mRNA_Ecto-sp13_S_contig12243.1887.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12243.1887.1
Unique NamemRNA_Ecto-sp13_S_contig12243.1887.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12243.1887.1 vs. uniprot
Match: A0A6H5L0F7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0F7_9PHAE)

HSP 1 Score: 305 bits (782), Expect = 1.030e-101
Identity = 173/215 (80.47%), Postives = 177/215 (82.33%), Query Frame = 1 
Query:    1 RAFTAMQMLATIVCSVSVLLLALAFFRPEAGKCASARTLAFVGGALMATYALFQLVAVVLAGVLAQEFDNLPNDDDTSYFSGYDGYYTFWDAGYEAEVGATFGVGVTALILAVIMTVALCLCARRTGDGPLYKCCYSLMLANKSNGIPSSASGGGVGGGGAKGVPVAADLREGSQPTSVAAARPGATEQPSQWQHYQQAQPQRQPPPRYDTLPSA 645
            RAFTAMQMLATIVCSVSVLLLALAFFRPEAGKCAS RTLAFVGGALMATYALFQLVAVVLA VLAQEFDNLPNDDDTSY SGYDG+YTF++AGYEAEVG TFGVGVTALILAVIMTV LCLCA RTGDGPLYKCC+SLMLANKSNGIPSS   GG      KGVPV ADL     P SVAAARPGATEQPSQ             PP Y  LPSA
Sbjct:   96 RAFTAMQMLATIVCSVSVLLLALAFFRPEAGKCASTRTLAFVGGALMATYALFQLVAVVLAAVLAQEFDNLPNDDDTSYLSGYDGFYTFFEAGYEAEVGPTFGVGVTALILAVIMTVVLCLCATRTGDGPLYKCCHSLMLANKSNGIPSSGGEGGXXXXXXKGVPVVADL-----PASVAAARPGATEQPSQXXXXXXXXXXXXXPPPYGILPSA 305
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BLAST of mRNA_Ecto-sp13_S_contig12243.1887.1 vs. uniprot
Match: A0A6H5KJK8_9PHAE (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJK8_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 5.440e-20
Identity = 59/145 (40.69%), Postives = 87/145 (60.00%), Query Frame = 1 
Query:    1 RAFTAMQMLATIVCSVSVLLLALAFFRPEAG-KCASARTLAFVGGALMATYALFQLVAVVLAGVLAQEFDNLPNDDDTSYFSGYDGYYTFWDAGYEAEVGATFGVGVTALILAVIMTVALCLCARRTGDGPLYKCCYSLMLANKS 432
            +AFTAMQ +A +V SVS++L  LA FRP AG KC S ++LA   G+LM  +A F+++A VL  V+ +E D    + +T +  G            EA++GATFG+ V A++L V+  V++   AR +GDGP +KC    M  N +
Sbjct:  131 KAFTAMQFIAAVVVSVSMVLFTLALFRPAAGLKCCSVKSLAIAAGSLMMAFAFFEMLAFVLIIVIEKELDG---EFNTGFGFG------------EADLGATFGLAVVAVVLGVVQAVSVLTFARSSGDGPFFKCLNECMAMNNA 260
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12243.1887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0F7_9PHAE1.030e-10180.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJK8_9PHAE5.440e-2040.69WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12243contigEcto-sp13_S_contig12243:265..1458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size654
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_009190.1
Cds size639
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462651.2419717-UTR-Ecto-sp13_S_contig12243:264..2791681462651.2419717-UTR-Ecto-sp13_S_contig12243:264..279Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12243 265..279 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462651.2524593-CDS-Ecto-sp13_S_contig12243:279..4781681462651.2524593-CDS-Ecto-sp13_S_contig12243:279..478Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12243 280..478 +
1681462651.267297-CDS-Ecto-sp13_S_contig12243:1018..14581681462651.267297-CDS-Ecto-sp13_S_contig12243:1018..1458Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12243 1019..1458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12243.1887.1prot_Ecto-sp13_S_contig12243.1887.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12243 280..1458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12243.1887.1

>prot_Ecto-sp13_S_contig12243.1887.1 ID=prot_Ecto-sp13_S_contig12243.1887.1|Name=mRNA_Ecto-sp13_S_contig12243.1887.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=213bp
MQMLATIVCSVSVLLLALAFFRPEAGKCASARTLAFVGGALMATYALFQL
VAVVLAGVLAQEFDNLPNDDDTSYFSGYDGYYTFWDAGYEAEVGATFGVG
VTALILAVIMTVALCLCARRTGDGPLYKCCYSLMLANKSNGIPSSASGGG
VGGGGAKGVPVAADLREGSQPTSVAAARPGATEQPSQWQHYQQAQPQRQP
PPRYDTLPSAGF*
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mRNA from alignment at Ecto-sp13_S_contig12243:265..1458+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12243.1887.1 ID=mRNA_Ecto-sp13_S_contig12243.1887.1|Name=mRNA_Ecto-sp13_S_contig12243.1887.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1194bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12243:265..1458+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGCCTTCACTGCAATGCAGATGTTGGCCACCATCGTATGCTCGGTGTC
CGTGTTGCTGCTAGCCTTGGCCTTCTTCCGACCGGAGGCAGGAAAGTGCG
CCTCGGCCAGGACCCTGGCGTTTGTTGGGGGTGCGCTCATGGCGACGTAT
GCCCTGTTTCAGCTCGTGGCGGTGGTGCTGGCTGGCGTGCTTGCGCAGGA
GTTCGACAACTTGCGTGAGTCATCATCCAAACTCAGCAATTGCTGCTCAC
CGTATTTCTGGTCTGCTTCTTTGAGGCTCTGTTCGTTTGCGTTCTCTGCA
GCGGTTGTGTGTTGCAAGGTTCCTGCGTCTGTGGTATCCAGAGCCTCGCT
GCCCCCCCTCCCCCCCGCCCTCCCCCCTCCCCATGTTTTTTTTGTTGGTT
GCCTCCTGCCGGAGAGTTGAAGGGTTCTGTTCGCGCCCCATCATGGAACA
TGATCATCCAGACCTTCCATGGATAGATGTACGTCGGCGCTTGTAATGCT
CCACCACCTGCTGCACGCCTCGCTTCTCCCTGCGGCGTGCAAAGTACTCG
AGGGGTAGTACCCGTAGCTGCTGCGCCAGTAACCATCACCTGGATTTTCG
CTGCGCTTGTCTGCCTCCATGTATTCGCCCCCCCCTTGTTCTGTCTCTCA
ACACAATTTCAATACCCTCACCCCCCCATCCACACACGGAATTGTCCATC
TCCTTTCGGCCTTTGGTCGCGGGGCACTGATGCGAATCAATGTCGACTTT
TCAGCGAATGATGACGACACGTCCTACTTCAGCGGCTACGATGGTTACTA
CACTTTCTGGGACGCTGGCTACGAGGCAGAAGTCGGGGCGACTTTCGGTG
TGGGGGTGACGGCCTTGATCCTCGCCGTCATTATGACGGTTGCTCTTTGC
CTGTGCGCGAGGCGCACGGGGGACGGCCCCCTCTACAAGTGCTGCTACAG
CCTCATGCTGGCCAACAAGAGCAACGGCATCCCCAGCAGTGCTAGTGGAG
GTGGCGTAGGCGGGGGCGGCGCGAAAGGGGTTCCTGTTGCCGCTGACCTG
CGGGAAGGATCACAGCCTACCTCTGTGGCTGCGGCGAGACCAGGAGCAAC
CGAGCAGCCGTCGCAGTGGCAGCATTACCAACAGGCGCAACCGCAACGGC
AGCCGCCCCCACGGTACGACACTTTGCCGTCGGCGGGGTTTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12243:265..1458+

>mRNA_Ecto-sp13_S_contig12243.1887.1 ID=mRNA_Ecto-sp13_S_contig12243.1887.1|Name=mRNA_Ecto-sp13_S_contig12243.1887.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=639bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12243:265..1458+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGATGTTGGCCACCATCGTATGCTCGGTGTCCGTGTTGCTGCTAGC
CTTGGCCTTCTTCCGACCGGAGGCAGGAAAGTGCGCCTCGGCCAGGACCC
TGGCGTTTGTTGGGGGTGCGCTCATGGCGACGTATGCCCTGTTTCAGCTC
GTGGCGGTGGTGCTGGCTGGCGTGCTTGCGCAGGAGTTCGACAACTTGCC
GAATGATGACGACACGTCCTACTTCAGCGGCTACGATGGTTACTACACTT
TCTGGGACGCTGGCTACGAGGCAGAAGTCGGGGCGACTTTCGGTGTGGGG
GTGACGGCCTTGATCCTCGCCGTCATTATGACGGTTGCTCTTTGCCTGTG
CGCGAGGCGCACGGGGGACGGCCCCCTCTACAAGTGCTGCTACAGCCTCA
TGCTGGCCAACAAGAGCAACGGCATCCCCAGCAGTGCTAGTGGAGGTGGC
GTAGGCGGGGGCGGCGCGAAAGGGGTTCCTGTTGCCGCTGACCTGCGGGA
AGGATCACAGCCTACCTCTGTGGCTGCGGCGAGACCAGGAGCAACCGAGC
AGCCGTCGCAGTGGCAGCATTACCAACAGGCGCAACCGCAACGGCAGCCG
CCCCCACGGTACGACACTTTGCCGTCGGCGGGGTTTTAG
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