mRNA_Ecto-sp13_S_contig7620.18832.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7620.18832.1
Unique NamemRNA_Ecto-sp13_S_contig7620.18832.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7620.18832.1 vs. uniprot
Match: A0A2D7IMQ3_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2D7IMQ3_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 3.420e-7
Identity = 28/69 (40.58%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:   13 FCPS---LFHVAPQGNN--KSSVLIFSSDRRYIGELQAGRRQGQGSFLYPDGSSYEGQWQDNVQHGQLT 204
            FC S   LF V   G++  K+ ++IF  +  Y G+L+ G+R G G ++YP+G++YEGQW++N+ +G+ T
Sbjct:    4 FCISSLILFAVILFGDSVPKNDIVIFGHN--YTGDLKDGKRHGNGHYIYPNGNTYEGQWENNLINGKGT 70
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BLAST of mRNA_Ecto-sp13_S_contig7620.18832.1 vs. uniprot
Match: A0A812TKT7_9DINO (PIP5K4 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812TKT7_9DINO)

HSP 1 Score: 54.7 bits (130), Expect = 4.110e-6
Identity = 22/54 (40.74%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:   37 APQGNNKSSVLIFSSDRRYIGELQAGRRQGQGSFLYPDGSSYEGQWQDNVQHGQ 198
            A   N   S+++F++  +YIG LQAGR++G G ++Y DGS+Y+G W  +   G+
Sbjct:  584 AQSENQGKSIVLFANGDKYIGGLQAGRKEGDGMYVYADGSAYKGPWSADSMDGE 637
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BLAST of mRNA_Ecto-sp13_S_contig7620.18832.1 vs. uniprot
Match: A0A812UGC9_9DINO (PIP5K6 protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812UGC9_9DINO)

HSP 1 Score: 53.1 bits (126), Expect = 1.420e-5
Identity = 20/47 (42.55%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   61 SVLIFSSDRRYIGELQAGRRQGQGSFLYPDGSSYEGQWQDNVQHGQL 201
            S+++F++  +YIG LQ GR++G G ++Y DGS+Y+G W  +   G+L
Sbjct:  612 SIVLFANGDKYIGGLQTGRKEGDGMYVYADGSAYKGPWSADSMDGEL 658
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BLAST of mRNA_Ecto-sp13_S_contig7620.18832.1 vs. uniprot
Match: A0A1Q9CE85_SYMMI (Phosphatidylinositol 4-phosphate 5-kinase 4 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9CE85_SYMMI)

HSP 1 Score: 52.8 bits (125), Expect = 2.080e-5
Identity = 20/47 (42.55%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   61 SVLIFSSDRRYIGELQAGRRQGQGSFLYPDGSSYEGQWQDNVQHGQL 201
            S+++F++  +YIG LQAGR+ G G ++Y DG++Y+G W  +   G+L
Sbjct: 1617 SIVLFANGDKYIGGLQAGRKDGDGMYVYADGAAYKGPWSADSMDGEL 1663
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BLAST of mRNA_Ecto-sp13_S_contig7620.18832.1 vs. uniprot
Match: A0A813BKC4_9DINO (PIP5K4 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813BKC4_9DINO)

HSP 1 Score: 52.8 bits (125), Expect = 2.090e-5
Identity = 20/47 (42.55%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   61 SVLIFSSDRRYIGELQAGRRQGQGSFLYPDGSSYEGQWQDNVQHGQL 201
            S+++F++  +YIG LQAGR+ G G ++Y DG++Y+G W  +   G+L
Sbjct: 2376 SIVLFANGDKYIGGLQAGRKDGDGMYVYADGAAYKGPWSADSMDGEL 2422
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7620.18832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2D7IMQ3_9BACT3.420e-740.58Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]
A0A812TKT7_9DINO4.110e-640.74PIP5K4 protein n=1 Tax=Symbiodinium natans TaxID=8... [more]
A0A812UGC9_9DINO1.420e-542.55PIP5K6 protein n=3 Tax=Symbiodinium TaxID=2949 Rep... [more]
A0A1Q9CE85_SYMMI2.080e-542.55Phosphatidylinositol 4-phosphate 5-kinase 4 n=1 Ta... [more]
A0A813BKC4_9DINO2.090e-542.55PIP5K4 protein n=2 Tax=Symbiodinium TaxID=2949 Rep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7620contigEcto-sp13_S_contig7620:6477..7175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size378
Hectar predicted targeting categoryother localisation
Exons2
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464032.019014-CDS-Ecto-sp13_S_contig7620:6476..67221681464032.019014-CDS-Ecto-sp13_S_contig7620:6476..6722Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7620 6477..6722 +
1681464032.0312586-CDS-Ecto-sp13_S_contig7620:7043..71751681464032.0312586-CDS-Ecto-sp13_S_contig7620:7043..7175Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7620 7044..7175 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7620.18832.1prot_Ecto-sp13_S_contig7620.18832.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7620 6477..7175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7620.18832.1

>prot_Ecto-sp13_S_contig7620.18832.1 ID=prot_Ecto-sp13_S_contig7620.18832.1|Name=mRNA_Ecto-sp13_S_contig7620.18832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
MPRFFCPSLFHVAPQGNNKSSVLIFSSDRRYIGELQAGRRQGQGSFLYPD
GSSYEGQWQDNVQHGQLTGSGALPDGGFVGISAVAIRKVARGGTCYYATG
ARYEGQFDGGKSHGRGTYFYANGNR*
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mRNA from alignment at Ecto-sp13_S_contig7620:6477..7175+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7620.18832.1 ID=mRNA_Ecto-sp13_S_contig7620.18832.1|Name=mRNA_Ecto-sp13_S_contig7620.18832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=699bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7620:6477..7175+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGCGCTTTTTCTGTCCCAGTCTTTTCCACGTTGCTCCCCAGGGCAA
CAATAAAAGTAGCGTACTCATCTTCTCATCTGACAGGCGGTATATCGGGG
AGTTGCAAGCAGGGCGCCGACAAGGTCAAGGGTCTTTCCTGTATCCTGAC
GGCTCCAGCTACGAGGGACAGTGGCAAGACAACGTGCAACATGGTCAGTT
GACCGGGTCTGGCGCGCTCCCCGATGGGGGCTTTGTCGGGATATCCGTCG
GTTTAGTCTTGTCTTACTCTATCCCTGTTTCACGTCTTCATCCACGGTTC
CCCGCATGTTTATTGCTCGATACTTTTCAAACAACGGACGTACCTGCGAT
GTACCACTGTGGTTGTAGCGTTCATTGCCTTTGTGCGCAGCCAAAATGAA
CGTCATTGTCCAGACTGTAGAGCAAGAGCCCAGGAGGCACGAGCCAGGAC
TACCTCTGTTTTTGTAGTGCCTTCTTCCCTCATCCGAGCTGCTGTTTGAA
TGTATTGGTTCTTCCACTTGGCAGGAGAGGGAACTGCGTGGTACGCCTCG
GGCATTCGTTACGTGAGGCAGTCGCTATACGGAAAGTCGCACGGGGAGGC
ACATGTTATTACGCCACGGGGGCGAGATACGAAGGGCAGTTCGATGGTGG
CAAGAGCCACGGCCGCGGAACCTACTTCTACGCCAATGGTAACAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7620:6477..7175+

>mRNA_Ecto-sp13_S_contig7620.18832.1 ID=mRNA_Ecto-sp13_S_contig7620.18832.1|Name=mRNA_Ecto-sp13_S_contig7620.18832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7620:6477..7175+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGCGCTTTTTCTGTCCCAGTCTTTTCCACGTTGCTCCCCAGGGCAA
CAATAAAAGTAGCGTACTCATCTTCTCATCTGACAGGCGGTATATCGGGG
AGTTGCAAGCAGGGCGCCGACAAGGTCAAGGGTCTTTCCTGTATCCTGAC
GGCTCCAGCTACGAGGGACAGTGGCAAGACAACGTGCAACATGGTCAGTT
GACCGGGTCTGGCGCGCTCCCCGATGGGGGCTTTGTCGGGATATCCGCAG
TCGCTATACGGAAAGTCGCACGGGGAGGCACATGTTATTACGCCACGGGG
GCGAGATACGAAGGGCAGTTCGATGGTGGCAAGAGCCACGGCCGCGGAAC
CTACTTCTACGCCAATGGTAACAGGTGA
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