mRNA_Ecto-sp13_S_contig7593.18795.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7593.18795.1
Unique NamemRNA_Ecto-sp13_S_contig7593.18795.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7593.18795.1 vs. uniprot
Match: D8LP19_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP19_ECTSI)

HSP 1 Score: 455 bits (1171), Expect = 5.460e-147
Identity = 353/430 (82.09%), Postives = 358/430 (83.26%), Query Frame = 1 
Query:    1 VQGMGKPSDAGSLRAAGYRAVSRAVLQLGEGAAPYLATPALPAILNEVRSAVAASEREAXXXXXXGVES-SFEVVXXXXXIGVXXXXXXSKKGMGIEPAMSARKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAEEQAVCAGLSCLSQVVVCCKGHLPLGGRLAVEEVLHRGLELLAHAGAAAKGSRGXXXXXXXXXXXGAG--RRCARLEDPQVAREFLGLAHACLMTPLADGTRSGSLSVAIAAFRSFASHPDQRLAAASQQALAGCGAVLYPRAAPLHLPHAVTSQARAWGGSSASSTGRGLPIGWGDTLMVAEGESAEEESQEDLEDYQHPGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAQT---AAVEEGGRFHQTVPRDASST 1272
            VQGM KPSDAGSLRAAGYRAVSRAVLQLGEGAAPYLATPALPAIL EVRSAVAASE EAXXXXXX     S E V      GV      SKKGMGIEPAMSARK    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              LAEEQAVCAGLSCLS+VVVCCKGHLPLGGRLAVEEVLHRGLELL+HAG AAKGSRG  XXXXXXXXX     RRCARLEDP+VAREFLGLAHACLMTPLADGTRSGSLSVAIAAFRSFASHPDQRLAAASQQALAGCGAVLYPRAAPLHLPHAVTSQARAWGGSSASSTGRGLP+GWGDTLMVAEGESAEEESQEDLEDYQHPGRGXXXXXXXXX               XXXXXXXXXXXXX        AA+EEGGRF QTVPRDASST
Sbjct:  406 VQGMAKPSDAGSLRAAGYRAVSRAVLQLGEGAAPYLATPALPAILAEVRSAVAASEPEAXXXXXXXXXXXSVEFVAATGAPGVAAVGGGSKKGMGIEPAMSARKSSQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTGAAA--------LAEEQAVCAGLSCLSRVVVCCKGHLPLGGRLAVEEVLHRGLELLSHAGGAAKGSRGDGXXXXXXXXXXXXXXRRCARLEDPRVAREFLGLAHACLMTPLADGTRSGSLSVAIAAFRSFASHPDQRLAAASQQALAGCGAVLYPRAAPLHLPHAVTSQARAWGGSSASSTGRGLPMGWGDTLMVAEGESAEEESQEDLEDYQHPGRGXXXXXXXXXALTVRAAGLAAEGLTXXXXXXXXXXXXXXXXXXXXXAALEEGGRFPQTVPRDASST 827
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BLAST of mRNA_Ecto-sp13_S_contig7593.18795.1 vs. uniprot
Match: A0A6H5JJU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU2_9PHAE)

HSP 1 Score: 413 bits (1062), Expect = 2.930e-130
Identity = 274/428 (64.02%), Postives = 284/428 (66.36%), Query Frame = 1 
Query:    1 VQGMGKPSDAGSLRAAGYRAVSRAVLQLGEGAAPYLATPALPAILNEVRSAVAASEREAXXXXXXGVESSFEVVXXXXXIGVXXXXXXSKKGMGIEPAMSARKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAEEQAVCAGLSCLSQVVVCCKGHLPLGGRLAVEEVLHRGLELLAHAGAAAKGSRGXXXXXXXXXXXGAGRRCARLEDPQVAREFLGLAHACLMTPLADGTRSGSLSVAIAAFRSFASHPDQRLAAASQQALAGCGAVLYPRAAPLHLPHAVTSQARAWGGSSASSTGRGLPIGWGDTLMVAEGESAEEESQEDLEDYQHPGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----VGAQTAAVEEGGRFHQTVPRDASST 1272
            VQGMGKPSDAGSLRAAGYRAVSRAVLQLGEGAAPYLATPALPAIL EVR+AVAASE E XXXXXX                                                                                             L+EEQAVCAGLSCLS+VVVCCKGHLPLGGRLAVEEVLHRGLELL+HA  AAKGSRG XXXXXXX   G GRRCA LEDP+VAREF GLAHACLMTPLADGTRSGSLSVAIAAFRS ASH D+RLAAASQQALAGCGA+LYPRAAPLHLPHAVTSQARAWGGSSASSTGRGLP+GWGDTLMVAEGESAEEES+EDL+DYQHPGRGXXXXXXXX                                  GAQTAAVE GG F QTVPRDASST
Sbjct:  496 VQGMGKPSDAGSLRAAGYRAVSRAVLQLGEGAAPYLATPALPAILAEVRAAVAASEPEXXXXXXXXXXXXXXXXA-----------------------------------------------------------------------------------LSEEQAVCAGLSCLSRVVVCCKGHLPLGGRLAVEEVLHRGLELLSHAAGAAKGSRGNXXXXXXXGASGEGRRCAPLEDPRVAREFFGLAHACLMTPLADGTRSGSLSVAIAAFRSLASHSDERLAAASQQALAGCGAILYPRAAPLHLPHAVTSQARAWGGSSASSTGRGLPMGWGDTLMVAEGESAEEESREDLDDYQHPGRGXXXXXXXXMALTVRAAELAAEGLTAAAVAEPIVTPLPXXXXAGAQTAAVEGGGGFPQTVPRDASST 840
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7593.18795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LP19_ECTSI5.460e-14782.09Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JJU2_9PHAE2.930e-13064.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7593contigEcto-sp13_S_contig7593:4426..6926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1611
Hectar predicted targeting categoryother localisation
Exons3
Cds size1602
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464028.3696926-CDS-Ecto-sp13_S_contig7593:4425..50541681464028.3696926-CDS-Ecto-sp13_S_contig7593:4425..5054Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7593 4426..5054 -
1681464028.3793137-CDS-Ecto-sp13_S_contig7593:5588..58051681464028.3793137-CDS-Ecto-sp13_S_contig7593:5588..5805Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7593 5589..5805 -
1681464028.3914723-CDS-Ecto-sp13_S_contig7593:6161..69171681464028.3914723-CDS-Ecto-sp13_S_contig7593:6161..6917Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7593 6162..6917 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464028.4032319-UTR-Ecto-sp13_S_contig7593:6917..69261681464028.4032319-UTR-Ecto-sp13_S_contig7593:6917..6926Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7593 6918..6926 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7593.18795.1prot_Ecto-sp13_S_contig7593.18795.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7593 4426..6917 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7593.18795.1

>prot_Ecto-sp13_S_contig7593.18795.1 ID=prot_Ecto-sp13_S_contig7593.18795.1|Name=mRNA_Ecto-sp13_S_contig7593.18795.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=534bp
MGKPSDAGSLRAAGYRAVSRAVLQLGEGAAPYLATPALPAILNEVRSAVA
ASEREAAGGGGTGVESSFEVVAATAAIGVAAVGGGSKKGMGIEPAMSARK
SSQKKQRRSREKEVGRALAAADAAAAATATAASNGGGSRGDSGGGGGARR
TGAAALAEEQAVCAGLSCLSQVVVCCKGHLPLGGRLAVEEVLHRGLELLA
HAGAAAKGSRGGGGGGSGGGASGAGRRCARLEDPQVAREFLGLAHACLMT
PLADGTRSGSLSVAIAAFRSFASHPDQRLAAASQQALAGCGAVLYPRAAP
LHLPHAVTSQARAWGGSSASSTGRGLPIGWGDTLMVAEGESAEEESQEDL
EDYQHPGRGGGAAGGGGMALTTRAAELAAEGLTAAAVAGPVVTPPPVGAQ
TAAVEEGGRFHQTVPRDASSTSAAAAAAGAGTENGDAATTSKSRSSKGKG
KGKGRVGGGAEGGGGSGDGGSSAGAGAAGTVEEDGHNDNEAAAAATTTAG
TRKRPRNDVDGDDARDAMDGDEEEEEEEEEVELE
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mRNA from alignment at Ecto-sp13_S_contig7593:4426..6926-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7593.18795.1 ID=mRNA_Ecto-sp13_S_contig7593.18795.1|Name=mRNA_Ecto-sp13_S_contig7593.18795.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2501bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7593:4426..6926- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCAGGGTATGGGTAAGCCGTCCGACGCCGGCTCTCTCCGCGCCGCCGG
CTACCGCGCCGTTTCGAGGGCCGTCCTTCAGCTCGGCGAGGGCGCCGCCC
CGTACCTGGCCACGCCCGCTCTCCCGGCCATTCTCAATGAGGTCAGGTCT
GCCGTCGCCGCATCCGAGCGTGAGGCCGCTGGCGGCGGCGGCACGGGGGT
TGAAAGTAGTTTCGAAGTTGTGGCAGCCACCGCCGCCATCGGTGTGGCGG
CCGTAGGTGGTGGTTCGAAGAAGGGCATGGGCATAGAGCCGGCCATGTCT
GCCCGCAAGAGCTCGCAGAAGAAGCAGCGGCGGTCGCGGGAGAAGGAGGT
CGGGCGGGCGCTCGCCGCCGCTGACGCTGCCGCTGCCGCCACGGCCACGG
CCGCGAGCAACGGCGGCGGTAGCCGTGGCGATAGCGGCGGCGGCGGCGGA
GCGAGGCGGACCGGAGCGGCGGCCTTGGCGGAGGAGCAGGCCGTGTGCGC
CGGACTGTCGTGCTTGTCGCAGGTGGTGGTGTGCTGTAAGGGCCACCTCC
CGCTGGGGGGAAGGCTAGCCGTCGAGGAAGTGCTCCACCGCGGCCTCGAG
CTCCTGGCGCACGCGGGGGCGGCGGCGAAGGGAAGTCGTGGCGGCGGGGG
CGGAGGCAGCGGCGGTGGTGCCAGTGGGGCAGGAAGGAGGTGTGCCCGGC
TGGAGGACCCGCAGGTGGCGCGGGAATTTTTGGGGTTAGCGCACGCGTGC
TTGATGACTCCCCTGGTGAGAAGGCGTGTGTGTGTGTGTGGCGAAAATGT
GTACCAGGTAGGTAATTTTCTGTGGACGGTTTATGGTTCCCACACACGCG
GACGACACCAGCGTGCGTGGCGCCGCGCACGTGCCCGGCACAAACAAGTT
TGATGCCTTCGGCTTTGTGAGTAGTCTCGTCTTTGCTGTGTAGCAGAGCG
GCCTGGCGCTCGCACAACGCAAAATGCTGGTGTCGACTATCCAAATGTTC
GAGAGAGGTTACTCAGAGCAATCGGTTCGCCGCGTTCATTTGTGTCCGTG
AGACCTTCATCAAGATGGGAGTCAGCCAATTATCTGCTAAAATGCTTACA
CTTCATTTTTTTGTTGGTCAGGCGGACGGCACCAGGAGCGGAAGCCTCTC
CGTCGCAATCGCGGCGTTCCGATCGTTCGCCTCGCACCCGGACCAGAGGC
TGGCGGCGGCGAGCCAGCAGGCGCTCGCGGGGTGTGGCGCCGTCTTGTAC
CCCAGGGCCGCGCCGCTGCACCTCCCGCACGCGGTAACCAGCCAGGCCCG
AGCCTGGGGTGGAAGCAGCGCGAGCTCTACCGGTCGCGGTGCGTTCATTT
TTTTTTTTTCTTGCCGATCGCTCTCGGTTATGTTATCCGACTGGAATCGC
GAGCTCTCTTTTGTTAGCGTAGATTTCTTGGGAATAGTAGTCGGTCGCTT
CGCCGCGTCTGCGTGTGCCTTTTAGCGGGCTGTACGTTTCGTAGGTTTGT
GCTGTGATTGGTCAGTTGTTGGCCAGTCGAACGAGTCAGTCCGGAACAAA
AGAAACAGTTGGATTGTTGTATTGGTCGTCGGAGTTTCTTGCACATGGCC
TGCTTTTGGTCGTGTCATCTCCCACCCACTCTTCTGCTAATTGTGCCATC
GTCAAAGGAGGTGCGGGTTGCAACAAGGAAACGTGTGCACGCCGCTGTGT
AAGGTGTTCACTGTCGCTTTGTGTTCACGTTTGACAGTCGGCATGGTTAT
GAATTTTATTGTTCCGTGTGCTGCGTGTATTTTTTGTCATGACCACAACC
ATCACCTCCGGCGGCTGATTCACAAAAGAAATATTGCCGGAATTTTCTCC
CACTATGCACGCTTGTCTTCAGGTTTGCCCATAGGATGGGGGGACACGCT
GATGGTGGCGGAGGGAGAATCAGCCGAAGAAGAAAGCCAAGAAGACCTCG
AAGACTATCAACATCCAGGACGAGGCGGCGGAGCAGCGGGAGGAGGGGGG
ATGGCGCTAACTACGCGAGCAGCGGAGTTGGCTGCCGAAGGCCTGACCGC
TGCCGCCGTCGCCGGACCCGTCGTGACCCCGCCGCCCGTGGGGGCACAAA
CGGCGGCCGTCGAGGAGGGCGGGCGCTTCCACCAGACCGTTCCTCGCGAC
GCATCTTCTACTTCCGCTGCTGCTGCTGCTGCCGGGGCCGGGACCGAAAA
CGGCGACGCTGCTACGACAAGCAAGAGTAGGTCGAGTAAGGGCAAGGGCA
AGGGCAAGGGCAGAGTCGGCGGCGGAGCTGAAGGCGGAGGGGGCAGCGGC
GACGGCGGCAGTAGCGCGGGAGCGGGCGCAGCAGGAACGGTGGAGGAGGA
CGGGCACAACGATAATGAAGCGGCGGCGGCGGCGACGACGACCGCGGGGA
CGCGAAAACGGCCCCGAAATGACGTGGACGGGGACGATGCTCGTGATGCC
ATGGATGGCGACGAAGAGGAGGAGGAGGAGGAGGAGGAGGTAGAGCTAGA
G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7593:4426..6926-

>mRNA_Ecto-sp13_S_contig7593.18795.1 ID=mRNA_Ecto-sp13_S_contig7593.18795.1|Name=mRNA_Ecto-sp13_S_contig7593.18795.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1602bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7593:4426..6926- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTAAGCCGTCCGACGCCGGCTCTCTCCGCGCCGCCGGCTACCGCGC
CGTTTCGAGGGCCGTCCTTCAGCTCGGCGAGGGCGCCGCCCCGTACCTGG
CCACGCCCGCTCTCCCGGCCATTCTCAATGAGGTCAGGTCTGCCGTCGCC
GCATCCGAGCGTGAGGCCGCTGGCGGCGGCGGCACGGGGGTTGAAAGTAG
TTTCGAAGTTGTGGCAGCCACCGCCGCCATCGGTGTGGCGGCCGTAGGTG
GTGGTTCGAAGAAGGGCATGGGCATAGAGCCGGCCATGTCTGCCCGCAAG
AGCTCGCAGAAGAAGCAGCGGCGGTCGCGGGAGAAGGAGGTCGGGCGGGC
GCTCGCCGCCGCTGACGCTGCCGCTGCCGCCACGGCCACGGCCGCGAGCA
ACGGCGGCGGTAGCCGTGGCGATAGCGGCGGCGGCGGCGGAGCGAGGCGG
ACCGGAGCGGCGGCCTTGGCGGAGGAGCAGGCCGTGTGCGCCGGACTGTC
GTGCTTGTCGCAGGTGGTGGTGTGCTGTAAGGGCCACCTCCCGCTGGGGG
GAAGGCTAGCCGTCGAGGAAGTGCTCCACCGCGGCCTCGAGCTCCTGGCG
CACGCGGGGGCGGCGGCGAAGGGAAGTCGTGGCGGCGGGGGCGGAGGCAG
CGGCGGTGGTGCCAGTGGGGCAGGAAGGAGGTGTGCCCGGCTGGAGGACC
CGCAGGTGGCGCGGGAATTTTTGGGGTTAGCGCACGCGTGCTTGATGACT
CCCCTGGCGGACGGCACCAGGAGCGGAAGCCTCTCCGTCGCAATCGCGGC
GTTCCGATCGTTCGCCTCGCACCCGGACCAGAGGCTGGCGGCGGCGAGCC
AGCAGGCGCTCGCGGGGTGTGGCGCCGTCTTGTACCCCAGGGCCGCGCCG
CTGCACCTCCCGCACGCGGTAACCAGCCAGGCCCGAGCCTGGGGTGGAAG
CAGCGCGAGCTCTACCGGTCGCGGTTTGCCCATAGGATGGGGGGACACGC
TGATGGTGGCGGAGGGAGAATCAGCCGAAGAAGAAAGCCAAGAAGACCTC
GAAGACTATCAACATCCAGGACGAGGCGGCGGAGCAGCGGGAGGAGGGGG
GATGGCGCTAACTACGCGAGCAGCGGAGTTGGCTGCCGAAGGCCTGACCG
CTGCCGCCGTCGCCGGACCCGTCGTGACCCCGCCGCCCGTGGGGGCACAA
ACGGCGGCCGTCGAGGAGGGCGGGCGCTTCCACCAGACCGTTCCTCGCGA
CGCATCTTCTACTTCCGCTGCTGCTGCTGCTGCCGGGGCCGGGACCGAAA
ACGGCGACGCTGCTACGACAAGCAAGAGTAGGTCGAGTAAGGGCAAGGGC
AAGGGCAAGGGCAGAGTCGGCGGCGGAGCTGAAGGCGGAGGGGGCAGCGG
CGACGGCGGCAGTAGCGCGGGAGCGGGCGCAGCAGGAACGGTGGAGGAGG
ACGGGCACAACGATAATGAAGCGGCGGCGGCGGCGACGACGACCGCGGGG
ACGCGAAAACGGCCCCGAAATGACGTGGACGGGGACGATGCTCGTGATGC
CATGGATGGCGACGAAGAGGAGGAGGAGGAGGAGGAGGAGGTAGAGCTAG
AG
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