mRNA_Ecto-sp13_S_contig761.18816.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig761.18816.1
Unique NamemRNA_Ecto-sp13_S_contig761.18816.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig761.18816.1 vs. uniprot
Match: A0A6H5KHA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA7_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 5.000e-38
Identity = 67/104 (64.42%), Postives = 86/104 (82.69%), Query Frame = 2 
Query:  167 MACPEGESFAVDSNVTYENSRSFNGCYEAIAESWGDQTAYFLDGEEEAGTPGMYPSSNFDD---EHDVWVLAYFTTEGEFSRRCKDAEEEDSSTVHPADVLQWD 469
            MAC +G+SF +DS+VTYE+S SF+GCYEA A+++  +T YFLDG+E  G PG+Y S+NFDD   EH  WVL Y+TT+GEF RRCKDA+EEDSST+HPA+V+QWD
Sbjct:    1 MACSDGDSFTIDSDVTYEDSLSFDGCYEASADTFNSETMYFLDGDEFIGYPGIYSSNNFDDDGDEHGTWVLGYYTTDGEFFRRCKDADEEDSSTLHPAEVVQWD 104
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BLAST of mRNA_Ecto-sp13_S_contig761.18816.1 vs. uniprot
Match: D7G7I5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I5_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 4.260e-10
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 2 
Query:  209 VTYENSRSFNGCYEAIAESWGDQTAYFLDGEEEAGTPGMYPSSNFDDEHDVWVLAYF----TTEGEF--SRRCKDAEEEDSSTVHPADVLQW 466
            V  + + + +GCYE    S  D   YFLDG E  G+  +Y SS+F D+H VWV+A        EG F  S  CKDA E+D++T+HP +V+QW
Sbjct:   10 VEVDYNSAVDGCYEDTTTSVNDLDGYFLDGVEAGGSSIVYASSSFRDDHFVWVVANVYDIDVEEGIFDVSITCKDAYEDDATTLHPVEVIQW 101
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig761.18816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KHA7_9PHAE5.000e-3864.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7I5_ECTSI4.260e-1043.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig761contigEcto-sp13_S_contig761:5088..10493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1685
Hectar predicted targeting categoryother localisation
Exons3
Cds size819
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464030.6937575-UTR-Ecto-sp13_S_contig761:5087..52531681464030.6937575-UTR-Ecto-sp13_S_contig761:5087..5253Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig761 5088..5253 +
1681464030.7498796-UTR-Ecto-sp13_S_contig761:9793..104931681464030.7498796-UTR-Ecto-sp13_S_contig761:9793..10493Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig761 9794..10493 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464030.7055922-CDS-Ecto-sp13_S_contig761:5253..54421681464030.7055922-CDS-Ecto-sp13_S_contig761:5253..5442Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig761 5254..5442 +
1681464030.720437-CDS-Ecto-sp13_S_contig761:7244..76171681464030.720437-CDS-Ecto-sp13_S_contig761:7244..7617Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig761 7245..7617 +
1681464030.731307-CDS-Ecto-sp13_S_contig761:9536..97931681464030.731307-CDS-Ecto-sp13_S_contig761:9536..9793Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig761 9537..9793 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig761.18816.1prot_Ecto-sp13_S_contig761.18816.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig761 5254..9793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig761.18816.1

>prot_Ecto-sp13_S_contig761.18816.1 ID=prot_Ecto-sp13_S_contig761.18816.1|Name=mRNA_Ecto-sp13_S_contig761.18816.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=273bp
MACPEGESFAVDSNVTYENSRSFNGCYEAIAESWGDQTAYFLDGEEEAGT
PGMYPSSNFDDEHDVWVLAYFTTEGEFSRRCKDAEEEDSSTVHPADVLQW
DCKDADDPSNSTLYPDEDAAVTITCGCDSPTPSPTPSPTPSDTLSPTTPT
SSSLTSSPTSSPTTPALDPASPSSPSSQLTTETSSGKGIPVGAIAGVAVA
GVLVVCFAILAVLFRTGRLKNCCGGSRNTAANDGVSPGYASDSVPNGGTS
VEATTGPTRGHYPVAHQYPAAV*
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mRNA from alignment at Ecto-sp13_S_contig761:5088..10493+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig761.18816.1 ID=mRNA_Ecto-sp13_S_contig761.18816.1|Name=mRNA_Ecto-sp13_S_contig761.18816.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5406bp|location=Sequence derived from alignment at Ecto-sp13_S_contig761:5088..10493+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTGCGAACCGGATATACGTCTAGGTTGAGTGCTTCGGCAAATCAAGGA
TTTAGGTCACACCACTGTGCTACGCTTGCTTGGCGGTGTTCTTAGCCGCC
GTGCATAGTACCAACCGGCAGCGGTCACCGCATCTCCCGCGTGAACTAAA
CAGGCCTCGCTCCGACATGGCTTGCCCGGAGGGAGAGTCGTTCGCTGTCG
ATTCTAACGTCACGTACGAGAATTCCCGAAGCTTCAATGGTTGCTACGAA
GCGATAGCGGAATCCTGGGGTGATCAAACCGCGTACTTTTTGGACGGAGA
AGAGGAGGCCGGCACACCGGGGATGTACCCTAGCAGCAACTTCGATGACG
AACATGTGAGTGAGGCCTCAGAATTTTGCAGAGTGTGAGGTTGGCCATGT
TTTCATGTATAGACTTTTGCTGGGTTTTTCACCCTGACCTTGCGAGAGTT
TACCCATAAAGGGCCGACTGTGGAAGCCACACTGACTGCTACAAGTATGC
TACGTTGGTGCATGGAACAGTGGCGGTGTGGTCGGTGCAGTAGGTTTCCT
TTGGTAGGACTAATTCGTGACACCTACCCGTTCAGTTTCATCACATGTGA
TGGGTGGGTCTTGGGCGAGTGACAAACTACATACGACATACGGTGGGTCG
GGATTCCCAGAATTCTCACCGCTTCCCACCGCATTCTCCGGTATACAAAG
GTTTGTTTTGACACCTGTTGAAGTACAGAGTGCGCGCCAATATGATGTTA
TCTATATGCTCACACGATGTCGTCGCGAGACATTAGACTTGATGTTTGAG
TGCATGCACCAAATTGAGGCCGATATGCATATATTTCGCCCCACGTGTTG
CCACCTCAGCCAAACATTGCGGCCACCACACGTTCAAATCAACTTTCGTG
CTGTGATAGTGAGGTGTACTGGCGTCCTACGTGTGGTCATCACACCTTGC
GATCAGTGCTCTTGTGGAAAGTGCACGTGTTGCGGTGGCGCTGTGGCGAG
GTCGTGCCGGCTCCTGCGGTAGACATGAGAACTCACCTCGCCACAACAAC
GCGAAAAATGCCACCTCGCTGATTGATAGAGTGCTTCCCACGAACTTCAC
ACGTGCGTCCGTATGCATGCGAATTCTTCTCGCATGATAATATCATTGAC
GAGCCCAGGTTTGCCTCTCCGACTCCTGTCCACCAAACAAGACAACAATC
CTTTGCCGTGTCTTCGTCACCGTACCTCACTACACCCGGACTTCATCGTG
CCGTCTGTGTATTTCCACCACCCACTACCCCCTCGCCGTTGATGTTGCGG
CGGGTATGGTTTGACACGCATTCCCTTAGAAGCCACGACTGCGGTCGCAC
TCTCCAAATATCGTCCGCAGACTACTGCTATACACTGCTATACCTGTTAC
ATTCATTCCCGAAAAACACCACTTGGGAATCTGTGGTGAAATATGCCACG
ATGATGAAACGATTCACAGTATCACGTCTCGCTTTCACGTCGTTCGCCTC
CTCCACGTATGTCACCACTTGGACAATTTTGACAGTTATATCCCGGCCTC
CTCTTCTCCACCATTCGTTTTTAGTTCCGGTGTCTTCTTTCTTTTCATCT
TTGCTTCTAGACCTTGCAAATATGCCATGAAGACTAAGCCGTGTCGCATC
GTCAACATTGAAACCGCGTGATTGATTTATCTTCCCCACAATATCTGCAC
ATATACATCGACTCCGTGCAGACATTCCCCGGTCCTGCGACGGGAGTCTG
GATGCTCGCCCCATTGGGTGGCGGGGAGCCAATCGTTCCTCCTAGTAGTA
CCCAAAGATGGTCTTGTCAAAGGGTTGTTATGTCGGGGTCACGGCCGGGT
CATCATACCATATTTTGTTGTGCTCGACAGAGGGCATTCAGGACACTCGT
TGGCTTTTTGCAGGTCGTTGGCGGCATTCGCCCTCCACGAACCGTTCATG
TGCCCTGTAGCGGCCAATCAATGTGCTTCGCTCGGTCAAACTAAAGGAAG
AATTACGGTTCTTCGAACGCTAGGGCTCTGTAACAATACATGAGGTCTTA
GGTGTGGATGATTGGGCTGGGGTACGCCGTGGAAAACCGTGGGTCACGGC
GGTGTGGCAGACCCTGACTCCGTACTGCCGCTCGCGTTGGACATCGAAAT
ATTGCAGGATGTCTGGGTGCTGGCATATTTTACGACGGAAGGCGAGTTCT
CTCGGAGATGCAAAGACGCTGAAGAGGAAGATTCATCCACAGTGCATCCC
GCAGACGTTTTGCAGTGGGACTGCAAGGACGCTGACGATCCTAGCAATTC
TACCCTGTATCCAGATGAAGACGCGGCGGTGACCATTACCTGTGGTTGTG
ACTCTCCTACCCCCTCCCCAACTCCGTCTCCAACCCCGTCTGACACACTC
TCTCCGACTACTCCGACTTCTTCCTCTCTGACGTCCTCTCCGACTTCCTC
TCCGACTACTCCCGCGCTCGACCCAGCGTCACCCTCAAGCCCTTCATCTC
AGTTGACGACGGAAACGTCTTCTGGAAAAGGTCAGTAGTTGATGCATTGC
TTGTCGAATTTGGTCTGGTACTACATCCTTGTAGGCGGCCTTGCTGCATC
GAAACAAACTACGGTATAGGCGGCCGCCCGCCGATGAGGCGGGACGGCCA
CCTGGAGGAAAAATCTTTGCCATTGTGTGATTAGACGTGCATTGGCCTAG
ACGGACACGGCGGCCACGAATTAAGCGAGTAGTAAGTTTCACGTAATTTA
ATCCAGAACAGTTTGGTGTAATATATTTCGCAACAAACTCTTTCGTGTCC
CTTAACAGAATGTCGGCACCGTCGCACTTGGAATTGACGAAGATGGCGTA
CGCTTAAAGGAGAACCCGAAATGAACGCGGAACACGTGAAACGCGTATGA
TGAAAAGACACCGCAGAAAAAACCAGTGTACGTGTTTATTGAATGTCCGT
ATAACGGTCGGACATGGTTCGGCCATGTTTCGGAACATGAGCTAAACGAA
ACTGCAACCTACTGCAAATAGACTACATTCGCGTCTGTTGCTGCTGCCAA
ACTCCAGAACACCGCACAACATGTATGTGTGTATGTCTACTGCTGCTTTT
TGGTGCACACATCGGTATTTGTGTGGTAAGACGGAAGAAAACGTCATTGA
CGGTCCAACTTCATTGTTGCCGCCCTGAATGTTTGGTCCCGCTCAAAACC
AAAGAACTGCTCAAGATTCTTCAAAATGTGGTGGTACACGTAGCAGAAGA
AATCAATATTACACGATGTATCCGGGTATCGATCGGACCATGATTCGGTC
ATGTTTGTTTCAGAACATGAGTTGAATGTAAAATGCAACGTATTGCCTAA
CCTAACCCTAACAACGGCCTAACATTGTTTTGCAAGTAAGTGTTGTAATA
TGAGCAGAAAAACATAAACAAAGAAAGAAATGACACTATTGGAGGTAGGT
CGAACATCCTCATTATCGCAGAATTGCGCACTCTCGATGTTGAGAGGGTT
TGTCTAGCGGACGAAGAAGCATCCTCGACTGCTCGTCGTCTAGGCGCTGA
ATAAATCGTTCCGTCTGTCCATTTGACTCGTGGTGTATTGTTGCGAAGGC
GACATACCTGAAGGTACACGTGATGACAGCAGGATGTATACGTTGTTGGT
TTGGCGATCTGGACGGGGTGGTCGGTGGCATACGTAAAGGTACGCGGGAT
GAAAGAAGCTCAACGTTGTTGGTTTGTCGATTCGGATGAGGTAGGTGGTG
CGGGAAAAATATGAACCTTTGGGGCACACGCGCGGAACGTTGTGCGCGGA
AAAGCTGTTGTGTCGTTTTTTTTTTTTTTCATGTTTGTGATGATCTGATC
GGATAAATACACGGTGAGATTCGATTTGAAAGACGATTCCGCTGCACAAG
TTGCCACGACGACATACCGCTGGCGTGGTAACCAGACACGTATCCATACA
TACGAATGACGGCTTGTACTGTGGGTATACAACACAGACACGTATCCTTA
TGTTGGAATGTCTGTTTGTGCTGAAGGTATATTATCACATATGTTCAGAT
GCACGACGTGTGTACGGATGTGATACTTCGGCAGGATGTGATATGTCTGC
AGGCAGGCAGGTTGATGCTCTATCTGTTGAACAAGCGTGGCAAAAGGTGC
ACTTTAATGCTGTTGTGCCAATGTTCCAAACGTTTATGGATTTTGACGCG
CCGAAATCTTGTAGTGGATAAGAACAGGCGAGAAAACACAAAAGAAAGGC
CAAAAAACGCTAAAAGCATAAGAAAATCAAGATGCTTCTGGTGCATGAGT
CGGTACAATTACAGGGCGACTGGAGGTCAAAGCGAGGGCCAGACCTGCCC
GTTCTCTGACTACCTTTGTGCACCGCGAGTGTCTTGATTTCGATATTCAT
TGCATTGCTGGCGGTTTCAATTTGGTCGGCAAACTATGCCACATGATAGG
AATTCCGGTGGGCGCCATCGCTGGGGTTGCTGTGGCCGGCGTACTAGTGG
TTTGCTTCGCCATCCTGGCCGTCCTGTTCAGGACTGGTCGCTTGAAGAAC
TGCTGTGGGGGCTCGCGAAACACGGCTGCTAATGATGGCGTCTCGCCGGG
TTATGCTAGCGACTCGGTGCCGAACGGAGGGACATCCGTTGAGGCCACCA
CGGGCCCCACGAGGGGTCATTACCCGGTTGCCCACCAGTACCCCGCGGCC
GTCTGACTCAAGTTGCAAGTAGTGCGGCGCGTGGAGTGTTCGACTCTCGC
CATTCGCTGACAATGGAAGCCTGTTCTCCTTGGCCTGCAGCTTGTGCAGA
GGGTCGTCGCTTGATCAATAGGCCCACCCGCTACATTTTGCAGGGAAGGC
TTGGTGCGGTGTCCAGAAATTTGAACGGCCTTACAAAAATTGTTAGTCGA
CCCATTTGACATCGACGTTTGCTCAATTGGAGTTGGCTTTGAATCTGGCG
AAGCGGGGTATGCAATTGGGAATGGTTTTTGTTCATTCGCGACAACAAAA
GATCCCGCATCGATTTGGGCGTATCGACACCCTGTACTCCATGTATTCTT
GCCCTCACTGTATAGACTGCCACGTCGAACGCATGCGTTACGGTGATTGG
TGAATTATTAGGCTGAAATGCCCTCCCGAAGATGCTGTGTGGGATTTCTC
TCTCCCCCTCGCCAGAGAGCTAGCTCGGGGCAATTCTTTCGTGCAGGGCT
CCAAATGGGTAATGCAGAGCCAGCCATCGTTAAGGCATTGGTGTTGCAGG
GTAGTGGCGGGCGGAGTCATGCGCATTGTGAAGTGGGGCTTCACTTGTGA
TGAAGAATATCTTTGCCGATCAAAACCATTGCCGTTCGTGAAAAGTACAT
GCTGCAGAATGTTGCCCAGATTTTCATGTGGGCGATGACGGGGGGAAGAG
ACGGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig761:5088..10493+

>mRNA_Ecto-sp13_S_contig761.18816.1 ID=mRNA_Ecto-sp13_S_contig761.18816.1|Name=mRNA_Ecto-sp13_S_contig761.18816.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=819bp|location=Sequence derived from alignment at Ecto-sp13_S_contig761:5088..10493+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTTGCCCGGAGGGAGAGTCGTTCGCTGTCGATTCTAACGTCACGTA
CGAGAATTCCCGAAGCTTCAATGGTTGCTACGAAGCGATAGCGGAATCCT
GGGGTGATCAAACCGCGTACTTTTTGGACGGAGAAGAGGAGGCCGGCACA
CCGGGGATGTACCCTAGCAGCAACTTCGATGACGAACATGATGTCTGGGT
GCTGGCATATTTTACGACGGAAGGCGAGTTCTCTCGGAGATGCAAAGACG
CTGAAGAGGAAGATTCATCCACAGTGCATCCCGCAGACGTTTTGCAGTGG
GACTGCAAGGACGCTGACGATCCTAGCAATTCTACCCTGTATCCAGATGA
AGACGCGGCGGTGACCATTACCTGTGGTTGTGACTCTCCTACCCCCTCCC
CAACTCCGTCTCCAACCCCGTCTGACACACTCTCTCCGACTACTCCGACT
TCTTCCTCTCTGACGTCCTCTCCGACTTCCTCTCCGACTACTCCCGCGCT
CGACCCAGCGTCACCCTCAAGCCCTTCATCTCAGTTGACGACGGAAACGT
CTTCTGGAAAAGGAATTCCGGTGGGCGCCATCGCTGGGGTTGCTGTGGCC
GGCGTACTAGTGGTTTGCTTCGCCATCCTGGCCGTCCTGTTCAGGACTGG
TCGCTTGAAGAACTGCTGTGGGGGCTCGCGAAACACGGCTGCTAATGATG
GCGTCTCGCCGGGTTATGCTAGCGACTCGGTGCCGAACGGAGGGACATCC
GTTGAGGCCACCACGGGCCCCACGAGGGGTCATTACCCGGTTGCCCACCA
GTACCCCGCGGCCGTCTGA
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