mRNA_Ecto-sp13_S_contig12240.1886.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12240.1886.1 vs. uniprot
Match: D8LPR9_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPR9_ECTSI) HSP 1 Score: 429 bits (1102), Expect = 6.340e-145 Identity = 293/419 (69.93%), Postives = 301/419 (71.84%), Query Frame = 1
Query: 130 MPSARAVGPPPTVSSDVFEIVADGNADVLEDMIAFSGAQHMCELRSKKKEDYGRNLLHCAVASGQRLTLQVLLKHEAFDANQANETRLRQVDSVYTRSTPLMEAVKIGRLDLIESLVAAGARLDVQAGFFCRDDVNGDTVLHWAAREVSAAFLRQVLHLARKHGRTTQQMLAALQLKNNSGENAADVGANDVARESIRRLVSGEEAPGLPPKKHNSSSARTSQSGVKSNGRVSYAAAPEAGGEGGLRPSQSGPVGSSSAGLRSSQSGHTTGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHSSPGTPPGVVLGALTGGGGSTSPTPXXXXXXXXXXXGTAAVVGEGVARGQEGQPTKPLLLPKVKGVVKSYAAIVGPANAKKNEEGTV 1386
MPSARAVGPPPTVSSDVFEIVADGNADVLEDMIAFSGAQHMCELRSKKKEDYGRNLLHCAVASGQR TLQVLLKHEAFDAN QVDSVYTRSTPLMEAVKIGRLDLIE ++AAGARL+VQ LKNNSGENAADVGANDVARESIRRLVSGEEAPGLPPKKHNSSS R SQSG+KSNGR YAAAPEAGG GGLRPSQSGPVGSSS GHTTGSXXXXXXXXXXXXXXXX XXXXXXXXXXXX XX RHSSPGT PGV+LG LTGGGGST+PTP XX VGEGVARGQEGQPTKPLLLPKVKGVVKSYAAIVG A+AKKNEEG +
Sbjct: 1 MPSARAVGPPPTVSSDVFEIVADGNADVLEDMIAFSGAQHMCELRSKKKEDYGRNLLHCAVASGQRPTLQVLLKHEAFDAN--------QVDSVYTRSTPLMEAVKIGRLDLIECVIAAGARLNVQ-------------------------------------------------LKNNSGENAADVGANDVARESIRRLVSGEEAPGLPPKKHNSSSVRASQSGIKSNGRALYAAAPEAGGGGGLRPSQSGPVGSSSXXXXXXXXGHTTGSXXXXXXXXXXXXXXXXAGRNPETRNSQHQHXXXXXXXXXXXXPGSAXXSPTPQPAPLTRHSSPGTRPGVMLGVLTGGGGSTAPTPEGGMAVAMAXXXXXXXVGEGVARGQEGQPTKPLLLPKVKGVVKSYAAIVGAADAKKNEEGMI 362
BLAST of mRNA_Ecto-sp13_S_contig12240.1886.1 vs. uniprot
Match: T0R332_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0R332_SAPDV) HSP 1 Score: 68.6 bits (166), Expect = 1.420e-8 Identity = 55/186 (29.57%), Postives = 89/186 (47.85%), Query Frame = 1
Query: 175 DVFEIVADGNADVLEDMIAFSGAQHMCELRSKKKEDYGRNLLHCAVASGQRLTLQVLLKHEA-FDANQANETRLRQVDSVYTRSTPLMEAVKIGRLDLIESLVAAGARLDVQAGFFCRDDVNGDTVLHWAAREVSAAFLRQVLHLARKHGRTTQ-QMLAALQLKNNSGENAADVGANDVARESIRR 726
D++ G DVL+ + L ++ ++ R LLH A SG ++ LL+ A DA VDSV +++TPL+EA + GRLD+++ L++ GA + Q D +GDT LHWAAR + V+H+ R ++T + L ++N G +V + IR+
Sbjct: 434 DIWSATKTGKLDVLQKYFLIESPAKLLVLHNRDVDEGRRTLLHTACWSGHVSVVEYLLRMGADVDA----------VDSVLSKTTPLIEAARAGRLDVVKLLLSEGACVSHQ-------DFHGDTPLHWAARR---GWNSLVMHMVRFTEQSTPGSVQRLLSIENYHGYICVEVAPTSYLSDIIRK 599
BLAST of mRNA_Ecto-sp13_S_contig12240.1886.1 vs. uniprot
Match: A0A067BMU7_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BMU7_SAPPC) HSP 1 Score: 65.1 bits (157), Expect = 9.900e-8 Identity = 47/147 (31.97%), Postives = 73/147 (49.66%), Query Frame = 1
Query: 175 DVFEIVADGNADVLEDMIAFSGAQHMCELRSKKKEDYGRNLLHCAVASGQRLTLQVLLKHEA-FDANQANETRLRQVDSVYTRSTPLMEAVKIGRLDLIESLVAAGARLDVQAGFFCRDDVNGDTVLHWAAREVSAAFLRQVLHLAR 612
D++ G DVL+ + L ++ ++ R LLH A G ++ LL+ A DA VDSV +++TPL+EA + GRLD+++ L++ GA + Q D +GDT LHWAAR + V+H+ R
Sbjct: 138 DIWAATKTGKLDVLQKYFLIESPAKLLVLHNRDVDEGRRTLLHTACWWGHVAVVEYLLRMGADVDA----------VDSVLSKTTPLIEAARAGRLDVVKLLLSEGACVSHQ-------DFHGDTPLHWAARR---GWNSLVMHMVR 264
BLAST of mRNA_Ecto-sp13_S_contig12240.1886.1 vs. uniprot
Match: A0A1V9Z6V3_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z6V3_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 4.910e-6 Identity = 45/146 (30.82%), Postives = 71/146 (48.63%), Query Frame = 1
Query: 175 DVFEIVADGNADVLEDMIAFSGAQHMCELRSKKKEDYGRNLLHCAVASGQRLTLQVLLKHEAFDANQANETRLRQVDSVYTRSTPLMEAVKIGRLDLIESLVAAGARLDVQAGFFCRDDVNGDTVLHWAAREVSAAFLRQVLHLAR 612
D++ G +VL+ + + +K ++ R LLH A G L++ LL H D + VDSV ++TPL+EA + GRL++++ L+ GA + Q D +GDT LHWAAR + V+H+ R
Sbjct: 411 DIWLATKAGKLEVLKKYFLVESPAKLLVMHNKDLDEGRRTLLHTACWWGH-LSIVELLVHLGADVD--------AVDSVLGKTTPLIEAARAGRLEIVKLLLDEGACVSHQ-------DCHGDTALHWAARR---GWNSLVMHMVR 537
BLAST of mRNA_Ecto-sp13_S_contig12240.1886.1 vs. uniprot
Match: A0A485LJV1_9STRA (Aste57867_21814 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJV1_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 3.550e-5 Identity = 37/131 (28.24%), Postives = 63/131 (48.09%), Query Frame = 1
Query: 175 DVFEIVADGNADVLEDMIAFSGAQHMCELRSKKKEDYGRNLLHCAVASGQRLTLQVLLKHEAFDANQANETRLRQVDSVYTRSTPLMEAVKIGRLDLIESLVAAGARLDVQAGFFCRDDVNGDTVLHWAAR 567
DV+ +G DV+E + G+ + L +K + + R LLH A G + ++ A + +D++++++TPL+EA + G + L+ GA L Q D +GDT +HWAAR
Sbjct: 457 DVWTATKEGKLDVVEKFMLVEGSTKLLSLHNKGQNEGRRTLLHTAAWWGHHEVAEYFVRLGA---------EVDAMDTIHSKTTPLIEAARGGHRSICRLLLDHGACLTHQ-------DAHGDTAVHWAAR 571 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12240.1886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12240.1886.1 >prot_Ecto-sp13_S_contig12240.1886.1 ID=prot_Ecto-sp13_S_contig12240.1886.1|Name=mRNA_Ecto-sp13_S_contig12240.1886.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=464bp MRQSTSTQQSPRPTARRPTSSSQLGGRTSLGGKTARGASARSPMPSARAVback to top mRNA from alignment at Ecto-sp13_S_contig12240:106..3071+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12240.1886.1 ID=mRNA_Ecto-sp13_S_contig12240.1886.1|Name=mRNA_Ecto-sp13_S_contig12240.1886.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2966bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12240:106..3071+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12240:106..3071+ >mRNA_Ecto-sp13_S_contig12240.1886.1 ID=mRNA_Ecto-sp13_S_contig12240.1886.1|Name=mRNA_Ecto-sp13_S_contig12240.1886.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1392bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12240:106..3071+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |