVQWMIKSGLASDVAGAEALGDLLIDHGVFFHVTRRHMFENRRLFYRFMHD 249
            ++A+ MR ++E+ DR+Y L TY  CFVGSDAVQ++I  G A  V  AEALG+ L   G   HVTR H  +N + FY F  D
Sbjct:   27 DIASDMRSKIEVKDRQYHLHTYKKCFVGSDAVQYLIDEGFAESVEDAEALGEELTHSGEIVHVTRDHSLKNGKYFYYFKQD 107          
BLAST of mRNA_Ecto-sp13_S_contig76480.18867.1 vs. uniprot
Match: A0A0D2X2F7_CAPO3 (Phosphoinositide phospholipase C n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X2F7_CAPO3)

HSP 1 Score: 80.5 bits (197), Expect = 9.760e-16
Identity = 37/77 (48.05%), Postives = 53/77 (68.83%), Query Frame = 1
Query:   10 VANRMRRELEIVDRKYRLRTYPSCFVGSDAVQWMIKSGLASDVAGAEALGDLLIDHGVFFHVTRRHMFENRRLFYRF 240
            +A RM   LE+ DRK+ LRTY  CFVG++AV W++  G+A D   A  +G+L+I + +F HVT  H+F+N  LFYR+
Sbjct:  522 LAARMMSSLEVKDRKFLLRTYKDCFVGTEAVDWLLSRGVAEDEEDAVRIGNLMIKNNLFQHVTLDHLFKNENLFYRY 598          
BLAST of mRNA_Ecto-sp13_S_contig76480.18867.1 vs. uniprot
Match: UPI001BBD1E47 (FAD-containing oxidoreductase n=2 Tax=Desulfosarcina cetonica TaxID=90730 RepID=UPI001BBD1E47)

HSP 1 Score: 80.1 bits (196), Expect = 1.290e-15
Identity = 40/85 (47.06%), Postives = 57/85 (67.06%), Query Frame = 1
Query:    1 IQEVANRMRRELEIVDRKY--RLRTYPSCFVGSDAVQWMIKSGLASDVAGAEALGDLLIDHGVFFHVTRRHMFENRRLFYRFMHD 249
            ++ +  R++   ++ DR Y  R RTYP CFVGS+AV  +IK G+A DV  A  +G++L+D GVF HV   H F+N +LFYRF+ D
Sbjct:   18 LESLTQRIKALFDVKDRTYGFRPRTYPKCFVGSEAVAQLIKKGIALDVEDAMHIGNMLLDAGVFHHVLDEHAFKNEKLFYRFISD 102          
BLAST of mRNA_Ecto-sp13_S_contig76480.18867.1 vs. uniprot
Match: A0A7S1TCV4_9RHOD (Hypothetical protein n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TCV4_9RHOD)

HSP 1 Score: 79.7 bits (195), Expect = 1.760e-15
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 1
Query:   46 DRKYRLRTYPSCFVGSDAVQWMIKSGLASDVAGAEALGDLLIDHGVFFHVTRRHMFENRRLFYRF 240
            DRK++LR++PSCFVG +AVQW++  G A++   A  LGD +I  GVF HV R H F+N  LFYRF
Sbjct:   27 DRKFKLRSFPSCFVGFEAVQWLVDHGFAANEEDAVRLGDSMIHAGVFHHVLREHSFKNENLFYRF 91          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig76480.18867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2H7_9PHAE9.410e-5598.85DEP domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7FIE7_ECTSI1.960e-2057.14DEP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A4Y6Q314_9DELT1.120e-1951.85FAD-containing oxidoreductase n=2 Tax=Persicimonas... [more]
A0A0G4FLL1_VITBC5.720e-1748.19DEP domain-containing protein n=1 Tax=Vitrella bra... [more]
A0A388LFS9_CHABU1.470e-1651.19DEP domain-containing protein n=1 Tax=Chara brauni... [more]
F2U0W6_SALR51.990e-1650.65Mercuric reductase n=1 Tax=Salpingoeca rosetta (st... [more]
A0A7S3ZB25_9EUKA9.440e-1649.38Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A0D2X2F7_CAPO39.760e-1648.05Phosphoinositide phospholipase C n=1 Tax=Capsaspor... [more]
UPI001BBD1E471.290e-1547.06FAD-containing oxidoreductase n=2 Tax=Desulfosarci... [more]
A0A7S1TCV4_9RHOD1.760e-1555.38Hypothetical protein n=2 Tax=Compsopogon caeruleus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig76480contigEcto-sp13_S_contig76480:2..613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score161.8
Seed ortholog evalue1.4e-37
Seed eggNOG ortholog2880.D7FIE8
Model size264
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Domain found in Dishevelled, Egl-10, and Pleckstrin
EggNOG OGs2D0ED@1,2SDWM@2759
Cds size243
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464034.8356457-CDS-Ecto-sp13_S_contig76480:1..1991681464034.8356457-CDS-Ecto-sp13_S_contig76480:1..199Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig76480 2..199 -
1681464034.8476675-CDS-Ecto-sp13_S_contig76480:547..5921681464034.8476675-CDS-Ecto-sp13_S_contig76480:547..592Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig76480 548..592 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464034.8591383-UTR-Ecto-sp13_S_contig76480:592..6131681464034.8591383-UTR-Ecto-sp13_S_contig76480:592..613Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig76480 593..613 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig76480.18867.1prot_Ecto-sp13_S_contig76480.18867.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig76480 2..592 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig76480.18867.1

>prot_Ecto-sp13_S_contig76480.18867.1 ID=prot_Ecto-sp13_S_contig76480.18867.1|Name=mRNA_Ecto-sp13_S_contig76480.18867.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
MRRELEIVDRKYRLRTYPSCFVGSDAVQWMIKSGLASDVAGAEALGDLLI
DHGVFFHVTRRHMFENRRLFYRFMHDRLED*
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mRNA from alignment at Ecto-sp13_S_contig76480:2..613-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig76480.18867.1 ID=mRNA_Ecto-sp13_S_contig76480.18867.1|Name=mRNA_Ecto-sp13_S_contig76480.18867.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=612bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76480:2..613- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCCAGGAGGTGGCCAACCGCATGCGGAGGGAGCTCGAAATTGTAGATCG CAAGTACCGTCTGCGGGTGAGTGGATAATTGGCCCAACGCCAGTGATTGC ATGCCTGACGTGTTGCAAGCCAACCCACGTGGCGGAGCATGTCAAGTTCG ACGTCTGTCTCCCGCTTTCAGGACTTGCTTAATCGAACGAAAGCTTTTCT CAATGCCTTCCAGCTAAAACACGACAACCGGTACTACAGTAGTCACAGCG AGGCGAACCCGGTAACGCAGAAGGCGCCGCCACTGTTTTCATGGCGATGC CCATTCCTTCTTGCGAAGGAGACTTTCTGCAGGATACGGCTTGTCTTCAA CAATCGACCCGGTTGTGGCCCCTCACTTACGAGACGTGTTGGACTTTCAT TGCTCTCTCGACAGACGTACCCGTCGTGCTTCGTCGGCAGCGACGCGGTG CAGTGGATGATAAAGTCGGGGCTGGCGTCGGACGTGGCGGGCGCAGAGGC TCTCGGCGACCTGCTCATCGACCACGGAGTGTTCTTCCACGTAACACGGC GACACATGTTCGAGAACCGCCGGCTGTTTTATCGGTTCATGCATGACCGA CTCGAGGACTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig76480:2..613-

>mRNA_Ecto-sp13_S_contig76480.18867.1 ID=mRNA_Ecto-sp13_S_contig76480.18867.1|Name=mRNA_Ecto-sp13_S_contig76480.18867.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76480:2..613- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGAGGGAGCTCGAAATTGTAGATCGCAAGTACCGTCTGCGGACGTA
CCCGTCGTGCTTCGTCGGCAGCGACGCGGTGCAGTGGATGATAAAGTCGG
GGCTGGCGTCGGACGTGGCGGGCGCAGAGGCTCTCGGCGACCTGCTCATC
GACCACGGAGTGTTCTTCCACGTAACACGGCGACACATGTTCGAGAACCG
CCGGCTGTTTTATCGGTTCATGCATGACCGACTCGAGGACTAA
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