mRNA_Ecto-sp13_S_contig75979.18800.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig75979.18800.1
Unique NamemRNA_Ecto-sp13_S_contig75979.18800.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig75979.18800.1 vs. uniprot
Match: D8LAV8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAV8_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 6.710e-16
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    1 KVARTGKGGFIPVYRDIKNGRTRTVTIVKKATGDMK 108
            +VARTGKGGFIPVYRDIKNGRTRTVTIVKKATGDMK
Sbjct:   72 QVARTGKGGFIPVYRDIKNGRTRTVTIVKKATGDMK 107
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BLAST of mRNA_Ecto-sp13_S_contig75979.18800.1 vs. uniprot
Match: A0A507F4A7_9FUNG (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A507F4A7_9FUNG)

HSP 1 Score: 48.1 bits (113), Expect = 1.650e-5
Identity = 18/35 (51.43%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    4 VARTGKGGFIPVYRDIKNGRTRTVTIVKKATGDMK 108
            V RT K G++PVYR+ KNG+T+T+TI+++  G++K
Sbjct:   85 VKRTSKSGWLPVYREFKNGKTQTLTIIRRVDGNVK 119
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BLAST of mRNA_Ecto-sp13_S_contig75979.18800.1 vs. uniprot
Match: A0A7S3XRT8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRT8_HETAK)

HSP 1 Score: 46.2 bits (108), Expect = 9.040e-5
Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:    4 VARTGKGGFIPVYRDIKNGRTRTVTIVKKATGD 102
            V RT KG ++PVY DI+NGRT+T TIV++  GD
Sbjct:   90 VTRTLKGKWLPVYTDIRNGRTKTFTIVRRIEGD 122
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BLAST of mRNA_Ecto-sp13_S_contig75979.18800.1 vs. uniprot
Match: W7U6S8_9STRA (Ribosomal protein L49/IMG2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6S8_9STRA)

HSP 1 Score: 46.2 bits (108), Expect = 9.040e-5
Identity = 17/36 (47.22%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 KVARTGKGGFIPVYRDIKNGRTRTVTIVKKATGDMK 108
            +V RT KG ++PVY D++ GRT+ +T+V+K +GD++
Sbjct:   87 QVERTDKGRWLPVYTDVRKGRTQLITLVRKVSGDLE 122
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig75979.18800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LAV8_ECTSI6.710e-1697.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A507F4A7_9FUNG1.650e-551.43Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A7S3XRT8_HETAK9.040e-560.61Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7U6S8_9STRA9.040e-547.22Ribosomal protein L49/IMG2 n=2 Tax=Monodopsidaceae... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig75979contigEcto-sp13_S_contig75979:94..219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score75.1
Seed ortholog evalue8.7e-12
Seed eggNOG ortholog2880.D8LAV8
Model size126
KEGG koko:K17430
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.Mitochondrial large subunit ribosomal protein (Img2)
EggNOG OGs2CXPQ@1,2RYXJ@2759
Cds size126
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464028.6057556-CDS-Ecto-sp13_S_contig75979:93..2191681464028.6057556-CDS-Ecto-sp13_S_contig75979:93..219Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig75979 94..219 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig75979.18800.1prot_Ecto-sp13_S_contig75979.18800.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig75979 94..219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig75979.18800.1

>prot_Ecto-sp13_S_contig75979.18800.1 ID=prot_Ecto-sp13_S_contig75979.18800.1|Name=mRNA_Ecto-sp13_S_contig75979.18800.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=42bp
KVARTGKGGFIPVYRDIKNGRTRTVTIVKKATGDMKVIGFF*
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mRNA from alignment at Ecto-sp13_S_contig75979:94..219+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig75979.18800.1 ID=mRNA_Ecto-sp13_S_contig75979.18800.1|Name=mRNA_Ecto-sp13_S_contig75979.18800.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75979:94..219+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTGGCGAGAACAGGAAAGGGTGGCTTTATCCCGGTTTACCGAGACAT
CAAGAACGGCCGCACCCGAACAGTCACCATCGTCAAGAAAGCGACAGGGG
ACATGAAGGTAATAGGGTTCTTTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig75979:94..219+

>mRNA_Ecto-sp13_S_contig75979.18800.1 ID=mRNA_Ecto-sp13_S_contig75979.18800.1|Name=mRNA_Ecto-sp13_S_contig75979.18800.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75979:94..219+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTGGCGAGAACAGGAAAGGGTGGCTTTATCCCGGTTTACCGAGACAT
CAAGAACGGCCGCACCCGAACAGTCACCATCGTCAAGAAAGCGACAGGGG
ACATGAAGGTAATAGGGTTCTTTTAG
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