mRNA_Ecto-sp13_S_contig75776.18776.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig75776.18776.1
Unique NamemRNA_Ecto-sp13_S_contig75776.18776.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig75776.18776.1 vs. uniprot
Match: D7FW29_ECTSI (Abhydrolase_5 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW29_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 2.240e-15
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 VIIVPGGLVSPFAYSILARSLAQRGYPTFVLRLPFNLGARG 123
            VIIVPGGLVSPFAYSILARSLAQRGYPTFVLRLPFNL   G
Sbjct:  126 VIIVPGGLVSPFAYSILARSLAQRGYPTFVLRLPFNLAFYG 166
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BLAST of mRNA_Ecto-sp13_S_contig75776.18776.1 vs. uniprot
Match: A0A6H5JK92_9PHAE (Abhydrolase_5 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK92_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 7.890e-7
Identity = 22/41 (53.66%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 VIIVPGGLVSPFAYSILARSLAQRGYPTFVLRLPFNLGARG 123
            V+I PG LV P AY+ LAR++A++GYP+++LR  FNL  +G
Sbjct:  148 VVIFPGALVPPSAYAPLARTMARKGYPSYILRFEFNLATKG 188
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BLAST of mRNA_Ecto-sp13_S_contig75776.18776.1 vs. uniprot
Match: D7FXM1_ECTSI (Abhydrolase_5 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM1_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 7.960e-7
Identity = 22/41 (53.66%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 VIIVPGGLVSPFAYSILARSLAQRGYPTFVLRLPFNLGARG 123
            V+I PG LV P AY+ LAR++A++GYP+++LR  FNL  +G
Sbjct:  149 VVIFPGALVPPSAYAPLARTMARKGYPSYILRFEFNLATKG 189
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BLAST of mRNA_Ecto-sp13_S_contig75776.18776.1 vs. uniprot
Match: UPI001A9BD988 (thioesterase domain-containing protein n=1 Tax=Enterococcus sp. 669A TaxID=2815325 RepID=UPI001A9BD988)

HSP 1 Score: 47.4 bits (111), Expect = 5.670e-5
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:    1 VIIVPGGLVSPFAYSILARSLAQRGYPTFVLRLPFNL 111
            VI  PG LV P +YS+ A SLAQ GYP +VL++P +L
Sbjct:   63 VIFYPGALVDPESYSVWAESLAQSGYPVYVLKMPLDL 99
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BLAST of mRNA_Ecto-sp13_S_contig75776.18776.1 vs. uniprot
Match: F0T932_METLA (Abhydrolase_5 domain-containing protein n=2 Tax=Methanobacterium TaxID=2160 RepID=F0T932_METLA)

HSP 1 Score: 47.0 bits (110), Expect = 8.050e-5
Identity = 20/41 (48.78%), Postives = 27/41 (65.85%), Query Frame = 1 
Query:    1 VIIVPGGLVSPFAYSILARSLAQRGYPTFVLRLPFNLGARG 123
            +I  PG  V P AYS++A  LAQ GY T ++++PFNL   G
Sbjct:   72 IIFYPGAKVQPEAYSVIASKLAQNGYTTIIVKMPFNLAIFG 112
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig75776.18776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FW29_ECTSI2.240e-1592.68Abhydrolase_5 domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JK92_9PHAE7.890e-753.66Abhydrolase_5 domain-containing protein n=1 Tax=Ec... [more]
D7FXM1_ECTSI7.960e-753.66Abhydrolase_5 domain-containing protein n=1 Tax=Ec... [more]
UPI001A9BD9885.670e-556.76thioesterase domain-containing protein n=1 Tax=Ent... [more]
F0T932_METLA8.050e-548.78Abhydrolase_5 domain-containing protein n=2 Tax=Me... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig75776contigEcto-sp13_S_contig75776:278..403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score76.3
Seed ortholog evalue3.9e-12
Seed eggNOG ortholog2880.D7FW29
Model size126
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.Alpha/beta hydrolase family
EggNOG OGs2EWUG@1,2SYKF@2759
Cds size126
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464026.8326716-CDS-Ecto-sp13_S_contig75776:277..4031681464026.8326716-CDS-Ecto-sp13_S_contig75776:277..403Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig75776 278..403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig75776.18776.1prot_Ecto-sp13_S_contig75776.18776.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig75776 278..403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig75776.18776.1

>prot_Ecto-sp13_S_contig75776.18776.1 ID=prot_Ecto-sp13_S_contig75776.18776.1|Name=mRNA_Ecto-sp13_S_contig75776.18776.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=42bp
VIIVPGGLVSPFAYSILARSLAQRGYPTFVLRLPFNLGARG*
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mRNA from alignment at Ecto-sp13_S_contig75776:278..403+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig75776.18776.1 ID=mRNA_Ecto-sp13_S_contig75776.18776.1|Name=mRNA_Ecto-sp13_S_contig75776.18776.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75776:278..403+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGATCATCGTTCCTGGAGGCTTGGTTTCCCCCTTCGCGTATTCCATCCT
GGCTCGCTCATTGGCGCAGCGAGGCTACCCGACATTTGTCCTGCGGCTAC
CCTTCAACCTAGGTGCTCGTGGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig75776:278..403+

>mRNA_Ecto-sp13_S_contig75776.18776.1 ID=mRNA_Ecto-sp13_S_contig75776.18776.1|Name=mRNA_Ecto-sp13_S_contig75776.18776.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75776:278..403+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGATCATCGTTCCTGGAGGCTTGGTTTCCCCCTTCGCGTATTCCATCCT
GGCTCGCTCATTGGCGCAGCGAGGCTACCCGACATTTGTCCTGCGGCTAC
CCTTCAACCTAGGTGCTCGTGGTTGA
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