mRNA_Ecto-sp13_S_contig75628.18763.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig75628.18763.1
Unique NamemRNA_Ecto-sp13_S_contig75628.18763.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig75628.18763.1 vs. uniprot
Match: D8LJD7_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJD7_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 1.650e-46
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 1 
Query:    7 VFRYEQLLALPAPPSGRDVPGGNGGGLHSCLTCGKMFTTAEFLQQHIARKHARHAGSSADTKVDQEEKTAYPTQLRLFVQ 246
            + RYEQLLALPAPPSGRDVPGGNGGGLHSCLTCGKMFTTAEFLQQHIARKHARHAGSSADTKVDQEEKTAYPTQLRLFVQ
Sbjct:  141 IARYEQLLALPAPPSGRDVPGGNGGGLHSCLTCGKMFTTAEFLQQHIARKHARHAGSSADTKVDQEEKTAYPTQLRLFVQ 220
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig75628.18763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJD7_ECTSI1.650e-4697.50C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig75628contigEcto-sp13_S_contig75628:99..350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score165.2
Seed ortholog evalue1.3e-38
Seed eggNOG ortholog2880.D8LJD7
Preferred nameDZIP1
Model size252
KEGG koko:K16470
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000902,GO:0000904,GO:0001568,GO:0001578,GO:0001944,GO:0001947,GO:0002009,GO:0003006,GO:0003007,GO:0003143,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006355,GO:0006357,GO:0006606,GO:0006607,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006935,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007276,GO:0007281,GO:0007368,GO:0007389,GO:0007399,GO:0007409,GO:0007411,GO:0007417,GO:0007420,GO:0007507,GO:0008104,GO:0008150,GO:0008589,GO:0009605,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009889,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010638,GO:0010646,GO:0015031,GO:0015630,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019222,GO:0019953,GO:0021536,GO:0021983,GO:0021984,GO:0022008,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0023051,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030510,GO:0030900,GO:0031175,GO:0031290,GO:0031323,GO:0031326,GO:0031344,GO:0031346,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034451,GO:0034504,GO:0034613,GO:0035050,GO:0035082,GO:0035239,GO:0035270,GO:0035295,GO:0036064,GO:0040011,GO:0042221,GO:0042330,GO:0042886,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045184,GO:0045185,GO:0045724,GO:0045995,GO:0046907,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048562,GO:0048568,GO:0048583,GO:0048598,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048729,GO:0048731,GO:0048732,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051098,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051220,GO:0051234,GO:0051235,GO:0051239,GO:0051252,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0060255,GO:0060271,GO:0060322,GO:0060429,GO:0060491,GO:0060562,GO:0061371,GO:0061512,GO:0061564,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0072358,GO:0072359,GO:0072594,GO:0080090,GO:0090092,GO:0090287,GO:0097485,GO:0097539,GO:0097730,GO:0120025,GO:0120031,GO:0120032,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:1902017,GO:1902115,GO:1902117,GO:1903506,GO:1905330,GO:2000026,GO:2000027,GO:2000112,GO:2000223,GO:2000826,GO:2001141
Exons1
EggNOG free text desc.Zinc finger protein
EggNOG OGs28IYV@1,2QRAI@2759
Cds size252
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464025.6260555-CDS-Ecto-sp13_S_contig75628:98..3501681464025.6260555-CDS-Ecto-sp13_S_contig75628:98..350Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig75628 99..350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig75628.18763.1prot_Ecto-sp13_S_contig75628.18763.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig75628 99..350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig75628.18763.1

>prot_Ecto-sp13_S_contig75628.18763.1 ID=prot_Ecto-sp13_S_contig75628.18763.1|Name=mRNA_Ecto-sp13_S_contig75628.18763.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
MRVFRYEQLLALPAPPSGRDVPGGNGGGLHSCLTCGKMFTTAEFLQQHIA
RKHARHAGSSADTKVDQEEKTAYPTQLRLFVQV*
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mRNA from alignment at Ecto-sp13_S_contig75628:99..350+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig75628.18763.1 ID=mRNA_Ecto-sp13_S_contig75628.18763.1|Name=mRNA_Ecto-sp13_S_contig75628.18763.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75628:99..350+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTGTGTTCAGGTATGAGCAACTCCTGGCCTTACCCGCACCGCCATC
CGGCCGAGACGTCCCGGGAGGCAACGGCGGAGGCTTGCACTCGTGCCTGA
CATGCGGGAAGATGTTCACCACTGCCGAGTTCTTGCAGCAACACATCGCC
AGGAAGCATGCTCGGCACGCCGGTAGCTCTGCAGACACGAAAGTTGATCA
AGAGGAGAAAACTGCGTATCCAACACAGCTGAGGCTTTTCGTGCAGGTAT
GA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig75628:99..350+

>mRNA_Ecto-sp13_S_contig75628.18763.1 ID=mRNA_Ecto-sp13_S_contig75628.18763.1|Name=mRNA_Ecto-sp13_S_contig75628.18763.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75628:99..350+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTGTGTTCAGGTATGAGCAACTCCTGGCCTTACCCGCACCGCCATC
CGGCCGAGACGTCCCGGGAGGCAACGGCGGAGGCTTGCACTCGTGCCTGA
CATGCGGGAAGATGTTCACCACTGCCGAGTTCTTGCAGCAACACATCGCC
AGGAAGCATGCTCGGCACGCCGGTAGCTCTGCAGACACGAAAGTTGATCA
AGAGGAGAAAACTGCGTATCCAACACAGCTGAGGCTTTTCGTGCAGGTAT
GA
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